NO21G01350.1, NO21G01350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01350.1
Unique NameNO21G01350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1732
Alignment locationchr21:405581..407312 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:405581..407312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01350.1 vs.
Match: EWM22646.1 (aldose 1 [Nannochloropsis gaditana])

HSP 1 Score: 481.1 bits (1237), Expect = 2.600e-132
Identity = 230/304 (75.66%), Postives = 265/304 (87.17%), Query Frame = 0 
Query:    3 SSPAHTVLRDIGLGGLPRVLLKHKAGASAEVYNFGATITSYKPTPEREVLFVSKKAVFDGKKAIRGGVPLVFPQFGQPKKEMAQHGFARSSHWELSDTAVTDDVVRAVFHLSDSEATRALWGFPFLLSYTLSLTAGALTTSLRIENKGDRPFEAQALLHTYLRVGDIKKVSLHGYHPHPFLDKMDMPKEGEVLPVEVREMVEVGEETDRVYETGANEVSVMEGGRERVRVEYTACTVAKDGSDEPFPKPDCVLWNPWVEKSKAMADFGDEEWREMLCVEPGIVKSFNVLPPGHAFVLEQTIRPV 307
            S P HTVLR+ GLGG+PRVLLKHKAGA+AEVYNFGAT+TSYKPTPEREVLFVS KA+FDG+KAIRGGVPLVFPQFGQPKKEMAQHGFAR+SHWELSDTAVT+DVVRAVFHL+D+E TR LW F FLLSYTLSLTA  LTTSLRIENKG+ PFEAQALLHTYLRV DI +V+L G+  HPF+DK+   +  E LP E R  V + +ETDRVY+TGANE++++EGG ERV+VEYTACTV +DGSDE  P PDCVLWNPWV+KS+AMADFGD E++EM+C+EPGIV +F  L PG AF+LEQTIRP+
Sbjct:    2 SCPGHTVLRETGLGGMPRVLLKHKAGATAEVYNFGATLTSYKPTPEREVLFVSHKALFDGQKAIRGGVPLVFPQFGQPKKEMAQHGFARTSHWELSDTAVTEDVVRAVFHLTDTEITRMLWPFSFLLSYTLSLTAQTLTTSLRIENKGEAPFEAQALLHTYLRVRDIGQVALRGFQHHPFVDKV-AAQAVERLPTETRNSVNIAQETDRVYQTGANEITLLEGGAERVKVEYTACTVNRDGSDEALPHPDCVLWNPWVQKSQAMADFGDREFQEMVCLEPGIVSAFYSLAPGQAFLLEQTIRPL 304
The following BLAST results are available for this feature:
BLAST of NO21G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 2.60e-132 / Id = 75.66SequenceEWM22646.1
Match NameE-valueIdentityDescription
EWM22646.12.600e-13275.66aldose 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01350NO21G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01350.1NO21G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01350.1.cds1NO21G01350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01350.1 ID=NO21G01350.1|Name=NO21G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1732bp
CTTCTCTTGCCTCAATGAGTGGGGCGTAGAAATAAATTTTGCGATTCGCA
GTCACTCTTCTCTATAGTCGCACACATGCAATGAATGGCGTTAAAAAGAT
CGGCGTGACCTCTTCATCCGCCTGCTTGTCGAGAGGCTTAGGTATGGATT
GCGCTTTCAATACATCACCTCCCCTAATTTTTCACCATCACACCAAACAG
AGGGTCATACACCCCCACGTTTCACGCATCTCCCCACTTTGCTGACAGCA
TTTTCAGCATAATCGATATTCTAGTAAGAGTGCCACATAAAGGAGCCTTG
AAGGTCCCGGGAGGAGGTCTTGGGCTAGTGCGCAAAGCATGTCTCGTCTC
GCCGCTTATGTGATGCCCTCCTCATAACTTCCACGGGCAGGCTCCAGAAA
TTGTACCACACTCACACTAAGGCATGGACAAGTCAAGTCTCATCAACCGC
TTCGACAAGATCCACTCATACAAACAAATCATACTCGCCCGTTCACAGGC
