NO21G01270.1, NO21G01270.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO21G01270.1
Unique Name	NO21G01270.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2276
Alignment location	chr21:386581..388856 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr21	genome	chr21:386581..388856 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO21G01270.1 vs.

BLAST of NO21G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G01270	NO21G01270	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO21G01270.1	NO21G01270.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO21G01270.1.cds1	NO21G01270.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr21:386581..388856-
coding sequence from alignment at chr21:386581..388856-

mRNA sequence

>NO21G01270.1 ID=NO21G01270.1|Name=NO21G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2276bp
TGATGATTGGAACGGGGGGGATGGGGGCAGGAGGAGGAGGAAGAGGGGGA
GGAGGGGGAAGTGAGAGTAGCCCCTGTTTGCTGATTGCGAAGGAAGGGGG
CATCGAGCCGCTGGTGACATTGATGAGGAGTGGTGGGAGGGAGGGAGGGC
TTGGGCGGGAGCAGGGGCTGAAGGTGAGGGCTGCTACGATTAGATTGGTG
GCTATTCTGAGCCAGCACCCTGCGTGTCGGGTTGCTTTCTTTCAGACGCC
CTATCTGATTGACACCTTGTTCACCGTAGGGATCAATGCCCTGCGAGAAA
CCGAACGAAAGACCGACAACAACGACCAGCAGCAGCCACAACACCAGCGT
CTCCTCTGTGCCCCTTCGTCCCCCTCCTTCTCCACCTCAACCGAAACAGA
CGAACACGCCACTCACCTCGGCTCCCTCTCCTTCCGGGTCGCCACCTTGG
AAGCCGTCCACGTTGCCTTTGCCCTTGCCAACCTGGCTGCCATCGGGGAC
GGGTGCTACGAGCGTCGTCTTGTCGAACTAGGAGCTGCTCCTGTATTGCT
CCAGATGTGCAATTGCCCCATCCCTGAAGTCGTCGCTCAGGCCGTGAGGG
GCCTCGCGCAACTTTGTGGGCCGCTAACTCGGGGCTTTGTGAGGGTGGGA
GGATCGGATTGGGGAGGGAGGGGTAGAGGGAGTGGGGGGGAGAAAGGGCA
GGGGCTTCGGACGGTGGAAGACACGCAAGACGAGCAGTTGAGGTTGTTGT
GGTCCAATGAGATGCTTCAGGTGATGCTGAGCTTGATCCTTGCCAACAGT
AGTAGTAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAA
CAGTAATGGCAGTGATGATGCGGCAAAGCAGCAGCAGCATGTCGAGGCGG
TGCGGGCGATAGCGGCACTGGCGCGGGTAGTGGACTTCTCGTTCTTGATC
GTGCGACCTCAGGGAGGGGTGCTGAAGGAGCTCCTCAAACTTGCAGTGGA
CCCGTCCACCTCCCCAGTGGAAGGAGGAGGAAGGGGGGGAGGAGGGAGTG
AGAGGTTGAGGGGGCAGGAATTGAAGGTACTTGCGGAGGAGGCTTTGGTC
AACTTGGGTTTTGAGGGGGGATCGAGGGCTCTGGAGATATGTGGGAATGA
TCAGGGTTTGCTGCTGGACTGGTGGGTGATGGAAAGGGGCTTGGAGGACC
AGAAGGCAGCGAACGACGAGTTGCCATTTGCAGTGGAAGCCATGATGGCC
CTGGGTGGGGATGAGGGACGAGGGCGGGAGGGAGGAGGGAAGGGGAGGGA
GGGAGGGGGAAGAGCCGGATCGTCGGGGGGAGGATCGGTTGCCATGGTGG
CGGGGCAGCCTTATCAGCAGCAACAGCACCAGCAGTATGGGTATCTTCAG
CAGCAGCAGCAACAGCAGCAGCAGCAAAAGCAGGATGGGGGAGGAGAGGG
AGGAAGGAAGGGTACTGCAATGCTTTCACCGCCCGCGGGATTGGCGAGTA
TCGAGAGGAGGAGGGAGGGAGGAAGGGAGGGTGGGGGAGGATTGGGAGGG
TTTAGCGGACTCATCAAGGAGGTGGCAAATATGAGGCTGAGAGACCTTTT
GTTAATGTGTCTGACTCCGGCAGGGGGAGGAAGGGGGGGAGGGAGGAATG
GTGGCAGTAGTGGTGGTGATGGCGGGCAATCAGAAAGTGCACTCCATGGG
AGTAAGGCTCACCGCGGAGGGGGAGGAACGGAGGGAGGACATGAGGGAAG
GGCAGGAGGACCACCGGGTGAATATGGACAAGAGTGTAAAACCTCCTCTC
TCTCCTGCTCTACCTCTTCTCCCTCTTCTACCTCTTCTACCTACTCCTCC
TCCTCCTCGATCCCTGTTGCTCTCCAACCGCCTCAATTCCGTGGTGCGTC
GACTTTCGGTGGCTTTATCAACAGTGTAGCTAGTGTCACAGGAGGGGGGA
GGGAGGCAGGGAGGGAGGCAGGGCTGGGTTGTAGCAGTGGAGGGAGGAGG
GAGACGTTGCTAAGCTGTTTGCTGAACTCACGGAGGCAGCCGCTGGTGGA
TGATGCCATGGACGAGCAGGAGAGAAGGTGGGCCCATTATCCCTGGCCTT
CGGTATGCTCACCGCTGGCCTTACCCGAGGTGGGGAGTTTGAGCTTTAAC
TTACAGAGATTCATGGACCGAGGCTTCCCTAGCCGGTTGACGCAGTTTGA
AGTGGTACCTCTGACGATGTTGGGGCTCACAAGGGGGGTAGGAAGGAAGG
GTGGGAGGGGGGGTTGGAGTTTGTGA

