Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:392557..394782 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01300.1 vs.
Match: EWM22650.1 (conserved oligomeric golgi complex subunit 6 [Nannochloropsis gaditana])
HSP 1 Score: 815.5 bits (2105), Expect = 1.400e-232
Identity = 451/720 (62.64%), Postives = 535/720 (74.31%), Query Frame = 0
Query: 3 RVLEQKVRKVVEGRTDTPAMLEALQAIAAFYGHREGGNTAEARKSLRQDLEKQNMVLCDRFLELFEVLQKRLAVLDAHTANLEGHCQGIHARIETAEESMSAFLARAHALKKQQADAEAKAAQITSFLDRFTLSDAEVAALRFEAVDKIIEGGQRPFFAAMTRVQEIRAGCGALVGSPQQSAGFEMLEALSEHQEAAFRRLHSWILQRCAGLERDDAAGDVEENDVALGLGLRTMRERSALFVHCQECLLQRRKDVVRRRFLQALSGAGLGG-SGESGGRREGRSLSGSGGQRPIEMQAHDPVRYLSDILAWLHQTVASEKEFLQNLL-----GAGAGEG-----GDKEKDEISASLSSSSGKQEMTQLEMLAGIMEGVAPLLKARIMHLVEPR---SFTN-SSVSSSNQLILSFRLLNLLAFYDVTLQTLGLGGSSKTTTIDSSSGTTPSSSAFGQVLRDTRAQAHHFFEAGLRQLGEAAMASPPAYPIDLSAADLTKDAGRQLTEILWVHESSLIPTEELGYEVDDVLTALVEPVLRACRLGAEGLDPSDAAVYMLNNAGMLYTCLVGSNSSSSSSGGCVGKWVERLKAEMETWLALLVKYQSEAVLERTGLGPLLERAVAVAASSSGTLSATAGLDAGTVGEVMKGFYQGLFSSPQFEKLDDPRMRARARQRTSKVIAEGHETAYKLFSKGENGYPEAGKFLIHTPEQVRILLDCEE 708
RVL+QKVRK+VE RTDTPAMLEALQAIAAFYG REGGNTAEARKSLRQDLEKQNMVLCD FL LFEVL++RLA LDAHTA LE HC GIHARIETAEESMSAFLA+ L+KQQ + E+KA Q+ FLD FTLSDAE+AALR+EAV+K++ G RPFFAA+ R QEIR CGALVGS +Q+ GFEMLE LSEHQE AFRRLHS+ILQRCAGLERDD +VEENDVALGLGLRT+R+R ALFVHCQEC+LQRRKDVVRRRFLQALSG G G+ + RS+SGS GQRPI+M +HDPVRYLSDILAWLHQ VASE+EFL NL G G+G G+ + S + QE++Q ML GIMEGV LLKARI+ L+EP TN S ++ +Q+ L FRLL+LLAFYDVT Q LGL T +SA G+ +R+TR + FE L G ++ S PA PIDLS A + + G+ L EI+ VHE+SL+P LGY +D+VLTAL+EP LRACR GAEGL PSD A+YM+NNA +L L S S V WVE+L+ EMETWL L+V+Y+SE VLERTGLGPLL+RA AV+ASSSGTLSATAGLD+ +V M+ FY+GLF+ PQFE+L P +RARARQ+TS +IA+ HE A+ LF + E+GYP+ FL HTPEQV+ILLDC++
Sbjct: 19 RVLKQKVRKMVECRTDTPAMLEALQAIAAFYGQREGGNTAEARKSLRQDLEKQNMVLCDDFLRLFEVLKERLAALDAHTARLEDHCHGIHARIETAEESMSAFLAKTRVLQKQQVECESKAVQLQDFLDNFTLSDAEIAALRYEAVEKVLPDGHRPFFAALARAQEIRGECGALVGSSRQNLGFEMLEELSEHQETAFRRLHSYILQRCAGLERDDPQEEVEENDVALGLGLRTIRDRPALFVHCQECVLQRRKDVVRRRFLQALSGRDEGAEDGDVREEKGKRSMSGS-GQRPIDMHSHDPVRYLSDILAWLHQAVASEREFLTNLFRPEAPGGSGGQGERPLPGEGVPTDGQESGTLEDHNQELSQAAMLGGIMEGVVALLKARILQLLEPADSYGVTNRESNATRSQIFLLFRLLHLLAFYDVTFQKLGL---------------TADASALGKSMRETRVECQRRFEGRLEAWGSQSLMSVPACPIDLSPAQVMGELGQSLAEIVAVHEASLVPPGALGYALDEVLTALIEPALRACRSGAEGLGPSDVALYMINNAAILSASL---TSGSDPPSPAVTAWVEKLREEMETWLGLVVRYESETVLERTGLGPLLDRAQAVSASSSGTLSATAGLDSESVTRTMEAFYRGLFTLPQFERLQQPALRARARQQTSAIIAQRHEKAHALFRRAESGYPDHETFLAHTPEQVKILLDCDD 719
The following BLAST results are available for this feature:
BLAST of NO21G01300.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 Expect = 1.40e-232 / Id = 62.64 Sequence EWM22650.1
Match Name E-value Identity Description
EWM22650.1 1.400e-232 62.64 conserved oligomeric golgi complex subunit 6 [Nann... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01300.1 ID=NO21G01300.1|Name=NO21G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp back to top protein sequence of NO21G01300.1
