NO21G01610.2, NO21G01610.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01610.2
Unique NameNO21G01610.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2132
Alignment locationchr21:481824..484084 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:481824..484084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01610.2 vs.
Match: EWM22660.1 (trna dimethylallyltransferase 9 [Nannochloropsis gaditana])

HSP 1 Score: 417.5 bits (1072), Expect = 4.300e-113
Identity = 232/366 (63.39%), Postives = 273/366 (74.59%), Query Frame = 0 
Query:   13 LLVFLCNCLLLMVLASAASAATTTIFIVNKILLGPVCPRLFLQRLYSCHLTDRFRVAS----MSTSSTSPSRPKVIVITGPTAVGKSNLALTLCRNASQSVTGEIITVDSVQVYRALDIGSNKPSKEEQAEVPHHLLDVLEPNAPEAFTAGDFVRKAEEAIDDALARGRIPVVVGGTSMYTQWLVQGRPDAPKSDPEVELKARGILAPFQNKNDWEGGLALLAARNPDRASKLHANDWYRLERALEVTFMTS----------PPSSFSSSSSCSSFNGVRSQSLTSKYDFRCFFLIAPREELCHVIDQRCLQMVEKGLLEETASLLSAGVLDPSSPPGRAIGYRQAIEYLSKEGVKNKEEEAVALK 365
            +L FL    +LMV AS+   A        K  L  V P   L   ++  +   +R  S    MS S    SRPKV+V+TGPTAVGKSNLAL +C++ +    GEII+VDSVQVYR LD+GSNKPS+ E+A VPHHLLDVL+ ++PEAFTAGDFVRKAEEAIDD LARG +PVVVGGTSMYTQWLVQGRPDAPKSDPE+E +AR +LAPF +K DW+GGL+LL A N +RA+KLHANDWYRLERALEV   TS          PPS   S+ S SSF G+RSQ+L+ KYDFRCFFLIA REELC +ID+RCLQMVE GLLEETA LL+AG L+PSSPPGRAIGYRQ IEYLSKEG++ +  EA AL+
Sbjct:   11 ILAFLVTYNILMVSASSCLIALC------KTSLSSVHP---LSSYHTRAVPASWRQFSSFDPMSASRAGGSRPKVVVVTGPTAVGKSNLALRICQDLAPGARGEIISVDSVQVYRGLDVGSNKPSEAERARVPHHLLDVLDADSPEAFTAGDFVRKAEEAIDDVLARGGMPVVVGGTSMYTQWLVQGRPDAPKSDPEMEQRARKMLAPFLDKKDWKGGLSLLKAHNTERAAKLHANDWYRLERALEVALTTSQKGSDPEAAVPPS--PSAHSSSSFTGIRSQTLSRKYDFRCFFLIAAREELCRLIDRRCLQMVEGGLLEETAHLLAAGTLNPSSPPGRAIGYRQTIEYLSKEGIEGEMAEATALQ 365
The following BLAST results are available for this feature:
BLAST of NO21G01610.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22660.14.300e-11363.39trna dimethylallyltransferase 9 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01610NO21G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01610.2NO21G01610.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01610.2.cds1NO21G01610.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01610.2.cds2NO21G01610.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01610.2 ID=NO21G01610.2|Name=NO21G01610.2|organism=Nannochloropsis oceanica|type=mRNA|length=2132bp