protein sequence of NO21G01270.1

>NO21G01270.1-protein ID=NO21G01270.1-protein|Name=NO21G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=758bp
MIGTGGMGAGGGGRGGGGGSESSPCLLIAKEGGIEPLVTLMRSGGREGGL
GREQGLKVRAATIRLVAILSQHPACRVAFFQTPYLIDTLFTVGINALRET
ERKTDNNDQQQPQHQRLLCAPSSPSFSTSTETDEHATHLGSLSFRVATLE
AVHVAFALANLAAIGDGCYERRLVELGAAPVLLQMCNCPIPEVVAQAVRG
LAQLCGPLTRGFVRVGGSDWGGRGRGSGGEKGQGLRTVEDTQDEQLRLLW
SNEMLQVMLSLILANSSSSSSSSSSSSSSSSNNSNGSDDAAKQQQHVEAV
RAIAALARVVDFSFLIVRPQGGVLKELLKLAVDPSTSPVEGGGRGGGGSE
RLRGQELKVLAEEALVNLGFEGGSRALEICGNDQGLLLDWWVMERGLEDQ
KAANDELPFAVEAMMALGGDEGRGREGGGKGREGGGRAGSSGGGSVAMVA
GQPYQQQQHQQYGYLQQQQQQQQQQKQDGGGEGGRKGTAMLSPPAGLASI
ERRREGGREGGGGLGGFSGLIKEVANMRLRDLLLMCLTPAGGGRGGGRNG
GSSGGDGGQSESALHGSKAHRGGGGTEGGHEGRAGGPPGEYGQECKTSSL
SCSTSSPSSTSSTYSSSSSIPVALQPPQFRGASTFGGFINSVASVTGGGR
EAGREAGLGCSSGGRRETLLSCLLNSRRQPLVDDAMDEQERRWAHYPWPS
VCSPLALPEVGSLSFNLQRFMDRGFPSRLTQFEVVPLTMLGLTRGVGRKG
GRGGWSL*

