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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr21 | genome | chr21:420260..423442 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01400.1 vs.
Match: EWM22671.1 (hypothetical protein Naga_100023g16 [Nannochloropsis gaditana]) HSP 1 Score: 519.6 bits (1337), Expect = 1.000e-143 Identity = 293/490 (59.80%), Postives = 350/490 (71.43%), Query Frame = 0
Query: 1 MPSSTTKAKREVAAAKVVQGNARSKTPAPRPPTTGSKKATTPKRATTPKRATTPKRATTPKRTAVSKKATPKRGTPSKRQAAEAEEVV--ASDEASGTISLLVSPTKRVRTPSSKHENKDNDESCDGNLDARRLDEAKDELELGRTTRLFAEGIGDSDVD-GNSGSSKDPIEGEVEALPALFATPQKTKNQKTFGTPSSVQCSPSVKNAYSIVRRCTGSLGGNGSGGAIYGELTTGSMQKVVDVMISHCGLGKDSIFIDVGAGLGKPNIHVAQYPGVAASYGIEHEQVRWQLSLHNLKHLLQAAETEAEEISVTAAAAVEAEAEEAAAATAAVA-AANKINHKIFFHYGDVTEARTLDPFTHVYMFDIGFPPALFYEIADRFNASHCPFLICYHGPKLIAERYGFDVSLLTQIQTSMHGSSEGHTAYFYKRAKPHPAPPARRPVDALFKQGLDLIGQSSVEKLHSWVKQKMDSHFTSPRPVRQRRYTNLF 487
M S+ K K E K RSK RPPTTGSKKATTPK+ TTPKRAT KK+ K+ SK + A A +++ + + T L SPTKR PS K + C + D +E L+LGR LF++ G++DVD G+ K+ + + +LF+TPQK ++ K+F TP+S+QCSPSVKN YSI+RRCTGSLGGNGSGGAIYGELTTGSMQ+VVD+M++HC LG+DSIFID+GAGLGKPNIHV+QYPGVAASYGIEHEQVRWQLSLHNL+HLLQAA EA++ A A E AE + + + A+++INHKIFFHYGDVTEARTLDPFTHVYMFDIGFPP LFYEIADRFN S CPFLICYHGPKLI +RYGFDV+L++Q+QTSMHGSSEGHTAY YKR K PVDALFK+GLD+I + S+E LH+WVKQKMD HFTSPRP R+RR TNLF
Sbjct: 1 MSGSSIKVKDE--QGKSFDLPLRSKNSGRRPPTTGSKKATTPKKVTTPKRAT-------------PKKSMSKQSQRSKSKQAGAADLMFAGGNSLADTEFSLASPTKRTGLPSFPPSQK--NAGCAEDKD----EEDSGNLKLGRKIYLFSDNDGEADVDFEKKGTGKEENGAKDDCPHSLFSTPQKPRSTKSFATPTSIQCSPSVKNVYSIIRRCTGSLGGNGSGGAIYGELTTGSMQRVVDMMVTHCALGRDSIFIDIGAGLGKPNIHVSQYPGVAASYGIEHEQVRWQLSLHNLRHLLQAAGAEAKDGETADAKADERGAEMSGSGRISEEFASSRINHKIFFHYGDVTEARTLDPFTHVYMFDIGFPPTLFYEIADRFNISQCPFLICYHGPKLIVDRYGFDVTLISQVQTSMHGSSEGHTAYCYKRTKTKRRSLKVSPVDALFKEGLDMIREGSLESLHAWVKQKMDIHFTSPRPARRRRSTNLF 469
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01400.1 ID=NO21G01400.1|Name=NO21G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2999bp
TGGAATCACCCTGTCCCGGACTGCGTCCAGGACACCCAGCAGCTAGCAAC
GATGATCTTTTTCTGTAGTTTCCTACAATCCTAAAACTATCGCATCCTAC
TTTTTACACAAGCGTGCCTCCTCTTGGCGAAAGCTTCGAGTTTAGCCTTT
CCGTTTTCCCCAAGGGCTCGTGAGAATGTGCGGCCTGAAAGGTAAGATAC