TGATTGAGGGAGAGAGAGGGAGTCAGCATCGTGGTTCTGTACCCTAGGAG
GTGGCCTCGCCATCGCCAACAGAAGCAGATCGGTGCTGCCTTGTCCCAAT
GGAGCCCGACACAATCAACAGCAGCAAAACGAGCTACACTCGCACCAACA
CAACGAGCAGAAGGCGTGGATTGCAATCGCAGTGCTAAGGCACCGGGGTG
AAAAGGCAGAGCAGGCAAAACACATATCATGTATAGATCGACGTGGCATC
AAGGAGACTCTCGGAGGAGGTTATTAAAGGTCATTCAACCAATCTCACAA
AAAGTCTTATGAATCAAAATCAACCGGAAAATTAAAAACCTAAAACGAAC
ATACGCCATTCGCACATACATAGTGATAACAACGCCGATCATCCAGTGAC
CAAGGCCTTTTCCATGGCGGCATGATCCTCCGCGCCTTCTCCCTTCCTGC
AATCCTCCTCCTCGTCTTTCTCTGCAACTGCCTTCTATTAATGGTCCTCG
CCTCAGCAGCCTCAGCAGCCACTACAACCATTTTCATCGTGAACAAAATC
CTCCTTGGCCCTGTGTGCCCTCGCTTATTCCTACAGCGCTTGTACTCGTG
TCACCTTACCGACAGATTCCGCGTCGCCAGTATGTCTACCTCCTCCACCT
CTCCCTCACGACCCAAAGTCATTGTCATCACAGGCCCTACGGCCGTGGGC
AAATCCAACCTAGCTTTGACACTTTGTCGAAATGCCTCCCAGTCTGTGAC
AGGGGAGATAATTACGGTGGACTCCGTTCAAGTCTATCGAGCGTTGGATA
TTGGGTCGAACAAACCCTCAAAGGAAGAACAGGCTGAGGTCCCCCACCAC
TTACTCGATGTCCTGGAGCCCAATGCCCCCGAGGCCTTCACCGCGGGTGA
TTTCGTCCGGAAAGCAGAGGAAGCGATTGATGACGCTTTGGCACGCGGAA
GAATACCGGTGGTGGTAGGCGGGACGTCTATGTATACGCAGTGGCTGGTG
CAGGGACGGCCGGACGCCCCAAAGTCGGACCCTGAGGTGGAGTTAAAGGC
AAGAGGGATACTGGCACCTTTTCAGAACAAAAATGATTGGGAGGGCGGCC
TGGCTCTCTTAGCCGCCCGGAACCCCGATCGCGCCAGCAAGCTACATGCT
AACGATTGGTACCGCCTTGAACGTGCCCTAGAGGTCACTTTCATGACTTC
CCCCCCTTCCTCTTTCTCCTCCTCCTCTTCCTGCTCCTCTTTTAATGGCG
TCCGCTCCCAATCGCTAACCAGCAAATACGACTTTCGCTGTTTTTTCCTC
ATAGCCCCGCGGGAAGAACTCTGCCACGTCATAGATCAACGCTGTCTTCA
AATGGTCGAAAAAGGGCTCCTGGAAGAAACTGCCTCTCTGTTATCTGCAG
GCGTCCTAGACCCTTCATCACCCCCAGGGCGCGCCATTGGCTATAGACAA
GCAATTGAGTATTTGAGCAAGGAAGGAGTGAAGAATAAGGAGGAGGAAGC
TGTAGCATTGAAGGTAAGTAGGCAGGAAAGGAGGTTAGAGAGGTTTCTTT
TCCAACTACCGGCCTGAAATTTTTTCCATCCCTGACTGAATTTTTATTTC
ATCCCCATATATCGTTTTACCCCTTTCCTCCCTTCCTCCCTCCCACCCTC
CCCCCCTCCCTCAGCTCTTCCTCAAGGATTTTGCCACAGCCACCCGTCGC
TACGCCAAGCAACAAATGGTGTGGTATCGAGCGCAGCCTGAGTTCATCTG
GTTGAGATGGAACCTGCTCGACCTCGCTCCCGCTCTCGCCTCCCTTCATG
CCTCCTTTAAGGAGGACGAGATGAGTCATTTCGAGAGGAGGAGGGGGGGC
GCGCAAGAAGCATTGAGGAAGGAGAACATGATGGAAGGAAAGAGAATGAA
GGCGTACACGTCGAAGATATTGGAAGGACTGACAGGGGACAAGTTGGAAA
CGTTGGTTAGGAGAGCGACAGATTGCAGAGCGCAGGTGCTGGCAGCAGCA
GCAGCTGCAGATAAAAGATAGGGACAACGCGTCCATAGAGAGAGGAACAA
GGGAGACCTAGAAAGGAGTTTGGAAAAAAATGTGTACAGTAGGCCTTAAC
AAAGAGAGGCTAAAGAAGAAGACGAAATCATC
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protein sequence of NO21G01610.2