mRNA from alignment at chr21:386581..388856-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO21G01270.1 ID=NO21G01270.1|Name=NO21G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2276bp|location=Sequence derived from alignment at chr21:386581..388856- (Nannochloropsis oceanica)
TGATGATTGGAACGGGGGGGATGGGGGCAGGAGGAGGAGGAAGAGGGGGA
GGAGGGGGAAGTGAGAGTAGCCCCTGTTTGCTGATTGCGAAGGAAGGGGG
CATCGAGCCGCTGGTGACATTGATGAGGAGTGGTGGGAGGGAGGGAGGGC
TTGGGCGGGAGCAGGGGCTGAAGGTGAGGGCTGCTACGATTAGATTGGTG
GCTATTCTGAGCCAGCACCCTGCGTGTCGGGTTGCTTTCTTTCAGACGCC
CTATCTGATTGACACCTTGTTCACCGTAGGGATCAATGCCCTGCGAGAAA
CCGAACGAAAGACCGACAACAACGACCAGCAGCAGCCACAACACCAGCGT
CTCCTCTGTGCCCCTTCGTCCCCCTCCTTCTCCACCTCAACCGAAACAGA
CGAACACGCCACTCACCTCGGCTCCCTCTCCTTCCGGGTCGCCACCTTGG
AAGCCGTCCACGTTGCCTTTGCCCTTGCCAACCTGGCTGCCATCGGGGAC
GGGTGCTACGAGCGTCGTCTTGTCGAACTAGGAGCTGCTCCTGTATTGCT
CCAGATGTGCAATTGCCCCATCCCTGAAGTCGTCGCTCAGGCCGTGAGGG
GCCTCGCGCAACTTTGTGGGCCGCTAACTCGGGGCTTTGTGAGGGTGGGA
GGATCGGATTGGGGAGGGAGGGGTAGAGGGAGTGGGGGGGAGAAAGGGCA
GGGGCTTCGGACGGTGGAAGACACGCAAGACGAGCAGTTGAGGTTGTTGT
GGTCCAATGAGATGCTTCAGGTGATGCTGAGCTTGATCCTTGCCAACAGT
AGTAGTAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAA
CAGTAATGGCAGTGATGATGCGGCAAAGCAGCAGCAGCATGTCGAGGCGG
TGCGGGCGATAGCGGCACTGGCGCGGGTAGTGGACTTCTCGTTCTTGATC
GTGCGACCTCAGGGAGGGGTGCTGAAGGAGCTCCTCAAACTTGCAGTGGA
CCCGTCCACCTCCCCAGTGGAAGGAGGAGGAAGGGGGGGAGGAGGGAGTG
AGAGGTTGAGGGGGCAGGAATTGAAGGTACTTGCGGAGGAGGCTTTGGTC
AACTTGGGTTTTGAGGGGGGATCGAGGGCTCTGGAGATATGTGGGAATGA
TCAGGGTTTGCTGCTGGACTGGTGGGTGATGGAAAGGGGCTTGGAGGACC
AGAAGGCAGCGAACGACGAGTTGCCATTTGCAGTGGAAGCCATGATGGCC
CTGGGTGGGGATGAGGGACGAGGGCGGGAGGGAGGAGGGAAGGGGAGGGA
GGGAGGGGGAAGAGCCGGATCGTCGGGGGGAGGATCGGTTGCCATGGTGG
CGGGGCAGCCTTATCAGCAGCAACAGCACCAGCAGTATGGGTATCTTCAG
CAGCAGCAGCAACAGCAGCAGCAGCAAAAGCAGGATGGGGGAGGAGAGGG
AGGAAGGAAGGGTACTGCAATGCTTTCACCGCCCGCGGGATTGGCGAGTA
TCGAGAGGAGGAGGGAGGGAGGAAGGGAGGGTGGGGGAGGATTGGGAGGG
TTTAGCGGACTCATCAAGGAGGTGGCAAATATGAGGCTGAGAGACCTTTT
GTTAATGTGTCTGACTCCGGCAGGGGGAGGAAGGGGGGGAGGGAGGAATG
GTGGCAGTAGTGGTGGTGATGGCGGGCAATCAGAAAGTGCACTCCATGGG
AGTAAGGCTCACCGCGGAGGGGGAGGAACGGAGGGAGGACATGAGGGAAG
GGCAGGAGGACCACCGGGTGAATATGGACAAGAGTGTAAAACCTCCTCTC
TCTCCTGCTCTACCTCTTCTCCCTCTTCTACCTCTTCTACCTACTCCTCC
TCCTCCTCGATCCCTGTTGCTCTCCAACCGCCTCAATTCCGTGGTGCGTC
GACTTTCGGTGGCTTTATCAACAGTGTAGCTAGTGTCACAGGAGGGGGGA
GGGAGGCAGGGAGGGAGGCAGGGCTGGGTTGTAGCAGTGGAGGGAGGAGG
GAGACGTTGCTAAGCTGTTTGCTGAACTCACGGAGGCAGCCGCTGGTGGA
TGATGCCATGGACGAGCAGGAGAGAAGGTGGGCCCATTATCCCTGGCCTT
CGGTATGCTCACCGCTGGCCTTACCCGAGGTGGGGAGTTTGAGCTTTAAC
TTACAGAGATTCATGGACCGAGGCTTCCCTAGCCGGTTGACGCAGTTTGA
AGTGGTACCTCTGACGATGTTGGGGCTCACAAGGGGGGTAGGAAGGAAGG
GTGGGAGGGGGGGTTGGAGTTTGTGA