TGTTGAGAAGAATCAACATAATGGCTTCCTCCCCCGCGCACACCGTCCTG
CGCGATATCGGCCTGGGCGGGCTGCCGCGCGTCCTCCTAAAGCACAAAGC
CGGTGCCAGCGCAGAGGTCTACAATTTCGGGGCCACCATTACGAGTTATA
AGCCCACGCCAGAGCGTGAAGTGCTTTTCGTCTCAAAAAAGGCCGTCTTT
GATGGAAAGAAGGCTATCCGTGGCGGTGTTCCGTTGGTCTTCCCTCAGTT
TGGGCAACCGAAAAAGGAGATGGCGCAGCACGGGTTTGCCCGATCGTCGC
ATTGGGAGTTATCTGATACAGCGGTGACCGACGATGTAGTTAGAGCAGTG
TTTCATTTGTCGGATTCAGAGGCAACCCGTGCTTTGTGGGGGTTCCCTTT
TCTGCTATCTTATACTCTTTCGTTGACTGCCGGAGCACTGACGACGTCCC
TGCGGATTGAGAATAAGGGGGACAGACCTTTTGAGGCCCAGGCGTTGTTG
CACACCTATTTGCGGGTAGGAGATATTAAGAAGGTGTCATTGCATGGGTA
TCACCCGCATCCTTTCTTGGATAAAATGGACATGCCGAAGGAGGGGGAGG
TGCTGCCGGTGGAGGTGAGGGAAATGGTGGAGGTTGGGGAGGAGACAGAC
CGGGTATATGAGACAGGGGCGAATGAGGTGTCGGTCATGGAAGGGGGGCG
GGAACGAGTGAGGGTTGAGTACACAGCTTGTACGGTGGCAAAGGACGGGA
GCGACGAGCCTTTTCCCAAGCCAGATTGTGTGCTGTGGAATCCATGGGTG
GAAAAAAGCAAGGCGATGGCGGACTTTGGAGACGAGGAGTGGAGAGAGAT
GCTGTGTGTGGAGCCAGGAATTGTGAAGAGCTTTAATGTGCTTCCGCCTG
GGCATGCTTTTGTGTTGGAGCAGACGATAAGACCGGTGTGATTGGAGGGG
GAGGGAGAAGGAGGCAGGGAAAGAAGGCACATACCGGCTGAATTGTAGTT
TAGAAAGGTTAAGGATAGACGGTGTAGAGGAAGGAAAAGGGGAATAACAG
AATGGGGAATGTGAGGAGGGGAAAGCAAGTGTTCAAATTAGAGTAATATA
ATGGGGAAGGTGTGGAGAGAAAGACGCAAGAGTTCAAATTGCAAAAGCAG
AGAAAATGCACAACCAAACGAGTGTCGGAAGACAGAAAAAGAGAGAACAA
AACGAAAAAGCAAACAGGGCATGTCGAAACAT
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protein sequence of NO21G01350.1

>NO21G01350.1-protein ID=NO21G01350.1-protein|Name=NO21G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MASSPAHTVLRDIGLGGLPRVLLKHKAGASAEVYNFGATITSYKPTPERE
VLFVSKKAVFDGKKAIRGGVPLVFPQFGQPKKEMAQHGFARSSHWELSDT
AVTDDVVRAVFHLSDSEATRALWGFPFLLSYTLSLTAGALTTSLRIENKG
DRPFEAQALLHTYLRVGDIKKVSLHGYHPHPFLDKMDMPKEGEVLPVEVR
EMVEVGEETDRVYETGANEVSVMEGGRERVRVEYTACTVAKDGSDEPFPK
PDCVLWNPWVEKSKAMADFGDEEWREMLCVEPGIVKSFNVLPPGHAFVLE
QTIRPV*
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mRNA from alignment at chr21:405581..407312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01350.1 ID=NO21G01350.1|Name=NO21G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1732bp|location=Sequence derived from alignment at chr21:405581..407312- (Nannochloropsis oceanica)
CTTCTCTTGCCTCAATGAGTGGGGCGTAGAAATAAATTTTGCGATTCGCA
GTCACTCTTCTCTATAGTCGCACACATGCAATGAATGGCGTTAAAAAGAT
CGGCGTGACCTCTTCATCCGCCTGCTTGTCGAGAGGCTTAGGTATGGATT
GCGCTTTCAATACATCACCTCCCCTAATTTTTCACCATCACACCAAACAG
AGGGTCATACACCCCCACGTTTCACGCATCTCCCCACTTTGCTGACAGCA
TTTTCAGCATAATCGATATTCTAGTAAGAGTGCCACATAAAGGAGCCTTG
AAGGTCCCGGGAGGAGGTCTTGGGCTAGTGCGCAAAGCATGTCTCGTCTC
GCCGCTTATGTGATGCCCTCCTCATAACTTCCACGGGCAGGCTCCAGAAA
TTGTACCACACTCACACTAAGGCATGGACAAGTCAAGTCTCATCAACCGC
