NO21G01220.1, NO21G01220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01220.1
Unique NameNO21G01220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1656
Alignment locationchr21:370880..373416 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:370880..373416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01220.1 vs.
Match: XP_005854756.1 (pyridoxine kinase, partial [Nannochloropsis gaditana CCMP526]; EKU21601.1 pyridoxine kinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 678.7 bits (1750), Expect = 1.500e-191
Identity = 371/567 (65.43%), Postives = 407/567 (71.78%), Query Frame = 0 
Query:   11 ASPPTQ-ARVLSIQSHVVHGYVGNKSAVFPLQLLGLDVDPVNSVQFSNHTGYSTCNGDVLNGAQLLALIDGLERNNLLSCYTHLLTGYIGSASFLQAVVQIALKLKQKNPDLIYVCDPVLGDEGKIYVPEDLVEMYKTLVLPVADVLTPNQFEAEMLTGIKIQNESDAQRACLLLHAHGPRTVVVTSASLEGGYDALHVVGSQR---------------------------------HGISWRSPDMCRLLVPRIPGDYTGTGDLTAALLLAWLHLTPGDAPSRLEGVLENVIATVQATLKRTRAEAGESAELRLIQSKEDIERPRVEVRAERLVQPVDIRGVIFDMDGTLTRPGQIDFKRIHARLNIPDAEDILSFIEGMRSAAEREAALTVVEEEEMRGFIDVQLQEGAEEVVAWLREERGMQVALATRNNAKCVEKLVELCNFHPSTISSSMHDLSLNPALTPSPFSSSSSLASSGSFHPILTRVFKSAVDVDKLLAVSELWGLAPSSILVVGDSLEDCQWAHMAGMKSCLIHIGASHTLDTLRSGYVHTVIESLGELQAMLGG 544
            +SPP + AR+LSIQSHVVHG                       VQFSNHTGY  C GDVL G +LL L++GLE N LLS YTHLLTGYIGS SFL AVVQ+A KLK  NP L YVCDPVLGDEGK+YV E LVE YKT VLP+ADVLTPNQFEAE+LTGIKIQ+ESDAQRACLLLHAHGPRTVVVTSA+  GG   LHV+GSQR                                 HG SWR+PDMCRL+VPRI G YTGTGDLTAALLLAWL+  P   P  L  VLE  IATVQA LKRT  E G SAELRL+QSK+DIERPRV+V AERL QP DI+GVIFDMDGTLT+PGQIDF RI +RLNIP+  DIL++I  M S  +R AAL VVEEEE+RGF+DVQLQE AEEVVAWLR ERGMQVALATRNN KCV+ LV+ C F                 L     +SS       SFHP+LTR +KS VDVDKLL V E WGL P S+LVVGDSLEDCQWAH+AGMKSCLIHIGA HTLDTLRSGYVHTVIESLGELQ +LGG
Sbjct:   69 SSPPMKPARILSIQSHVVHG-----------------------VQFSNHTGYDVCKGDVLEGVELLRLVEGLEANGLLSGYTHLLTGYIGSPSFLHAVVQVATKLKALNPGLQYVCDPVLGDEGKLYVAEALVETYKTQVLPLADVLTPNQFEAEILTGIKIQSESDAQRACLLLHAHGPRTVVVTSAAFRGGEGCLHVLGSQRAYMPWGVECGDDWCGVWGRKGIVRPYDSETGRCHGTSWRAPDMCRLVVPRIAGAYTGTGDLTAALLLAWLYRDP---PRGLPEVLEKAIATVQAILKRTYEEGGGSAELRLVQSKQDIERPRVQVTAERLRQPTDIKGVIFDMDGTLTKPGQIDFGRIRSRLNIPENVDILTYIGQMSSEGDRVAALAVVEEEELRGFMDVQLQEKAEEVVAWLRGERGMQVALATRNNPKCVDVLVDRCAFR----------------LPCHVEASSVETPPKASFHPVLTRAWKSEVDVDKLLDVCEQWGLPPESVLVVGDSLEDCQWAHLAGMKSCLIHIGADHTLDTLRSGYVHTVIESLGELQTLLGG 593