Coding sequence (CDS) from alignment at chr21:386581..388856-

>NO21G01270.1 ID=NO21G01270.1|Name=NO21G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=2274bp|location=Sequence derived from alignment at chr21:386581..388856- (Nannochloropsis oceanica)
ATGATTGGAACGGGGGGGATGGGGGCAGGAGGAGGAGGAAGAGGGGGAGG
AGGGGGAAGTGAGAGTAGCCCCTGTTTGCTGATTGCGAAGGAAGGGGGCA
TCGAGCCGCTGGTGACATTGATGAGGAGTGGTGGGAGGGAGGGAGGGCTT
GGGCGGGAGCAGGGGCTGAAGGTGAGGGCTGCTACGATTAGATTGGTGGC
TATTCTGAGCCAGCACCCTGCGTGTCGGGTTGCTTTCTTTCAGACGCCCT
ATCTGATTGACACCTTGTTCACCGTAGGGATCAATGCCCTGCGAGAAACC
GAACGAAAGACCGACAACAACGACCAGCAGCAGCCACAACACCAGCGTCT
CCTCTGTGCCCCTTCGTCCCCCTCCTTCTCCACCTCAACCGAAACAGACG
AACACGCCACTCACCTCGGCTCCCTCTCCTTCCGGGTCGCCACCTTGGAA
GCCGTCCACGTTGCCTTTGCCCTTGCCAACCTGGCTGCCATCGGGGACGG
GTGCTACGAGCGTCGTCTTGTCGAACTAGGAGCTGCTCCTGTATTGCTCC
AGATGTGCAATTGCCCCATCCCTGAAGTCGTCGCTCAGGCCGTGAGGGGC
CTCGCGCAACTTTGTGGGCCGCTAACTCGGGGCTTTGTGAGGGTGGGAGG
ATCGGATTGGGGAGGGAGGGGTAGAGGGAGTGGGGGGGAGAAAGGGCAGG
GGCTTCGGACGGTGGAAGACACGCAAGACGAGCAGTTGAGGTTGTTGTGG
TCCAATGAGATGCTTCAGGTGATGCTGAGCTTGATCCTTGCCAACAGTAG
TAGTAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACA
GTAATGGCAGTGATGATGCGGCAAAGCAGCAGCAGCATGTCGAGGCGGTG
CGGGCGATAGCGGCACTGGCGCGGGTAGTGGACTTCTCGTTCTTGATCGT
GCGACCTCAGGGAGGGGTGCTGAAGGAGCTCCTCAAACTTGCAGTGGACC
CGTCCACCTCCCCAGTGGAAGGAGGAGGAAGGGGGGGAGGAGGGAGTGAG
AGGTTGAGGGGGCAGGAATTGAAGGTACTTGCGGAGGAGGCTTTGGTCAA
CTTGGGTTTTGAGGGGGGATCGAGGGCTCTGGAGATATGTGGGAATGATC
AGGGTTTGCTGCTGGACTGGTGGGTGATGGAAAGGGGCTTGGAGGACCAG
AAGGCAGCGAACGACGAGTTGCCATTTGCAGTGGAAGCCATGATGGCCCT
GGGTGGGGATGAGGGACGAGGGCGGGAGGGAGGAGGGAAGGGGAGGGAGG
GAGGGGGAAGAGCCGGATCGTCGGGGGGAGGATCGGTTGCCATGGTGGCG
GGGCAGCCTTATCAGCAGCAACAGCACCAGCAGTATGGGTATCTTCAGCA
GCAGCAGCAACAGCAGCAGCAGCAAAAGCAGGATGGGGGAGGAGAGGGAG
GAAGGAAGGGTACTGCAATGCTTTCACCGCCCGCGGGATTGGCGAGTATC
GAGAGGAGGAGGGAGGGAGGAAGGGAGGGTGGGGGAGGATTGGGAGGGTT
TAGCGGACTCATCAAGGAGGTGGCAAATATGAGGCTGAGAGACCTTTTGT
TAATGTGTCTGACTCCGGCAGGGGGAGGAAGGGGGGGAGGGAGGAATGGT
GGCAGTAGTGGTGGTGATGGCGGGCAATCAGAAAGTGCACTCCATGGGAG
TAAGGCTCACCGCGGAGGGGGAGGAACGGAGGGAGGACATGAGGGAAGGG
CAGGAGGACCACCGGGTGAATATGGACAAGAGTGTAAAACCTCCTCTCTC
TCCTGCTCTACCTCTTCTCCCTCTTCTACCTCTTCTACCTACTCCTCCTC
CTCCTCGATCCCTGTTGCTCTCCAACCGCCTCAATTCCGTGGTGCGTCGA
CTTTCGGTGGCTTTATCAACAGTGTAGCTAGTGTCACAGGAGGGGGGAGG
GAGGCAGGGAGGGAGGCAGGGCTGGGTTGTAGCAGTGGAGGGAGGAGGGA
GACGTTGCTAAGCTGTTTGCTGAACTCACGGAGGCAGCCGCTGGTGGATG
ATGCCATGGACGAGCAGGAGAGAAGGTGGGCCCATTATCCCTGGCCTTCG
GTATGCTCACCGCTGGCCTTACCCGAGGTGGGGAGTTTGAGCTTTAACTT
ACAGAGATTCATGGACCGAGGCTTCCCTAGCCGGTTGACGCAGTTTGAAG
TGGTACCTCTGACGATGTTGGGGCTCACAAGGGGGGTAGGAAGGAAGGGT
GGGAGGGGGGGTTGGAGTTTGTGA

Synonyms

Publications