TTCGACAAGATCCACTCATACAAACAAATCATACTCGCCCGTTCACAGGC
TGTTGAGAAGAATCAACATAATGGCTTCCTCCCCCGCGCACACCGTCCTG
CGCGATATCGGCCTGGGCGGGCTGCCGCGCGTCCTCCTAAAGCACAAAGC
CGGTGCCAGCGCAGAGGTCTACAATTTCGGGGCCACCATTACGAGTTATA
AGCCCACGCCAGAGCGTGAAGTGCTTTTCGTCTCAAAAAAGGCCGTCTTT
GATGGAAAGAAGGCTATCCGTGGCGGTGTTCCGTTGGTCTTCCCTCAGTT
TGGGCAACCGAAAAAGGAGATGGCGCAGCACGGGTTTGCCCGATCGTCGC
ATTGGGAGTTATCTGATACAGCGGTGACCGACGATGTAGTTAGAGCAGTG
TTTCATTTGTCGGATTCAGAGGCAACCCGTGCTTTGTGGGGGTTCCCTTT
TCTGCTATCTTATACTCTTTCGTTGACTGCCGGAGCACTGACGACGTCCC
TGCGGATTGAGAATAAGGGGGACAGACCTTTTGAGGCCCAGGCGTTGTTG
CACACCTATTTGCGGGTAGGAGATATTAAGAAGGTGTCATTGCATGGGTA
TCACCCGCATCCTTTCTTGGATAAAATGGACATGCCGAAGGAGGGGGAGG
TGCTGCCGGTGGAGGTGAGGGAAATGGTGGAGGTTGGGGAGGAGACAGAC
CGGGTATATGAGACAGGGGCGAATGAGGTGTCGGTCATGGAAGGGGGGCG
GGAACGAGTGAGGGTTGAGTACACAGCTTGTACGGTGGCAAAGGACGGGA
GCGACGAGCCTTTTCCCAAGCCAGATTGTGTGCTGTGGAATCCATGGGTG
GAAAAAAGCAAGGCGATGGCGGACTTTGGAGACGAGGAGTGGAGAGAGAT
GCTGTGTGTGGAGCCAGGAATTGTGAAGAGCTTTAATGTGCTTCCGCCTG
GGCATGCTTTTGTGTTGGAGCAGACGATAAGACCGGTGTGATTGGAGGGG
GAGGGAGAAGGAGGCAGGGAAAGAAGGCACATACCGGCTGAATTGTAGTT
TAGAAAGGTTAAGGATAGACGGTGTAGAGGAAGGAAAAGGGGAATAACAG
AATGGGGAATGTGAGGAGGGGAAAGCAAGTGTTCAAATTAGAGTAATATA
ATGGGGAAGGTGTGGAGAGAAAGACGCAAGAGTTCAAATTGCAAAAGCAG
AGAAAATGCACAACCAAACGAGTGTCGGAAGACAGAAAAAGAGAGAACAA
AACGAAAAAGCAAACAGGGCATGTCGAAACAT
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Coding sequence (CDS) from alignment at chr21:405581..407312-

>NO21G01350.1 ID=NO21G01350.1|Name=NO21G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr21:405581..407312- (Nannochloropsis oceanica)
ATGGCTTCCTCCCCCGCGCACACCGTCCTGCGCGATATCGGCCTGGGCGG
GCTGCCGCGCGTCCTCCTAAAGCACAAAGCCGGTGCCAGCGCAGAGGTCT
ACAATTTCGGGGCCACCATTACGAGTTATAAGCCCACGCCAGAGCGTGAA
GTGCTTTTCGTCTCAAAAAAGGCCGTCTTTGATGGAAAGAAGGCTATCCG
TGGCGGTGTTCCGTTGGTCTTCCCTCAGTTTGGGCAACCGAAAAAGGAGA
TGGCGCAGCACGGGTTTGCCCGATCGTCGCATTGGGAGTTATCTGATACA
GCGGTGACCGACGATGTAGTTAGAGCAGTGTTTCATTTGTCGGATTCAGA
GGCAACCCGTGCTTTGTGGGGGTTCCCTTTTCTGCTATCTTATACTCTTT
CGTTGACTGCCGGAGCACTGACGACGTCCCTGCGGATTGAGAATAAGGGG
GACAGACCTTTTGAGGCCCAGGCGTTGTTGCACACCTATTTGCGGGTAGG
AGATATTAAGAAGGTGTCATTGCATGGGTATCACCCGCATCCTTTCTTGG
ATAAAATGGACATGCCGAAGGAGGGGGAGGTGCTGCCGGTGGAGGTGAGG
GAAATGGTGGAGGTTGGGGAGGAGACAGACCGGGTATATGAGACAGGGGC
GAATGAGGTGTCGGTCATGGAAGGGGGGCGGGAACGAGTGAGGGTTGAGT
ACACAGCTTGTACGGTGGCAAAGGACGGGAGCGACGAGCCTTTTCCCAAG
CCAGATTGTGTGCTGTGGAATCCATGGGTGGAAAAAAGCAAGGCGATGGC
GGACTTTGGAGACGAGGAGTGGAGAGAGATGCTGTGTGTGGAGCCAGGAA
TTGTGAAGAGCTTTAATGTGCTTCCGCCTGGGCATGCTTTTGTGTTGGAG
CAGACGATAAGACCGGTGTGA
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Synonyms
Publications