The following BLAST results are available for this feature:
BLAST of NO21G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 1.50e-191 / Id = 65.43SequenceXP_005854756.1
Match NameE-valueIdentityDescription
XP_005854756.11.500e-19165.43pyridoxine kinase, partial [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01220NO21G01220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01220.1NO21G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01220.1.cds1NO21G01220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01220.1.cds2NO21G01220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01220.1.cds3NO21G01220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01220.1.cds4NO21G01220.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01220.1.cds5NO21G01220.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01220.1.cds6NO21G01220.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01220.1 ID=NO21G01220.1|Name=NO21G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp
ATGCTCACTACCACAAGGAATGACAACCCTGCCAGTCCTCCCACGCAGGC
GCGGGTCCTGTCCATCCAGTCCCACGTTGTACACGGCTATGTTGGTAACA
AAAGCGCCGTCTTCCCCCTCCAGCTCCTCGGCCTGGACGTTGATCCAGTA
AATAGTGTTCAATTCTCCAACCATACCGGCTATAGCACCTGCAACGGTGA
CGTGCTCAACGGAGCTCAGCTTCTCGCCCTCATCGACGGCCTCGAAAGGA
ACAATCTGCTGTCATGTTACACTCATCTTCTGACCGGCTACATCGGATCT
GCTTCCTTCCTCCAAGCTGTCGTTCAAATCGCCCTCAAACTCAAACAAAA
AAATCCGGACTTAATCTACGTATGTGACCCTGTTCTAGGCGACGAGGGGA
AAATATACGTTCCTGAAGACTTGGTTGAGATGTACAAGACATTGGTATTG
CCAGTTGCTGACGTTTTGACGCCAAATCAATTTGAGGCGGAGATGCTGAC
GGGAATCAAGATACAGAATGAGAGCGACGCGCAAAGGGCGTGTTTGTTGT
TGCACGCCCATGGGCCGCGCACGGTGGTGGTGACAAGTGCCTCGCTTGAG
GGGGGGTATGATGCTCTGCATGTGGTTGGAAGTCAACGCCATGGTATCTC
CTGGCGCTCCCCCGACATGTGCCGCCTCCTCGTCCCTCGCATCCCGGGTG
ACTACACAGGCACGGGGGATCTAACGGCTGCATTGCTGTTGGCCTGGCTA
CACTTGACACCGGGGGATGCTCCAAGTCGACTGGAAGGGGTGCTAGAGAA
TGTGATTGCTACTGTGCAGGCGACGCTAAAGAGGACGCGGGCCGAGGCAG
GAGAAAGCGCAGAGCTGAGGCTGATACAGAGCAAGGAGGATATCGAAAGG
CCGCGTGTGGAGGTGCGCGCTGAGCGTCTGGTTCAGCCTGTGGATATTCG
