NO21G01510.1, NO21G01510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01510.1
Unique NameNO21G01510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length948
Alignment locationchr21:454246..455487 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:454246..455487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01510.1 vs.
Match: EWM22645.1 (Proteasome, beta-type subunit, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 355.1 bits (910), Expect = 2.200e-94
Identity = 181/271 (66.79%), Postives = 210/271 (77.49%), Query Frame = 0 
Query:   49 LDEEPYLPFVGSGIKPSCRSSSSDASGMVT---DSWLSSLEASLPTHRPQAYKWGPEMVEDNGGTVLALAGSDYCIIGADTRLSSDYRIRTRNVSRLMEVSSHTYMGMAGSWADSTALRREMAYDLSCFEAKHGRPIGTAALGTFLSNCLYLHRLQPMYALNLVAGLDDKGRGAIYSYDVIGSFNRVAAACCGRGQELMQPVLDQFTTEDRNQSVRQGCVPLSCEEALRVMKDAFLSGAEREISIGDGVEIVVLRKGH-RPRVEKLKLPQH 316
            LD+ P LP  G      CR     A    T   D + SSLE  LPT R Q Y+W P+MVEDNGGTV+A+AG DYCI+ ADTRLSSDYRIRTRNVSRL+E+S  T++GMAGSWAD T LR E+AYDLSCFEAKHG  IGTAAL TFLSN LY+HRLQP+YALNLVAGL+  G+GA+YSYDVIGSFNRV AACCGRGQEL+QPVLDQF  +D N+ +     PLSCEEA +V+K+AFLSGAEREISIGDGV IV+++KG   PR+E   LP+H
Sbjct:   57 LDDGPRLPIPGF-----CRDGERPAGYFRTTSGDFYGSSLEKFLPTRRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNK-LNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFALPRH 321
The following BLAST results are available for this feature:
BLAST of NO21G01510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22645.12.200e-9466.79Proteasome, beta-type subunit, conserved site [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01510NO21G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01510.1NO21G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01510.1.cds1NO21G01510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01510.1.cds2NO21G01510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01510.1.cds3NO21G01510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01510.1.cds4NO21G01510.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01510.1 ID=NO21G01510.1|Name=NO21G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=948bp
ATGGGTTGCGCAACTGCGCGTGGTAGTGTTGTCTTCGTTGTCCTACCCCT
CGTCCTCACTTCTCTCCTTCTCCATCCTTCTCAAGCCCGCTACTCGTTAT
CGTCGTCCTCCTCGACAAGCGGACCTTCCATTTGGGGCGCCATCCTAGAC
GAAGAGCCTTACCTACCCTTTGTAGGAAGTGGGATAAAACCTTCCTGCAG
AAGTTCAAGCTCGGATGCCTCGGGCATGGTTACCGACTCTTGGTTGTCCT
CCCTCGAGGCGTCGCTTCCGACGCACCGCCCTCAAGCTTACAAATGGGGG
CCCGAGATGGTGGAGGACAACGGCGGCACGGTCCTAGCATTGGCCGGGTC
CGATTATTGCATTATCGGGGCAGATACGCGGTTGAGCTCCGATTATCGGA
TTCGGACGCGGAATGTGAGTCGGCTGATGGAGGTGTCGTCGCACACGTAC
ATGGGCATGGCGGGGAGCTGGGCAGATTCGACGGCCTTGCGTCGCGAGAT
GGCGTATGACTTGAGCTGCTTCGAAGCTAAGCATGGACGGCCGATTGGTA
CGGCGGCCCTTGGCACATTCTTGTCGAATTGCCTCTATTTGCACCGCCTG
CAGCCTATGTATGCCCTCAATTTGGTCGCGGGTTTGGATGATAAAGGCCG
GGGCGCTATTTACAGCTATGACGTTATTGGTTCGTTTAATCGAGTAGCCG
CCGCGTGCTGTGGCAGGGGGCAGGAATTGATGCAGCCTGTCCTGGATCAG
TTCACGACCGAAGATCGTAATCAGAGCGTACGACAGGGGTGTGTGCCCTT
GTCGTGTGAAGAGGCACTGAGGGTGATGAAGGACGCGTTTTTGTCCGGGG
CCGAAAGAGAGATAAGCATTGGGGATGGGGTGGAGATTGTGGTTTTGCGA
AAAGGACACCGACCTAGGGTGGAGAAATTAAAGCTACCACAGCACTGA
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protein sequence of NO21G01510.1

>NO21G01510.1-protein ID=NO21G01510.1-protein|Name=NO21G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MGCATARGSVVFVVLPLVLTSLLLHPSQARYSLSSSSSTSGPSIWGAILD
