NO21G01290.1, NO21G01290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01290.1
Unique NameNO21G01290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1329
Alignment locationchr21:390742..392070 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:390742..392070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01290.1 vs.
Match: EWM22653.1 (histone deacetylase superfamily [Nannochloropsis gaditana])

HSP 1 Score: 557.4 bits (1435), Expect = 3.500e-155
Identity = 279/382 (73.04%), Postives = 310/382 (81.15%), Query Frame = 0 
Query:    1 MRTWTLMMVTVLSLVGLGVRGFKTLLNDKRALPPTRQRFAASATPSGAGAVVRGPIQFFYNDIFQVDMPEGHRFPMEKYAAFRRQAQQRLYSLPSVSFHPSPLASLADLETTHDPTYIQRYLTGHITAQEKRESGFDWNEQHVNRTLSSVGGSVAATHAVLRQDNARGLAPQVGAHLAGGTHHAFKAKMEGFCIFSDIAVAANVALRDYPNQVRKILIVDLDVHQGNGNAVLFQDDDRVYTFSMHCKGNYFSDKEQSDHDVEVEANTGDAGYLALLEQHLPLAFEQSKPDLVFFQAGIDPHISDRLGKLSLTRAGLQRRNLRVFQFAEAYRSKCVVVAGGGYPSDSDPSSGPYGDVIAAHADVYVGAAEFFGGGSKMVPLLR 383
            MR    MM+  L  +G GVR  +  L   R          ++    G    V+ P+ FFYNDIF V MPEGHRFPMEKYAAFRRQAQQRL+SLP V FHPSPL+++ DLETTHD +YIQRYL G++TAQEKRESGFDWNEQHVNRTLSSVGG+VAATHAVL+ D        VGAHLAGGTHHAF+A+MEGFCIFSDIAVAANVALRDYP++VRKILIVDLD HQGNGNAVLFQDD RV+TFSMHC  NYFS+K+ SD DVEV+  TGDAGYL+LLE++LPL FE   PDLVFFQAG+D H SDRLGKL+LTRAGLQRRNLR+FQF EAY SK VV AGGGYPSDSDPSSGPY D+I AHADVYVGAAEFFGGGSKMVPLLR
Sbjct:   76 MRKEAAMMIACLVFIGAGVRSLRPALKVTRRFSSVV--VTSNTAQGGDQRGVKDPLYFFYNDIFHVKMPEGHRFPMEKYAAFRRQAQQRLFSLPGVGFHPSPLSTVRDLETTHDRSYIQRYLVGNVTAQEKRESGFDWNEQHVNRTLSSVGGTVAATHAVLQSD------LPVGAHLAGGTHHAFQARMEGFCIFSDIAVAANVALRDYPDKVRKILIVDLDTHQGNGNAVLFQDDSRVFTFSMHCDANYFSEKQASDLDVEVKPGTGDAGYLSLLERYLPLVFEAQAPDLVFFQAGVDIHASDRLGKLALTRAGLQRRNLRLFQFVEAYGSKLVVTAGGGYPSDSDPSSGPYADIINAHADVYVGAAEFFGGGSKMVPLLR 449
The following BLAST results are available for this feature:
BLAST of NO21G01290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
1002003004005006007008009001000110012001300Expect = 3.50e-155 / Id = 73.04SequenceEWM22653.1
Match NameE-valueIdentityDescription
EWM22653.13.500e-15573.04histone deacetylase superfamily [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01290NO21G01290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01290.1NO21G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01290.1.cds1NO21G01290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01290.1 ID=NO21G01290.1|Name=NO21G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp
ACCACAGGCAGCTCGGGAGAGGACCCCATGCGCACCTGGACTTTGATGAT
GGTCACCGTCTTGTCCTTGGTTGGGCTTGGGGTCCGTGGGTTTAAAACAT