CGGCGTCATTTTCGACATGGACGGCACGCTCACCCGACCAGGTCAGATTG
ATTTCAAGCGCATCCATGCGCGGTTAAACATCCCCGACGCCGAGGATATA
CTTAGCTTCATTGAAGGCATGCGATCAGCGGCCGAGAGGGAAGCTGCCTT
GACCGTGGTGGAGGAAGAGGAAATGCGGGGTTTCATCGATGTCCAGCTGC
AGGAAGGGGCAGAGGAGGTGGTGGCTTGGCTGAGGGAGGAGAGAGGGATG
CAAGTCGCCCTGGCCACAAGAAACAACGCCAAGTGTGTGGAGAAACTTGT
AGAGCTGTGTAATTTCCACCCATCCACAATCTCCTCCTCTATGCATGATC
TTTCCCTCAATCCCGCCCTCACGCCTTCCCCCTTTTCTTCCTCCTCGTCC
TTGGCCTCGTCTGGATCATTTCATCCCATCTTGACCCGGGTGTTCAAGAG
TGCGGTGGACGTGGATAAGCTTTTGGCGGTGAGCGAGCTGTGGGGCTTAG
CTCCGTCCTCAATCCTTGTAGTAGGAGACAGTCTTGAGGACTGTCAATGG
GCACATATGGCAGGCATGAAGTCCTGCCTAATTCATATCGGTGCATCCCA
CACGCTCGATACGCTCCGGAGTGGGTATGTGCATACGGTCATTGAATCTC
TGGGGGAGCTCCAGGCGATGCTTGGCGGGCCACAAAAGCCCGAGGGAGAG
GAGTAA
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protein sequence of NO21G01220.1

>NO21G01220.1-protein ID=NO21G01220.1-protein|Name=NO21G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MLTTTRNDNPASPPTQARVLSIQSHVVHGYVGNKSAVFPLQLLGLDVDPV
NSVQFSNHTGYSTCNGDVLNGAQLLALIDGLERNNLLSCYTHLLTGYIGS
ASFLQAVVQIALKLKQKNPDLIYVCDPVLGDEGKIYVPEDLVEMYKTLVL
PVADVLTPNQFEAEMLTGIKIQNESDAQRACLLLHAHGPRTVVVTSASLE
GGYDALHVVGSQRHGISWRSPDMCRLLVPRIPGDYTGTGDLTAALLLAWL
HLTPGDAPSRLEGVLENVIATVQATLKRTRAEAGESAELRLIQSKEDIER
PRVEVRAERLVQPVDIRGVIFDMDGTLTRPGQIDFKRIHARLNIPDAEDI
LSFIEGMRSAAEREAALTVVEEEEMRGFIDVQLQEGAEEVVAWLREERGM
QVALATRNNAKCVEKLVELCNFHPSTISSSMHDLSLNPALTPSPFSSSSS
LASSGSFHPILTRVFKSAVDVDKLLAVSELWGLAPSSILVVGDSLEDCQW
AHMAGMKSCLIHIGASHTLDTLRSGYVHTVIESLGELQAMLGGPQKPEGE
E*
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mRNA from alignment at chr21:370880..373416+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01220.1 ID=NO21G01220.1|Name=NO21G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2537bp|location=Sequence derived from alignment at chr21:370880..373416+ (Nannochloropsis oceanica)
ATGCTCACTACCACAAGGAATGACAACCCTGCCAGTCCTCCCACGCAGGC
GCGGGTCCTGTCCATCCAGTCCCACGTTGTACACGGGTACGTCCTCTCGT
CATCCACTTCCGCCCGATACTCTACCCTTTCCCCAGCCATCTTACTTCCT
TTCTCGCCACGTGGATGACACCTTTGTTTAGTTCCTTATTTTCTCGGCCA
TTCGCGCTTCTTCGTCTTGTTCCCAAACGATGGCGTCATCTCTCATCCCC
CCCACCCCTTTTTGTCCCACCCATTACGACAAAACCTAGCTATGTTGGTA