ATAATTAAGCGTTCAACTATATCGTTACTGTCACGCACAAATGATACCAG
AGTAATCGCAGGCGGGAGGTTGAGCAGCTCGGAACGAGGCCGTTAACAGC
TTGGCCTGAAGCGACCAATTCTAAATGCGCAGCCAGCGTGTTTTATTTGT
GGCTGCGCAAGCACTTTGGGCCAGCACAACTCCAGCTTTATCTTGAACTG
ATGTAATGGCAGCTCTTTGCAGGCTGTGGAGAAATTTGCCAAAAGCAAGC
TCTCCCCGTGGCAGGTGTTTGTTCTTTGAGCTCTCTATCCACATGAACAA
CCACCATGCCCTTCTCGTTGTCTGTCGCAGAGATCTCATAACTCGTAGGT
ATTTCAGGCCTTCGTGAGGCGCAATTACAACGTCTCAAGAACAATCGGGC
AGTTTGTGACTGCCTCTTGTGTTACTGCGTGTCACTGGAGGCCAAAATGT
AGTCGCTTGCGCTTTTTCTCCGATGGTGCTGACTAGTGAATCGTGTGCTG
CTGCTACGCCTGCTGCTACGACCATGCGACGCACATATCGACACGCACCA
ACAAGCAAATGCACACGCATACCAAAATTCGGTGGCATCTGTTCACCAAG
CTTCTAAAAGTGTCAGGGCGTGCTTCGTGACTTGGTCCCTTATGTGATCG
TTGCAGACATAATAATCTCCCCAACAACCAGCATGCACACAAACGACTAA
TCTCTTGCGCTTCCCCCCCCACGCATAGTTTTTCGTCAAGCCTCCTTCCT
TCCCAAAACTATTCCACCCACTCAATATGCCGAGCTCCACTACCAAGGCC
AAGCGTGAGGTAGCTGCCGCCAAAGTAGTGCAAGGCAACGCCCGCAGCAA
GACCCCTGCCCCAAGGCCTCCAACCACGGGCAGCAAAAAGGCCACCACTC
CTAAACGTGCCACAACACCCAAACGAGCTACCACGCCCAAACGAGCCACC
ACGCCCAAACGAACTGCTGTATCCAAGAAGGCCACTCCCAAGCGCGGCAC
GCCCTCCAAGAGGCAAGCTGCCGAGGCAGAAGAGGTTGTTGCGAGCGACG
AGGCATCAGGCACAATCTCCCTCCTCGTGTCGCCTACCAAGCGCGTCCGC
ACACCTTCGTCCAAGCATGAAAATAAGGACAACGATGAGAGCTGTGATGG
CAATCTTGACGCTAGGAGACTAGACGAGGCCAAAGACGAGCTGGAGCTGG
GGCGGACTACACGTCTCTTTGCCGAAGGCATCGGCGACTCGGACGTTGAT
GGCAACAGCGGCAGCAGCAAGGACCCGATCGAGGGGGAGGTTGAAGCCTT
GCCCGCTCTGTTTGCCACTCCGCAAAAAACCAAGAACCAGAAAACCTTCG
GTACCCCCAGCTCCGTCCAGTGCTCGCCCTCGGTGAAGAACGCCTACTCC
ATCGTGCGGCGCTGCACAGGCTCGCTGGGCGGGAACGGGAGTGGAGGTGC
CATCTACGGGGAGCTGACCACGGGCAGCATGCAGAAAGTGGTAGACGTGA
TGATCTCACACTGCGGCCTCGGCAAGGACAGCATCTTCATCGATGTAGGT
GCTGGCCTGGGCAAGCCCAACATCCACGTGGCCCAATACCCTGGTGTGGC
CGCTTCCTACGGCATCGAGCACGAGCAGGTGCGCTGGCAGCTCTCGCTTC
ACAATCTTAAGCACCTCCTCCAGGCAGCTGAGACCGAGGCCGAGGAGATA
TCCGTCACTGCAGCTGCAGCAGTGGAAGCGGAGGCGGAAGAAGCAGCAGC
AGCCACAGCTGCGGTGGCGGCAGCAAACAAGATCAATCACAAGATTTTCT
TCCACTACGGCGATGTGACCGAGGCCCGCACGCTCGATCCCTTTACACAT
GTGTACATGTTCGACATCGGCTTCCCGCCTGCGCTTTTCTACGAAATTGC
CGACAGGTTCAACGCCTCGCACTGCCCCTTCCTCATCTGCTATCACGGCC
CGAAGCTCATCGCCGAGCGCTACGGCTTCGACGTCAGCCTTCTCACGCAG
ATTCAGACCTCTATGCACGGCTCCAGCGAAGGTCATACCGCCTACTTTTA
CAAGCGCGCCAAACCCCATCCTGCACCGCCTGCCCGGAGGCCGGTCGATG
CGCTCTTCAAGCAGGGCCTGGACTTGATTGGCCAGAGCTCGGTGGAGAAG
CTGCACTCTTGGGTAAAACAGAAGATGGATTCTCACTTTACCAGTCCGCG