>NO21G01300.1-protein ID=NO21G01300.1-protein|Name=NO21G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=742bp back to top mRNA from alignment at chr21:392557..394782+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01300.1 ID=NO21G01300.1|Name=NO21G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp|location=Sequence derived from alignment at chr21:392557..394782+ (Nannochloropsis oceanica)ATGGAGCGCGTTCTGGAGCAGAAGGTACGCAAGGTCGTGGAGGGTCGCAC
CGACACGCCCGCCATGCTGGAAGCACTGCAAGCCATCGCCGCTTTTTATG
GGCACCGGGAGGGGGGCAACACGGCCGAGGCCCGCAAGTCCCTGCGGCAA
GATCTGGAGAAGCAAAACATGGTCCTGTGCGACCGCTTCTTGGAGTTGTT
CGAAGTGCTGCAAAAGCGGCTGGCGGTGTTGGACGCCCACACGGCCAACT
TAGAGGGTCATTGCCAGGGGATTCATGCCCGGATTGAGACGGCAGAAGAG
AGCATGAGTGCATTTCTCGCTCGGGCCCACGCCTTGAAAAAGCAACAAGC
AGACGCCGAGGCCAAAGCGGCGCAAATTACTTCTTTTCTGGACAGGTTTA
CCTTGTCGGACGCGGAAGTGGCCGCATTACGATTTGAGGCAGTGGATAAA
ATTATTGAGGGGGGACAGCGCCCCTTCTTTGCCGCCATGACACGCGTGCA
GGAAATCAGGGCAGGCTGTGGTGCCCTCGTAGGGTCACCACAGCAAAGCG
CAGGATTTGAGATGTTAGAAGCCTTGTCTGAGCATCAAGAGGCAGCTTTT
CGACGATTGCATTCGTGGATCCTGCAGCGGTGCGCGGGGTTGGAACGAGA
TGATGCTGCCGGAGATGTAGAGGAGAACGACGTGGCGTTGGGGTTGGGAT
TGAGGACGATGAGGGAACGCTCGGCGCTATTTGTTCATTGTCAAGAGTGC
TTATTGCAACGGAGAAAGGACGTGGTCCGACGGAGGTTTTTGCAGGCCCT
CTCAGGTGCTGGATTGGGTGGTAGTGGAGAAAGTGGGGGAAGGAGGGAGG
GGAGAAGCCTGAGTGGGAGTGGCGGACAGAGGCCAATTGAAATGCAGGCT
CATGACCCAGTGAGATATTTGAGTGATATCTTGGCGTGGCTTCATCAGAC
GGTTGCGTCGGAGAAGGAGTTTCTGCAGAACTTGCTCGGGGCGGGGGCAG
GGGAGGGAGGGGACAAGGAGAAAGATGAGATAAGCGCGTCGTTGTCATCG
TCGTCGGGGAAGCAAGAAATGACGCAGCTAGAGATGTTGGCAGGAATCAT
GGAAGGCGTCGCACCGTTACTCAAGGCCCGCATCATGCATCTAGTGGAGC
CCAGAAGCTTCACCAACAGCAGTGTTAGCAGCAGCAACCAGCTTATCCTT
AGCTTCCGCCTACTGAATCTCCTGGCATTCTACGACGTGACCCTCCAGAC
TCTTGGCCTTGGCGGTAGCAGTAAGACTACTACCATTGACAGCAGCAGCG
GTACCACTCCCTCCTCCTCTGCGTTCGGGCAAGTCCTCAGGGACACACGT
GCCCAGGCTCATCACTTCTTCGAAGCCGGGCTGCGTCAACTGGGAGAGGC
CGCCATGGCCTCCCCCCCTGCCTATCCCATCGATTTGTCTGCTGCGGATC
TGACGAAGGATGCAGGGAGGCAGCTCACGGAAATTCTGTGGGTGCACGAG
TCGTCCTTGATCCCGACGGAGGAGTTGGGGTATGAGGTAGACGATGTGTT
GACAGCCCTGGTCGAGCCCGTGTTACGTGCGTGTAGGTTGGGTGCAGAGG
GGCTGGACCCATCGGATGCTGCTGTGTACATGTTGAACAATGCGGGGATG
TTGTATACGTGTTTGGTCGGGAGTAATAGTAGCAGCAGCAGCAGTGGTGG
TTGTGTAGGGAAGTGGGTGGAGCGATTGAAGGCGGAGATGGAGACCTGGT
TGGCCTTGTTGGTGAAGTATCAATCCGAGGCCGTGCTAGAAAGGACGGGA
CTTGGGCCACTGTTGGAGAGAGCAGTGGCAGTGGCTGCGTCTTCGTCGGG
GACCCTGTCGGCCACGGCGGGATTGGACGCAGGAACTGTAGGGGAGGTCA
TGAAGGGCTTCTATCAGGGTTTGTTCTCCTCGCCTCAATTCGAGAAATTG
GATGATCCGCGGATGAGGGCAAGAGCGAGGCAAAGGACGTCAAAGGTGAT
TGCGGAGGGGCACGAGACGGCGTACAAATTGTTCAGCAAGGGGGAAAATG
GATACCCGGAAGCGGGGAAGTTTTTGATTCACACGCCCGAGCAGGTTCGG
ATTCTATTGGACTGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTATAGA
AAGGAGGAGTGAGGAGGAGGAGGAGGAAAGGGGGCTCACAATGAGGGTGA
ATGATGAATTTAAGCTTTGGAGGTAG back to top Coding sequence (CDS) from alignment at chr21:392557..394782+
>NO21G01300.1 ID=NO21G01300.1|Name=NO21G01300.1|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at chr21:392557..394782+ (Nannochloropsis oceanica) back to top