ACAAAAGCGCCGTCTTCCCCCTCCAGCTCCTCGGCCTGGACGTTGATCCA
GTAAATAGTGTTCAATTCTCCAACCATACCGGCTATAGCACCTGCAACGG
TGACGTGCTCAACGGAGCTCAGCTTCTCGCCCTCATCGACGGCCTCGAAA
GGAACAATCTGCTGTCATGTTACACTCATCTTCTGACCGGCTACATCGGA
TCTGCTTCCTTCCTCCAAGCTGTCGTTCAAATCGCCCTCAAACTCAAACA
AAAAAATCCGGACTTAATCTACGTATGTGACCCTGTTCTAGGCGACGAGG
GGAAAATATACGTTCCTGAAGACTTGGTTGAGATGTACAAGACATTGGTA
TTGCCAGTTGCTGACGTTTTGACGCCAAATCAATTTGAGGCGGAGATGCT
GACGGGAATCAAGATACAGAATGAGAGCGACGCGCAAAGGGCGTGTTTGT
TGTTGCACGCCCATGGGCCGCGCACGGTGGTGGTGACAAGTGCCTCGCTT
GAGGGGGGGTATGATGCTCTGCATGTGGTTGGAAGTCAACGTGAGTGTCG
GAGAGGGAAGGAAGGAAGGAAGAGAGGGGTGTGTGTGCATGTGCTTGCAG
AGAAGGCGGAAGAGAATCATGTGTCAAGCAACACCATGAAGTGCTTTTGT
GCGGCAAGTGGTGGCGAAGGAAGGATAGAGATGCCGTTGATCTCCATACC
CATAACTTATCTCTGCTGCCTCACCCTCCCCTTCTTCTTCTCTCTTCGTT
TTCAGGCCATGGTATCTCCTGGCGCTCCCCCGACATGTGCCGCCTCCTCG
TCCCTCGCATCCCGGGTGACTACACAGGCACGGGGGATCTAACGGCTGCA
TTGCTGTTGGCCTGGCTACACTTGACACCGGGGGATGCTCCAAGTCGACT
GGAAGGGGTGCTAGAGAATGTGATTGCTACTGTGCAGGCGACGCTAAAGA
GGACGCGGGCCGAGGCAGGAGAAAGCGCAGAGCTGAGGCTGATACAGAGC
AAGGAGGATATCGAAAGGTAAAGAGGGAAGGAAAGAGGGACGGAAGGGGG
GCTTACGAAGTAAAGCACAATCGCCTTGCCAGCATCATTACAAATGAATA
ACCTCATACATGCTGCCTTCATATATATTTAAATGCTACCATCTTCCGCA
ACTAATTCATTGGATTGTCGGGCAGGCCGCGTGTGGAGGTGCGCGCTGAG
CGTCTGGTTCAGCCTGTGGATATTCGCGGCGTCATTTTCGACATGTAAGC
GTCTAGTTTCTTTTGACTTCCACGTGCTTCATCACTCAAACATGCGTGCA
CCTCCCCTCTCTCACTTTGCTTTCTGCCTCAGGGACGGCACGCTCACCCG
ACCAGGTCAGATTGATTTCAAGCGCATCCATGCGCGGTTAAACATCCCCG
ACGCCGAGGATATACTTAGCTTCATTGAAGGCATGCGATCAGCGGCCGAG
AGGGAAGCTGCCTTGACCGTGGTGGAGGAAGAGGAAATGCGGGGTTTCAT
CGATGTCCAGCTGCAGGAAGGGGCAGAGGAGGTGGTGGCTTGGCTGAGGG
AGGAGAGAGGGATGCAAGTCGCCCTGGCCACAAGAAACAACGCCAAGTGT
GTGGAGAAACTTGTAGAGCTGTGTAATTTCCACCCATCCACAATCTCCTC
CTCTATGCATGATCTTTCCCTCAATCCCGCCCTCACGCCTTCCCCCTTTT
CTTCCTCCTCGTCCTTGGCCTCGTCTGGATCATTTCATCCCATCTTGACC
CGGGTGTTCAAGAGTGCGGTGGACGTGGATAAGCTTTTGGCGGTGAGCGA
GCTGTGGGGCTTAGCTCCGTCCTCAATCCTTGTAGTAGGAGACAGTCTTG
GTACGTGTGAGGGAGGAAGGGTGCGAGGGAACGAGGGGGCAAGGGAACAA
GGGGCGAGGGAAAAGGACCGTCAAACTAGGCTTTTCGGGAGACGTCCATT
CATTTGTGTTCTTGAAAGTGCTCCACTTCCCCTCATCGATAATTTGCGGG
CGACCAATACCTCATCCACTTTCTTCCCTTCTTCCCTATTCCTCACTCCC
CTCTCCCGCCAACACAGAGGACTGTCAATGGGCACATATGGCAGGCATGA