GCCCGTGCGTCAGCGCCGTTATACAAATCTGTTTGACTAGTAGTCTGTGG
AGGAGACAGGAAGAAGTGGTGCGGGAATTTGTGTCTGCTTGCCGAATGAT
TGTGGACGTACTTCTCTTATTGATAGTACCCCTGTCAGAGTACTCTAATA
ATGTAAATGTGCAGTGTGACCTGTGTGATATCTGGTTGTGTGTTCGCAAA
TTCAGATTGGCTGGTGGGCGAAAGATAACAGCGAGTGAGAGGGTTGTGTG
CCTTCGAAAAAAGACTTGTTTCCAATAATAGATGGTGCACGGGGCAATGG
GCAAATTTGGTTGTAATTTCCGCCCTCGTTCTCCAACAAGGTAGCAGAGA
AGAAAGTGATTTTCTTGGATGTGGCTTACATATTCCAAATGGGATATTTA
AGAGACAAGAAAGAGAGAGTCGAAGCCTCGTCGCAATGCCGGTAACTGTG
TGAGGAAGGGAAAAAACGCAGAGGAATTACCTCGTCCTCCGTGCCCCTTA
TGGGATCTATCAACAGCAGAGAGATGGCATTGAAACGACTGATGCCCGGA
AAGGGAACTCAAAGAACAAAACTAGTTTTTATTGACGGTGCAATTTGCT back to topprotein sequence of NO21G01400.1 >NO21G01400.1-protein ID=NO21G01400.1-protein|Name=NO21G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MPSSTTKAKREVAAAKVVQGNARSKTPAPRPPTTGSKKATTPKRATTPKR
ATTPKRATTPKRTAVSKKATPKRGTPSKRQAAEAEEVVASDEASGTISLL
VSPTKRVRTPSSKHENKDNDESCDGNLDARRLDEAKDELELGRTTRLFAE
GIGDSDVDGNSGSSKDPIEGEVEALPALFATPQKTKNQKTFGTPSSVQCS
PSVKNAYSIVRRCTGSLGGNGSGGAIYGELTTGSMQKVVDVMISHCGLGK
DSIFIDVGAGLGKPNIHVAQYPGVAASYGIEHEQVRWQLSLHNLKHLLQA
AETEAEEISVTAAAAVEAEAEEAAAATAAVAAANKINHKIFFHYGDVTEA
RTLDPFTHVYMFDIGFPPALFYEIADRFNASHCPFLICYHGPKLIAERYG
FDVSLLTQIQTSMHGSSEGHTAYFYKRAKPHPAPPARRPVDALFKQGLDL
IGQSSVEKLHSWVKQKMDSHFTSPRPVRQRRYTNLFD* back to topmRNA from alignment at chr21:420260..423442- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01400.1 ID=NO21G01400.1|Name=NO21G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=3183bp|location=Sequence derived from alignment at chr21:420260..423442- (Nannochloropsis oceanica)
TGGAATCACCCTGTCCCGGACTGCGTCCAGGACACCCAGCAGCTAGCAAC
GATGATCTTTTTCTGTAGTTTCCTACAATCCTAAAACTATCGCATCCTAC
TTTTTACACAAGCGTGCCTCCTCTTGGCGAAAGCTTCGAGTTTAGCCTTT
CCGTTTTCCCCAAGGGCTCGTGAGAATGTGCGGCCTGAAAGGTAAGATAC
ATAATTAAGCGTTCAACTATATCGTTACTGTCACGCACAAATGATACCAG
AGTAATCGCAGGCGGGAGGTTGAGCAGCTCGGAACGAGGCCGTTAACAGC
TTGGCCTGAAGCGACCAATTCTAAATGCGCAGCCAGCGTGTTTTATTTGT
GGCTGCGCAAGCACTTTGGGCCAGCACAACTCCAGCTTTATCTTGAACTG
ATGTAATGGCAGCTCTTTGCAGGCTGTGGAGAAATTTGCCAAAAGCAAGC
TCTCCCCGTGGCAGGTGTTTGTTCTTTGAGCTCTCTATCCACATGAACAA
CCACCATGCCCTTCTCGTTGTCTGTCGCAGAGATCTCATAACTCGTAGGT
ATTTCAGGCCTTCGTGAGGCGCAATTACAACGTCTCAAGAACAATCGGGC
