NO21G01470.1, NO21G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01470.1
Unique NameNO21G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1063
Alignment locationchr21:442946..444008 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:442946..444008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01470.1 vs.
Match: EWM22648.1 (proteasome subunit beta type 5 [Nannochloropsis gaditana])

HSP 1 Score: 515.4 bits (1326), Expect = 1.100e-142
Identity = 247/278 (88.85%), Postives = 261/278 (93.88%), Query Frame = 0 
Query:    1 MHGIGTEILDLGKSLKAAAEPGSAMPPQAKAEEGGFLLPAVEDPAAFCKANFGVGYGIDNHQELKFAKGTTTLAFKFDHGIIVAVDSRSTQGAYVASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRLYELRHKERISVAAASKLLANTVMQYRGYGLSMGTMITGWDKTGPQLYYVDNDGMRLKGDLFSVGSGSTYAYGVLDANYRKDLSAEDAIELGRRAIYHATHRDAYSGGVINVYHVQEQGWVKVFSGDCVDLHYKYQEEKVTRMVM 279
            MH IGT+ILDLGKSL+A  + G+ + P AKAEE GFLLPAVEDPA+FCK NFGVGYG D HQELKFAKGTTTLAFKFD GI+VAVDSRSTQGAYVASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRLYELRHKERISVAAASKLLANTVMQYRGYGLSMGTMITGWDKTGPQL+YVDNDGMRLKG+LFSVGSGSTYAYGVLDA+YRKDLSA++AIELGRRAIYHATHRDAYSGG+INVYHVQEQGWVKVFSGDC +LHYKYQEEK   M M
Sbjct:    1 MHAIGTDILDLGKSLRAGGKRGAILSPHAKAEEAGFLLPAVEDPASFCKTNFGVGYGTDQHQELKFAKGTTTLAFKFDGGIVVAVDSRSTQGAYVASGTVKKVIEINPYLLGTMAGGAADCSFWERNLGIQCRLYELRHKERISVAAASKLLANTVMQYRGYGLSMGTMITGWDKTGPQLFYVDNDGMRLKGNLFSVGSGSTYAYGVLDAHYRKDLSADEAIELGRRAIYHATHRDAYSGGIINVYHVQEQGWVKVFSGDCNELHYKYQEEKTASMAM 278
The following BLAST results are available for this feature:
BLAST of NO21G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22648.11.100e-14288.85proteasome subunit beta type 5 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01470NO21G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01470.1NO21G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01470.1.cds1NO21G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01470.1 ID=NO21G01470.1|Name=NO21G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp
AACAGAACACAGGCAGAGAATCTCCTCCTATCTCCTCTACTTCTCCTCCC
CTACTATTTTCTACAATGCACGGCATTGGTACCGAGATTTTGGACCTGGG
CAAGTCCCTCAAGGCTGCGGCAGAGCCCGGGTCCGCCATGCCCCCTCAGG
CCAAGGCGGAAGAGGGTGGCTTTTTGCTGCCGGCAGTGGAGGACCCTGCT
GCATTCTGCAAGGCCAACTTTGGGGTGGGGTACGGCATAGACAATCACCA
AGAGCTCAAATTTGCGAAGGGTACAACCACCCTGGCTTTCAAATTTGATC
ATGGCATCATCGTTGCGGTGGATTCCCGGTCGACGCAAGGTGCTTATGTG
GCCTCGGGCACGGTCAAAAAGGTGATTGAGATCAACCCTTACTTGCTAGG
GACCATGGCGGGCGGCGCCGCGGACTGCTCTTTCTGGGAGCGGAACTTAG
GCATTCAGTGCCGGCTTTATGAGCTGCGTCACAAGGAGCGTATCTCTGTG
GCGGCTGCGAGCAAGCTGCTGGCTAACACGGTGATGCAATACCGAGGCTA
TGGGCTGTCAATGGGGACTATGATTACGGGGTGGGACAAGACCGGCCCCC
AGCTTTACTATGTCGACAACGACGGCATGCGCCTCAAGGGTGACCTCTTC
TCGGTGGGTTCTGGGTCAACCTATGCCTATGGTGTGTTAGACGCAAACTA
CCGCAAGGACTTGAGTGCAGAGGATGCGATTGAGTTGGGACGGCGCGCCA
TTTATCACGCCACCCACCGGGATGCGTACTCAGGAGGGGTCATCAATGTG
TACCACGTGCAGGAGCAGGGGTGGGTGAAGGTGTTTTCTGGTGACTGTGT
AGATCTGCATTACAAGTACCAAGAGGAGAAGGTCACAAGGATGGTTATGT
AAACAAATATCGAAGAGGAGGAGGGAGGGAGGCGGGGAGGGAGGCAGAAA
TGGCGTGATGGAACAAAAAGGAGAAAGTAGAGAATCCAGTAGGTTCCAGA
GCAAACGCGCTATTGGATGGACCAGGTAGGAAAGAAGGAAACATGAAAAT
GGTTAAGCGGCAA
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protein sequence of NO21G01470.1