>NO21G01610.2-protein ID=NO21G01610.2-protein|Name=NO21G01610.2|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MILRAFSLPAILLLVFLCNCLLLMVLASAASAATTTIFIVNKILLGPVCP
RLFLQRLYSCHLTDRFRVASMSTSSTSPSRPKVIVITGPTAVGKSNLALT
LCRNASQSVTGEIITVDSVQVYRALDIGSNKPSKEEQAEVPHHLLDVLEP
NAPEAFTAGDFVRKAEEAIDDALARGRIPVVVGGTSMYTQWLVQGRPDAP
KSDPEVELKARGILAPFQNKNDWEGGLALLAARNPDRASKLHANDWYRLE
RALEVTFMTSPPSSFSSSSSCSSFNGVRSQSLTSKYDFRCFFLIAPREEL
CHVIDQRCLQMVEKGLLEETASLLSAGVLDPSSPPGRAIGYRQAIEYLSK
EGVKNKEEEAVALKVSRQERRLERFLFQLPA*
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mRNA from alignment at chr21:481824..484084+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01610.2 ID=NO21G01610.2|Name=NO21G01610.2|organism=Nannochloropsis oceanica|type=mRNA|length=2261bp|location=Sequence derived from alignment at chr21:481824..484084+ (Nannochloropsis oceanica)
TGATTGAGGGAGAGAGAGGGAGTCAGCATCGTGGTTCTGTACCCTAGGAG
GTGGCCTCGCCATCGCCAACAGAAGCAGATCGGTGCTGCCTTGTCCCAAT
GGAGCCCGACACAATCAACAGCAGCAAAACGAGCTACACTCGCACCAACA
CAACGAGCAGAAGGCGTGGATTGCAATCGCAGTGCTAAGGCACCGGGGTG
AAAAGGCAGAGCAGGCAAAACACATATCATGTATAGATCGACGTGGCATC
AAGGAGACTCTCGGAGGAGGTTATTAAAGGTCATTCAACCAATCTCACAA
AAAGTCTTATGAATCAAAATCAACCGGAAAATTAAAAACCTAAAACGAAC
ATACGCCATTCGCACATACATAGTGATAACAACGCCGATCATCCAGTGAC
CAAGGCCTTTTCCATGGCGGCATGATCCTCCGCGCCTTCTCCCTTCCTGC
AATCCTCCTCCTCGTCTTTCTCTGCAACTGCCTTCTATTAATGGTCCTCG
CCTCAGCAGCCTCAGCAGCCACTACAACCATTTTCATCGTGAACAAAATC
CTCCTTGGCCCTGTGTGCCCTCGCTTATTCCTACAGCGCTTGTACTCGTG
TCACCTTACCGACAGATTCCGCGTCGCCAGTATGTCTACCTCCTCCACCT
CTCCCTCACGACCCAAAGTCATTGTCATCACAGGCCCTACGGCCGTGGGC
AAATCCAACCTAGCTTTGACACTTTGTCGAAATGCCTCCCAGTCTGTGAC
AGGGGAGATAATTACGGTGGACTCCGTTCAAGTCTATCGAGCGTTGGATA
TTGGGTCGAACAAACCCTCAAAGGAAGAACAGGCTGAGGTCCCCCACCAC
TTACTCGATGTCCTGGAGCCCAATGCCCCCGAGGCCTTCACCGCGGGTGA
TTTCGTCCGGAAAGCAGAGGAAGCGATTGATGACGCTTTGGCACGCGGAA
GAATACCGGTGGTGGTAGGCGGGACGTCTATGTATACGCAGTGGCTGGTG
CAGGGACGGCCGGACGCCCCAAAGTCGGACCCTGAGGTGGAGTTAAAGGC
AAGAGGGATACTGGCACCTTTTCAGAACAAAAATGATTGGGAGGTTAGTG
ATGTGATATGTGGGGGGAAGCATAGGCTGTTGAGTGCCTTTTCTGAAGAT
ACAGGAAGTGGCCTACAAATTATTCCTTTTCCCCTTCTCTCCCCCCCCCT
TCCCACTTTTATCAACACACAGGGCGGCCTGGCTCTCTTAGCCGCCCGGA
ACCCCGATCGCGCCAGCAAGCTACATGCTAACGATTGGTACCGCCTTGAA
CGTGCCCTAGAGGTCACTTTCATGACTTCCCCCCCTTCCTCTTTCTCCTC
CTCCTCTTCCTGCTCCTCTTTTAATGGCGTCCGCTCCCAATCGCTAACCA
GCAAATACGACTTTCGCTGTTTTTTCCTCATAGCCCCGCGGGAAGAACTC