AGTTTGTGACTGCCTCTTGTGTTACTGCGTGTCACTGGAGGCCAAAATGT
AGTCGCTTGCGCTTTTTCTCCGATGGTGCTGACTAGTGAATCGTGTGCTG
CTGCTACGCCTGCTGCTACGACCATGCGACGCACATATCGACACGCACCA
ACAAGCAAATGCACACGCATACCAAAATTCGGTGGCATCTGTTCACCAAG
CTTCTAAAAGTGTCAGGGCGTGCTTCGTGACTTGGTCCCTTATGTGATCG
TTGCAGACATAATAATCTCCCCAACAACCAGCATGCACACAAACGACTAA
TCTCTTGCGCTTCCCCCCCCACGCATAGTTTTTCGTCAAGCCTCCTTCCT
TCCCAAAACTATTCCACCCACTCAATATGCCGAGCTCCACTACCAAGGCC
AAGCGTGAGGTAGCTGCCGCCAAAGTAGTGCAAGGCAACGCCCGCAGCAA
GACCCCTGCCCCAAGGCCTCCAACCACGGGCAGCAAAAAGGCCACCACTC
CTAAACGTGCCACAACACCCAAACGAGCTACCACGCCCAAACGAGCCACC
ACGCCCAAACGAACTGCTGTATCCAAGAAGGCCACTCCCAAGCGCGGCAC
GCCCTCCAAGAGGTATGAGAGTCGGCAGTTTTGGTGGGGGAAGATGGTGA
AATTGGTAGGGTGGTCGTTATTACATAGCCCCCGAATAGAGATGTCTGAC
AGCCTGGATCGTTTCTTATCGACAGAGGGAAGCTTATAAAATTCACCTAT
CGACTCATCCTTTCTATCGCGTTCGCGTTTCCGACGAATATAATAGGCAA
GCTGCCGAGGCAGAAGAGGTTGTTGCGAGCGACGAGGCATCAGGCACAAT
CTCCCTCCTCGTGTCGCCTACCAAGCGCGTCCGCACACCTTCGTCCAAGC
ATGAAAATAAGGACAACGATGAGAGCTGTGATGGCAATCTTGACGCTAGG
AGACTAGACGAGGCCAAAGACGAGCTGGAGCTGGGGCGGACTACACGTCT
CTTTGCCGAAGGCATCGGCGACTCGGACGTTGATGGCAACAGCGGCAGCA
GCAAGGACCCGATCGAGGGGGAGGTTGAAGCCTTGCCCGCTCTGTTTGCC
ACTCCGCAAAAAACCAAGAACCAGAAAACCTTCGGTACCCCCAGCTCCGT
CCAGTGCTCGCCCTCGGTGAAGAACGCCTACTCCATCGTGCGGCGCTGCA
CAGGCTCGCTGGGCGGGAACGGGAGTGGAGGTGCCATCTACGGGGAGCTG
ACCACGGGCAGCATGCAGAAAGTGGTAGACGTGATGATCTCACACTGCGG
CCTCGGCAAGGACAGCATCTTCATCGATGTAGGTGCTGGCCTGGGCAAGC
CCAACATCCACGTGGCCCAATACCCTGGTGTGGCCGCTTCCTACGGCATC
GAGCACGAGCAGGTGCGCTGGCAGCTCTCGCTTCACAATCTTAAGCACCT
CCTCCAGGCAGCTGAGACCGAGGCCGAGGAGATATCCGTCACTGCAGCTG
CAGCAGTGGAAGCGGAGGCGGAAGAAGCAGCAGCAGCCACAGCTGCGGTG
GCGGCAGCAAACAAGATCAATCACAAGATTTTCTTCCACTACGGCGATGT
GACCGAGGCCCGCACGCTCGATCCCTTTACACATGTGTACATGTTCGACA
TCGGCTTCCCGCCTGCGCTTTTCTACGAAATTGCCGACAGGTTCAACGCC
TCGCACTGCCCCTTCCTCATCTGCTATCACGGCCCGAAGCTCATCGCCGA
GCGCTACGGCTTCGACGTCAGCCTTCTCACGCAGATTCAGACCTCTATGC
ACGGCTCCAGCGAAGGTCATACCGCCTACTTTTACAAGCGCGCCAAACCC
CATCCTGCACCGCCTGCCCGGAGGCCGGTCGATGCGCTCTTCAAGCAGGG
CCTGGACTTGATTGGCCAGAGCTCGGTGGAGAAGCTGCACTCTTGGGTAA
AACAGAAGATGGATTCTCACTTTACCAGTCCGCGGCCCGTGCGTCAGCGC
CGTTATACAAATCTGTTTGACTAGTAGTCTGTGGAGGAGACAGGAAGAAG
TGGTGCGGGAATTTGTGTCTGCTTGCCGAATGATTGTGGACGTACTTCTC
TTATTGATAGTACCCCTGTCAGAGTACTCTAATAATGTAAATGTGCAGTG