>NO21G01470.1-protein ID=NO21G01470.1-protein|Name=NO21G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MHGIGTEILDLGKSLKAAAEPGSAMPPQAKAEEGGFLLPAVEDPAAFCKA
NFGVGYGIDNHQELKFAKGTTTLAFKFDHGIIVAVDSRSTQGAYVASGTV
KKVIEINPYLLGTMAGGAADCSFWERNLGIQCRLYELRHKERISVAAASK
LLANTVMQYRGYGLSMGTMITGWDKTGPQLYYVDNDGMRLKGDLFSVGSG
STYAYGVLDANYRKDLSAEDAIELGRRAIYHATHRDAYSGGVINVYHVQE
QGWVKVFSGDCVDLHYKYQEEKVTRMVM*
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mRNA from alignment at chr21:442946..444008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01470.1 ID=NO21G01470.1|Name=NO21G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp|location=Sequence derived from alignment at chr21:442946..444008- (Nannochloropsis oceanica)
AACAGAACACAGGCAGAGAATCTCCTCCTATCTCCTCTACTTCTCCTCCC
CTACTATTTTCTACAATGCACGGCATTGGTACCGAGATTTTGGACCTGGG
CAAGTCCCTCAAGGCTGCGGCAGAGCCCGGGTCCGCCATGCCCCCTCAGG
CCAAGGCGGAAGAGGGTGGCTTTTTGCTGCCGGCAGTGGAGGACCCTGCT
GCATTCTGCAAGGCCAACTTTGGGGTGGGGTACGGCATAGACAATCACCA
AGAGCTCAAATTTGCGAAGGGTACAACCACCCTGGCTTTCAAATTTGATC
ATGGCATCATCGTTGCGGTGGATTCCCGGTCGACGCAAGGTGCTTATGTG
GCCTCGGGCACGGTCAAAAAGGTGATTGAGATCAACCCTTACTTGCTAGG
GACCATGGCGGGCGGCGCCGCGGACTGCTCTTTCTGGGAGCGGAACTTAG
GCATTCAGTGCCGGCTTTATGAGCTGCGTCACAAGGAGCGTATCTCTGTG
GCGGCTGCGAGCAAGCTGCTGGCTAACACGGTGATGCAATACCGAGGCTA
TGGGCTGTCAATGGGGACTATGATTACGGGGTGGGACAAGACCGGCCCCC
AGCTTTACTATGTCGACAACGACGGCATGCGCCTCAAGGGTGACCTCTTC
TCGGTGGGTTCTGGGTCAACCTATGCCTATGGTGTGTTAGACGCAAACTA
CCGCAAGGACTTGAGTGCAGAGGATGCGATTGAGTTGGGACGGCGCGCCA
TTTATCACGCCACCCACCGGGATGCGTACTCAGGAGGGGTCATCAATGTG
TACCACGTGCAGGAGCAGGGGTGGGTGAAGGTGTTTTCTGGTGACTGTGT
AGATCTGCATTACAAGTACCAAGAGGAGAAGGTCACAAGGATGGTTATGT
AAACAAATATCGAAGAGGAGGAGGGAGGGAGGCGGGGAGGGAGGCAGAAA
TGGCGTGATGGAACAAAAAGGAGAAAGTAGAGAATCCAGTAGGTTCCAGA
GCAAACGCGCTATTGGATGGACCAGGTAGGAAAGAAGGAAACATGAAAAT
GGTTAAGCGGCAA
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Coding sequence (CDS) from alignment at chr21:442946..444008-

>NO21G01470.1 ID=NO21G01470.1|Name=NO21G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr21:442946..444008- (Nannochloropsis oceanica)
ATGCACGGCATTGGTACCGAGATTTTGGACCTGGGCAAGTCCCTCAAGGC
TGCGGCAGAGCCCGGGTCCGCCATGCCCCCTCAGGCCAAGGCGGAAGAGG
GTGGCTTTTTGCTGCCGGCAGTGGAGGACCCTGCTGCATTCTGCAAGGCC
AACTTTGGGGTGGGGTACGGCATAGACAATCACCAAGAGCTCAAATTTGC
GAAGGGTACAACCACCCTGGCTTTCAAATTTGATCATGGCATCATCGTTG
CGGTGGATTCCCGGTCGACGCAAGGTGCTTATGTGGCCTCGGGCACGGTC
AAAAAGGTGATTGAGATCAACCCTTACTTGCTAGGGACCATGGCGGGCGG
CGCCGCGGACTGCTCTTTCTGGGAGCGGAACTTAGGCATTCAGTGCCGGC
TTTATGAGCTGCGTCACAAGGAGCGTATCTCTGTGGCGGCTGCGAGCAAG
CTGCTGGCTAACACGGTGATGCAATACCGAGGCTATGGGCTGTCAATGGG
GACTATGATTACGGGGTGGGACAAGACCGGCCCCCAGCTTTACTATGTCG
ACAACGACGGCATGCGCCTCAAGGGTGACCTCTTCTCGGTGGGTTCTGGG
TCAACCTATGCCTATGGTGTGTTAGACGCAAACTACCGCAAGGACTTGAG
TGCAGAGGATGCGATTGAGTTGGGACGGCGCGCCATTTATCACGCCACCC
ACCGGGATGCGTACTCAGGAGGGGTCATCAATGTGTACCACGTGCAGGAG
CAGGGGTGGGTGAAGGTGTTTTCTGGTGACTGTGTAGATCTGCATTACAA
GTACCAAGAGGAGAAGGTCACAAGGATGGTTATGTAA
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Synonyms
Publications