TGCTCAACGACAAACGCGCCCTCCCACCAACACGACAACGCTTCGCCGCC
TCAGCAACACCATCAGGCGCGGGCGCGGTGGTCAGAGGCCCTATCCAATT
CTTTTACAATGATATTTTCCAAGTGGATATGCCCGAAGGGCACAGATTTC
CGATGGAAAAATATGCAGCTTTTAGACGGCAAGCCCAACAACGTCTCTAC
TCCTTGCCCAGCGTCAGCTTCCACCCTTCGCCCCTGGCCAGCCTGGCGGA
CCTAGAAACCACCCACGACCCCACTTACATTCAACGGTATCTTACGGGGC
ACATCACAGCACAAGAAAAACGCGAGTCGGGATTCGATTGGAACGAGCAG
CATGTAAACCGAACCCTGTCTTCGGTGGGTGGATCAGTCGCAGCAACTCA
TGCAGTACTTCGACAAGATAACGCTCGCGGGCTGGCGCCGCAAGTAGGTG
CGCATTTAGCAGGGGGCACCCACCATGCGTTCAAAGCCAAGATGGAGGGG
TTCTGTATTTTTAGTGACATTGCAGTCGCGGCTAATGTGGCTCTGAGGGA
CTACCCCAACCAAGTCCGCAAAATTTTGATTGTTGACTTGGATGTCCACC
AAGGGAATGGCAACGCCGTCCTCTTTCAAGATGACGATCGTGTCTATACC
TTTTCTATGCATTGTAAAGGGAACTATTTCTCTGACAAAGAACAGTCCGA
CCACGACGTAGAAGTCGAGGCGAACACAGGCGATGCTGGCTACCTCGCCC
TCCTTGAACAACACCTTCCTCTCGCCTTCGAGCAGTCAAAGCCGGATCTC
GTCTTCTTTCAAGCTGGGATCGATCCCCACATAAGTGACCGGCTCGGGAA
ACTCTCTTTGACACGCGCTGGGTTGCAAAGACGAAATCTACGCGTTTTTC
AGTTTGCCGAAGCTTACCGAAGCAAGTGCGTGGTGGTAGCCGGAGGTGGT
TACCCGTCGGATAGCGACCCTTCGTCGGGTCCATATGGGGATGTAATTGC
AGCACACGCTGACGTGTATGTAGGAGCAGCGGAGTTTTTTGGTGGGGGAA
GTAAGATGGTGCCCCTGTTGAGGTAGTGTATGAAAGGAAAGAGGACGGGA
GAGAGCCAGGGAAAGAGTGGAGGGAAGGAGGTTTAGAGGATACAGGAAGA
AGTCGAAGACAATCAAAGTTTAAACCTTAGGTGATTAAGTCGAAGTACAC
ACAAATAAAAATAAATCACGTCCATCGTC
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protein sequence of NO21G01290.1

>NO21G01290.1-protein ID=NO21G01290.1-protein|Name=NO21G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MRTWTLMMVTVLSLVGLGVRGFKTLLNDKRALPPTRQRFAASATPSGAGA
VVRGPIQFFYNDIFQVDMPEGHRFPMEKYAAFRRQAQQRLYSLPSVSFHP
SPLASLADLETTHDPTYIQRYLTGHITAQEKRESGFDWNEQHVNRTLSSV
GGSVAATHAVLRQDNARGLAPQVGAHLAGGTHHAFKAKMEGFCIFSDIAV
AANVALRDYPNQVRKILIVDLDVHQGNGNAVLFQDDDRVYTFSMHCKGNY
FSDKEQSDHDVEVEANTGDAGYLALLEQHLPLAFEQSKPDLVFFQAGIDP
HISDRLGKLSLTRAGLQRRNLRVFQFAEAYRSKCVVVAGGGYPSDSDPSS
GPYGDVIAAHADVYVGAAEFFGGGSKMVPLLR*
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mRNA from alignment at chr21:390742..392070+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01290.1 ID=NO21G01290.1|Name=NO21G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp|location=Sequence derived from alignment at chr21:390742..392070+ (Nannochloropsis oceanica)
ACCACAGGCAGCTCGGGAGAGGACCCCATGCGCACCTGGACTTTGATGAT
GGTCACCGTCTTGTCCTTGGTTGGGCTTGGGGTCCGTGGGTTTAAAACAT
TGCTCAACGACAAACGCGCCCTCCCACCAACACGACAACGCTTCGCCGCC
TCAGCAACACCATCAGGCGCGGGCGCGGTGGTCAGAGGCCCTATCCAATT
CTTTTACAATGATATTTTCCAAGTGGATATGCCCGAAGGGCACAGATTTC
CGATGGAAAAATATGCAGCTTTTAGACGGCAAGCCCAACAACGTCTCTAC
TCCTTGCCCAGCGTCAGCTTCCACCCTTCGCCCCTGGCCAGCCTGGCGGA