TGACCTGTGTGATATCTGGTTGTGTGTTCGCAAATTCAGATTGGCTGGTG
GGCGAAAGATAACAGCGAGTGAGAGGGTTGTGTGCCTTCGAAAAAAGACT
TGTTTCCAATAATAGATGGTGCACGGGGCAATGGGCAAATTTGGTTGTAA
TTTCCGCCCTCGTTCTCCAACAAGGTAGCAGAGAAGAAAGTGATTTTCTT
GGATGTGGCTTACATATTCCAAATGGGATATTTAAGAGACAAGAAAGAGA
GAGTCGAAGCCTCGTCGCAATGCCGGTAACTGTGTGAGGAAGGGAAAAAA
CGCAGAGGAATTACCTCGTCCTCCGTGCCCCTTATGGGATCTATCAACAG
CAGAGAGATGGCATTGAAACGACTGATGCCCGGAAAGGGAACTCAAAGAA
CAAAACTAGTTTTTATTGACGGTGCAATTTGCT back to topCoding sequence (CDS) from alignment at chr21:420260..423442- >NO21G01400.1 ID=NO21G01400.1|Name=NO21G01400.1|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at chr21:420260..423442- (Nannochloropsis oceanica)
ATGCCGAGCTCCACTACCAAGGCCAAGCGTGAGGTAGCTGCCGCCAAAGT
AGTGCAAGGCAACGCCCGCAGCAAGACCCCTGCCCCAAGGCCTCCAACCA
CGGGCAGCAAAAAGGCCACCACTCCTAAACGTGCCACAACACCCAAACGA
GCTACCACGCCCAAACGAGCCACCACGCCCAAACGAACTGCTGTATCCAA
GAAGGCCACTCCCAAGCGCGGCACGCCCTCCAAGAGGCAAGCTGCCGAGG
CAGAAGAGGTTGTTGCGAGCGACGAGGCATCAGGCACAATCTCCCTCCTC
GTGTCGCCTACCAAGCGCGTCCGCACACCTTCGTCCAAGCATGAAAATAA
GGACAACGATGAGAGCTGTGATGGCAATCTTGACGCTAGGAGACTAGACG
AGGCCAAAGACGAGCTGGAGCTGGGGCGGACTACACGTCTCTTTGCCGAA
GGCATCGGCGACTCGGACGTTGATGGCAACAGCGGCAGCAGCAAGGACCC
GATCGAGGGGGAGGTTGAAGCCTTGCCCGCTCTGTTTGCCACTCCGCAAA
AAACCAAGAACCAGAAAACCTTCGGTACCCCCAGCTCCGTCCAGTGCTCG
CCCTCGGTGAAGAACGCCTACTCCATCGTGCGGCGCTGCACAGGCTCGCT
GGGCGGGAACGGGAGTGGAGGTGCCATCTACGGGGAGCTGACCACGGGCA
GCATGCAGAAAGTGGTAGACGTGATGATCTCACACTGCGGCCTCGGCAAG
GACAGCATCTTCATCGATGTAGGTGCTGGCCTGGGCAAGCCCAACATCCA
CGTGGCCCAATACCCTGGTGTGGCCGCTTCCTACGGCATCGAGCACGAGC
AGGTGCGCTGGCAGCTCTCGCTTCACAATCTTAAGCACCTCCTCCAGGCA
GCTGAGACCGAGGCCGAGGAGATATCCGTCACTGCAGCTGCAGCAGTGGA
AGCGGAGGCGGAAGAAGCAGCAGCAGCCACAGCTGCGGTGGCGGCAGCAA
ACAAGATCAATCACAAGATTTTCTTCCACTACGGCGATGTGACCGAGGCC
CGCACGCTCGATCCCTTTACACATGTGTACATGTTCGACATCGGCTTCCC
GCCTGCGCTTTTCTACGAAATTGCCGACAGGTTCAACGCCTCGCACTGCC
CCTTCCTCATCTGCTATCACGGCCCGAAGCTCATCGCCGAGCGCTACGGC
TTCGACGTCAGCCTTCTCACGCAGATTCAGACCTCTATGCACGGCTCCAG
CGAAGGTCATACCGCCTACTTTTACAAGCGCGCCAAACCCCATCCTGCAC
CGCCTGCCCGGAGGCCGGTCGATGCGCTCTTCAAGCAGGGCCTGGACTTG
ATTGGCCAGAGCTCGGTGGAGAAGCTGCACTCTTGGGTAAAACAGAAGAT
GGATTCTCACTTTACCAGTCCGCGGCCCGTGCGTCAGCGCCGTTATACAA
ATCTGTTTGACTAG back to top
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