EEPYLPFVGSGIKPSCRSSSSDASGMVTDSWLSSLEASLPTHRPQAYKWG
PEMVEDNGGTVLALAGSDYCIIGADTRLSSDYRIRTRNVSRLMEVSSHTY
MGMAGSWADSTALRREMAYDLSCFEAKHGRPIGTAALGTFLSNCLYLHRL
QPMYALNLVAGLDDKGRGAIYSYDVIGSFNRVAAACCGRGQELMQPVLDQ
FTTEDRNQSVRQGCVPLSCEEALRVMKDAFLSGAEREISIGDGVEIVVLR
KGHRPRVEKLKLPQH*
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mRNA from alignment at chr21:454246..455487+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01510.1 ID=NO21G01510.1|Name=NO21G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp|location=Sequence derived from alignment at chr21:454246..455487+ (Nannochloropsis oceanica)
ATGGGTTGCGCAACTGCGCGTGGTAGTGTTGTCTTCGTTGTCCTACCCCT
CGTCCTCACTTCTCTCCTTCTCCATCCTTCTCAAGCCCGCTACTCGTTAT
CGTCGTCCTCCTCGACAAGCGGACCTTCCATTTGGGGCGCCATCCTAGAC
GAAGAGCCTTACCTACCCTTTGTAGGAAGTGGGATAAAACCTTCCTGCAG
AAGTTCAAGCTCGGATGCCTCGGGCATGGTTACCGACTCTTGGTTGTCCT
CCCTCGAGGCGTCGCTTCCGACGCACCGCCCTCAAGCTTACAAATGGGGG
CCCGAGATGGTGGAGGACAACGGCGGCACGGTCCTAGCATTGGCCGGGTC
CGATTATTGCATTATCGGGGCAGATACGCGGTTGAGCTCCGATTATCGGA
TTCGGACGCGGAATGTGAGTCGGCTGATGGAGGTGTCGTCGCACACGTAC
ATGGGCATGGCGGGGAGCTGGGCAGATTCGACGGCCTTGCGTCGCGAGGT
AAGAAACATGAGTACGGTCAAATCAGGTCACTTCCTACTGCGAACTTTAT
ACTGCTTTGATGAATTTAAGGTCCTGATTTACTTGTCTTTCTACTCCATT
CGTAATGGACTAGATGGCGTATGACTTGAGCTGCTTCGAAGCTAAGCATG
GACGGCCGATTGGTACGGCGGCCCTTGGCACATTCTTGTCGAATTGCCTC
TATTTGCACCGCCTGCAGCCTATGTATGCCCTCAATTTGGTCGCGGGTTT
GGATGATAAAGGTAGGGGAGGAATGAATGGAAAGCAGAGGCGGACCTCTT
TCTCATCGCGCACTCACATCTTTCTTTTTCTTTCTCTCCATCCACATACA
CCACACCAGGCCGGGGCGCTATTTACAGCTATGACGTTATTGGTTCGTTT
AATCGAGTAGCCGCCGCGTGCTGTGGCAGGGGGCAGGTGAGTATAATGTA
CACGGCAAGGAACCTCCAAAGTACCAACATCCTCCCTTCCCTCCCTTCAC
TCCATGCCCATTTCCAGGAATTGATGCAGCCTGTCCTGGATCAGTTCACG
ACCGAAGATCGTAATCAGAGCGTACGACAGGGGTGTGTGCCCTTGTCGTG
TGAAGAGGCACTGAGGGTGATGAAGGACGCGTTTTTGTCCGGGGCCGAAA
GAGAGATAAGCATTGGGGATGGGGTGGAGATTGTGGTTTTGCGAAAAGGA
CACCGACCTAGGGTGGAGAAATTAAAGCTACCACAGCACTGA
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Coding sequence (CDS) from alignment at chr21:454246..455487+

>NO21G01510.1 ID=NO21G01510.1|Name=NO21G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr21:454246..455487+ (Nannochloropsis oceanica)
ATGGGTTGCGCAACTGCGCGTGGTAGTGTTGTCTTCGTTGTCCTACCCCT
CGTCCTCACTTCTCTCCTTCTCCATCCTTCTCAAGCCCGCTACTCGTTAT
CGTCGTCCTCCTCGACAAGCGGACCTTCCATTTGGGGCGCCATCCTAGAC
GAAGAGCCTTACCTACCCTTTGTAGGAAGTGGGATAAAACCTTCCTGCAG
AAGTTCAAGCTCGGATGCCTCGGGCATGGTTACCGACTCTTGGTTGTCCT
CCCTCGAGGCGTCGCTTCCGACGCACCGCCCTCAAGCTTACAAATGGGGG
CCCGAGATGGTGGAGGACAACGGCGGCACGGTCCTAGCATTGGCCGGGTC
CGATTATTGCATTATCGGGGCAGATACGCGGTTGAGCTCCGATTATCGGA
TTCGGACGCGGAATGTGAGTCGGCTGATGGAGGTGTCGTCGCACACGTAC
ATGGGCATGGCGGGGAGCTGGGCAGATTCGACGGCCTTGCGTCGCGAGAT
GGCGTATGACTTGAGCTGCTTCGAAGCTAAGCATGGACGGCCGATTGGTA
CGGCGGCCCTTGGCACATTCTTGTCGAATTGCCTCTATTTGCACCGCCTG
CAGCCTATGTATGCCCTCAATTTGGTCGCGGGTTTGGATGATAAAGGCCG
GGGCGCTATTTACAGCTATGACGTTATTGGTTCGTTTAATCGAGTAGCCG
CCGCGTGCTGTGGCAGGGGGCAGGAATTGATGCAGCCTGTCCTGGATCAG
TTCACGACCGAAGATCGTAATCAGAGCGTACGACAGGGGTGTGTGCCCTT
GTCGTGTGAAGAGGCACTGAGGGTGATGAAGGACGCGTTTTTGTCCGGGG
CCGAAAGAGAGATAAGCATTGGGGATGGGGTGGAGATTGTGGTTTTGCGA
AAAGGACACCGACCTAGGGTGGAGAAATTAAAGCTACCACAGCACTGA
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Synonyms
Publications