CCTAGAAACCACCCACGACCCCACTTACATTCAACGGTATCTTACGGGGC
ACATCACAGCACAAGAAAAACGCGAGTCGGGATTCGATTGGAACGAGCAG
CATGTAAACCGAACCCTGTCTTCGGTGGGTGGATCAGTCGCAGCAACTCA
TGCAGTACTTCGACAAGATAACGCTCGCGGGCTGGCGCCGCAAGTAGGTG
CGCATTTAGCAGGGGGCACCCACCATGCGTTCAAAGCCAAGATGGAGGGG
TTCTGTATTTTTAGTGACATTGCAGTCGCGGCTAATGTGGCTCTGAGGGA
CTACCCCAACCAAGTCCGCAAAATTTTGATTGTTGACTTGGATGTCCACC
AAGGGAATGGCAACGCCGTCCTCTTTCAAGATGACGATCGTGTCTATACC
TTTTCTATGCATTGTAAAGGGAACTATTTCTCTGACAAAGAACAGTCCGA
CCACGACGTAGAAGTCGAGGCGAACACAGGCGATGCTGGCTACCTCGCCC
TCCTTGAACAACACCTTCCTCTCGCCTTCGAGCAGTCAAAGCCGGATCTC
GTCTTCTTTCAAGCTGGGATCGATCCCCACATAAGTGACCGGCTCGGGAA
ACTCTCTTTGACACGCGCTGGGTTGCAAAGACGAAATCTACGCGTTTTTC
AGTTTGCCGAAGCTTACCGAAGCAAGTGCGTGGTGGTAGCCGGAGGTGGT
TACCCGTCGGATAGCGACCCTTCGTCGGGTCCATATGGGGATGTAATTGC
AGCACACGCTGACGTGTATGTAGGAGCAGCGGAGTTTTTTGGTGGGGGAA
GTAAGATGGTGCCCCTGTTGAGGTAGTGTATGAAAGGAAAGAGGACGGGA
GAGAGCCAGGGAAAGAGTGGAGGGAAGGAGGTTTAGAGGATACAGGAAGA
AGTCGAAGACAATCAAAGTTTAAACCTTAGGTGATTAAGTCGAAGTACAC
ACAAATAAAAATAAATCACGTCCATCGTC
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Coding sequence (CDS) from alignment at chr21:390742..392070+

>NO21G01290.1 ID=NO21G01290.1|Name=NO21G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr21:390742..392070+ (Nannochloropsis oceanica)
ATGCGCACCTGGACTTTGATGATGGTCACCGTCTTGTCCTTGGTTGGGCT
TGGGGTCCGTGGGTTTAAAACATTGCTCAACGACAAACGCGCCCTCCCAC
CAACACGACAACGCTTCGCCGCCTCAGCAACACCATCAGGCGCGGGCGCG
GTGGTCAGAGGCCCTATCCAATTCTTTTACAATGATATTTTCCAAGTGGA
TATGCCCGAAGGGCACAGATTTCCGATGGAAAAATATGCAGCTTTTAGAC
GGCAAGCCCAACAACGTCTCTACTCCTTGCCCAGCGTCAGCTTCCACCCT
TCGCCCCTGGCCAGCCTGGCGGACCTAGAAACCACCCACGACCCCACTTA
CATTCAACGGTATCTTACGGGGCACATCACAGCACAAGAAAAACGCGAGT
CGGGATTCGATTGGAACGAGCAGCATGTAAACCGAACCCTGTCTTCGGTG
GGTGGATCAGTCGCAGCAACTCATGCAGTACTTCGACAAGATAACGCTCG
CGGGCTGGCGCCGCAAGTAGGTGCGCATTTAGCAGGGGGCACCCACCATG
CGTTCAAAGCCAAGATGGAGGGGTTCTGTATTTTTAGTGACATTGCAGTC
GCGGCTAATGTGGCTCTGAGGGACTACCCCAACCAAGTCCGCAAAATTTT
GATTGTTGACTTGGATGTCCACCAAGGGAATGGCAACGCCGTCCTCTTTC
AAGATGACGATCGTGTCTATACCTTTTCTATGCATTGTAAAGGGAACTAT
TTCTCTGACAAAGAACAGTCCGACCACGACGTAGAAGTCGAGGCGAACAC
AGGCGATGCTGGCTACCTCGCCCTCCTTGAACAACACCTTCCTCTCGCCT
TCGAGCAGTCAAAGCCGGATCTCGTCTTCTTTCAAGCTGGGATCGATCCC
CACATAAGTGACCGGCTCGGGAAACTCTCTTTGACACGCGCTGGGTTGCA
AAGACGAAATCTACGCGTTTTTCAGTTTGCCGAAGCTTACCGAAGCAAGT
GCGTGGTGGTAGCCGGAGGTGGTTACCCGTCGGATAGCGACCCTTCGTCG
GGTCCATATGGGGATGTAATTGCAGCACACGCTGACGTGTATGTAGGAGC
AGCGGAGTTTTTTGGTGGGGGAAGTAAGATGGTGCCCCTGTTGAGGTAG
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Synonyms
Publications