AGTCCTGCCTAATTCATATCGGTGCATCCCACACGCTCGATACGCTCCGG
AGTGGGTATGTGCATACGGTCATTGAATCTCTGGGGGAGCTCCAGGCGAT
GCTTGGCGGGCCACAAAAGCCCGAGGGAGAGGAGTAA
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Coding sequence (CDS) from alignment at chr21:370880..373416+

>NO21G01220.1 ID=NO21G01220.1|Name=NO21G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at chr21:370880..373416+ (Nannochloropsis oceanica)
ATGCTCACTACCACAAGGAATGACAACCCTGCCAGTCCTCCCACGCAGGC
GCGGGTCCTGTCCATCCAGTCCCACGTTGTACACGGCTATGTTGGTAACA
AAAGCGCCGTCTTCCCCCTCCAGCTCCTCGGCCTGGACGTTGATCCAGTA
AATAGTGTTCAATTCTCCAACCATACCGGCTATAGCACCTGCAACGGTGA
CGTGCTCAACGGAGCTCAGCTTCTCGCCCTCATCGACGGCCTCGAAAGGA
ACAATCTGCTGTCATGTTACACTCATCTTCTGACCGGCTACATCGGATCT
GCTTCCTTCCTCCAAGCTGTCGTTCAAATCGCCCTCAAACTCAAACAAAA
AAATCCGGACTTAATCTACGTATGTGACCCTGTTCTAGGCGACGAGGGGA
AAATATACGTTCCTGAAGACTTGGTTGAGATGTACAAGACATTGGTATTG
CCAGTTGCTGACGTTTTGACGCCAAATCAATTTGAGGCGGAGATGCTGAC
GGGAATCAAGATACAGAATGAGAGCGACGCGCAAAGGGCGTGTTTGTTGT
TGCACGCCCATGGGCCGCGCACGGTGGTGGTGACAAGTGCCTCGCTTGAG
GGGGGGTATGATGCTCTGCATGTGGTTGGAAGTCAACGCCATGGTATCTC
CTGGCGCTCCCCCGACATGTGCCGCCTCCTCGTCCCTCGCATCCCGGGTG
ACTACACAGGCACGGGGGATCTAACGGCTGCATTGCTGTTGGCCTGGCTA
CACTTGACACCGGGGGATGCTCCAAGTCGACTGGAAGGGGTGCTAGAGAA
TGTGATTGCTACTGTGCAGGCGACGCTAAAGAGGACGCGGGCCGAGGCAG
GAGAAAGCGCAGAGCTGAGGCTGATACAGAGCAAGGAGGATATCGAAAGG
CCGCGTGTGGAGGTGCGCGCTGAGCGTCTGGTTCAGCCTGTGGATATTCG
CGGCGTCATTTTCGACATGGACGGCACGCTCACCCGACCAGGTCAGATTG
ATTTCAAGCGCATCCATGCGCGGTTAAACATCCCCGACGCCGAGGATATA
CTTAGCTTCATTGAAGGCATGCGATCAGCGGCCGAGAGGGAAGCTGCCTT
GACCGTGGTGGAGGAAGAGGAAATGCGGGGTTTCATCGATGTCCAGCTGC
AGGAAGGGGCAGAGGAGGTGGTGGCTTGGCTGAGGGAGGAGAGAGGGATG
CAAGTCGCCCTGGCCACAAGAAACAACGCCAAGTGTGTGGAGAAACTTGT
AGAGCTGTGTAATTTCCACCCATCCACAATCTCCTCCTCTATGCATGATC
TTTCCCTCAATCCCGCCCTCACGCCTTCCCCCTTTTCTTCCTCCTCGTCC
TTGGCCTCGTCTGGATCATTTCATCCCATCTTGACCCGGGTGTTCAAGAG
TGCGGTGGACGTGGATAAGCTTTTGGCGGTGAGCGAGCTGTGGGGCTTAG
CTCCGTCCTCAATCCTTGTAGTAGGAGACAGTCTTGAGGACTGTCAATGG
GCACATATGGCAGGCATGAAGTCCTGCCTAATTCATATCGGTGCATCCCA
CACGCTCGATACGCTCCGGAGTGGGTATGTGCATACGGTCATTGAATCTC
TGGGGGAGCTCCAGGCGATGCTTGGCGGGCCACAAAAGCCCGAGGGAGAG
GAGTAA
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Synonyms
Publications