TGCCACGTCATAGATCAACGCTGTCTTCAAATGGTCGAAAAAGGGCTCCT
GGAAGAAACTGCCTCTCTGTTATCTGCAGGCGTCCTAGACCCTTCATCAC
CCCCAGGGCGCGCCATTGGCTATAGACAAGCAATTGAGTATTTGAGCAAG
GAAGGAGTGAAGAATAAGGAGGAGGAAGCTGTAGCATTGAAGGTAAGTAG
GCAGGAAAGGAGGTTAGAGAGGTTTCTTTTCCAACTACCGGCCTGAAATT
TTTTCCATCCCTGACTGAATTTTTATTTCATCCCCATATATCGTTTTACC
CCTTTCCTCCCTTCCTCCCTCCCACCCTCCCCCCCTCCCTCAGCTCTTCC
TCAAGGATTTTGCCACAGCCACCCGTCGCTACGCCAAGCAACAAATGGTG
TGGTATCGAGCGCAGCCTGAGTTCATCTGGTTGAGATGGAACCTGCTCGA
CCTCGCTCCCGCTCTCGCCTCCCTTCATGCCTCCTTTAAGGAGGACGAGA
TGAGTCATTTCGAGAGGAGGAGGGGGGGCGCGCAAGAAGCATTGAGGAAG
GAGAACATGATGGAAGGAAAGAGAATGAAGGCGTACACGTCGAAGATATT
GGAAGGACTGACAGGGGACAAGTTGGAAACGTTGGTTAGGAGAGCGACAG
ATTGCAGAGCGCAGGTGCTGGCAGCAGCAGCAGCTGCAGATAAAAGATAG
GGACAACGCGTCCATAGAGAGAGGAACAAGGGAGACCTAGAAAGGAGTTT
GGAAAAAAATGTGTACAGTAGGCCTTAACAAAGAGAGGCTAAAGAAGAAG
ACGAAATCATC
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Coding sequence (CDS) from alignment at chr21:481824..484084+

>NO21G01610.2 ID=NO21G01610.2|Name=NO21G01610.2|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr21:481824..484084+ (Nannochloropsis oceanica)
ATGATCCTCCGCGCCTTCTCCCTTCCTGCAATCCTCCTCCTCGTCTTTCT
CTGCAACTGCCTTCTATTAATGGTCCTCGCCTCAGCAGCCTCAGCAGCCA
CTACAACCATTTTCATCGTGAACAAAATCCTCCTTGGCCCTGTGTGCCCT
CGCTTATTCCTACAGCGCTTGTACTCGTGTCACCTTACCGACAGATTCCG
CGTCGCCAGTATGTCTACCTCCTCCACCTCTCCCTCACGACCCAAAGTCA
TTGTCATCACAGGCCCTACGGCCGTGGGCAAATCCAACCTAGCTTTGACA
CTTTGTCGAAATGCCTCCCAGTCTGTGACAGGGGAGATAATTACGGTGGA
CTCCGTTCAAGTCTATCGAGCGTTGGATATTGGGTCGAACAAACCCTCAA
AGGAAGAACAGGCTGAGGTCCCCCACCACTTACTCGATGTCCTGGAGCCC
AATGCCCCCGAGGCCTTCACCGCGGGTGATTTCGTCCGGAAAGCAGAGGA
AGCGATTGATGACGCTTTGGCACGCGGAAGAATACCGGTGGTGGTAGGCG
GGACGTCTATGTATACGCAGTGGCTGGTGCAGGGACGGCCGGACGCCCCA
AAGTCGGACCCTGAGGTGGAGTTAAAGGCAAGAGGGATACTGGCACCTTT
TCAGAACAAAAATGATTGGGAGGGCGGCCTGGCTCTCTTAGCCGCCCGGA
ACCCCGATCGCGCCAGCAAGCTACATGCTAACGATTGGTACCGCCTTGAA
CGTGCCCTAGAGGTCACTTTCATGACTTCCCCCCCTTCCTCTTTCTCCTC
CTCCTCTTCCTGCTCCTCTTTTAATGGCGTCCGCTCCCAATCGCTAACCA
GCAAATACGACTTTCGCTGTTTTTTCCTCATAGCCCCGCGGGAAGAACTC
TGCCACGTCATAGATCAACGCTGTCTTCAAATGGTCGAAAAAGGGCTCCT
GGAAGAAACTGCCTCTCTGTTATCTGCAGGCGTCCTAGACCCTTCATCAC
CCCCAGGGCGCGCCATTGGCTATAGACAAGCAATTGAGTATTTGAGCAAG
GAAGGAGTGAAGAATAAGGAGGAGGAAGCTGTAGCATTGAAGGTAAGTAG
GCAGGAAAGGAGGTTAGAGAGGTTTCTTTTCCAACTACCGGCCTGA
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Synonyms
Publications