Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:364013..370528 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01200.1 vs.
Match: EWM22628.1 (anaphase-promoting complex subunit [Nannochloropsis gaditana])
HSP 1 Score: 546.2 bits (1406), Expect = 1.400e-151
Identity = 340/653 (52.07%), Postives = 424/653 (64.93%), Query Frame = 0
Query: 19 STPLLRADHLHLLQQQVHSFIQQGLFDSAELLGGLLLCRTRPAVISSKFTQSPSSSSSSSSSSPEQWEMHAHSLELYADALIGKKEVRRALYCYQQADAHRKLASTAA--ASSTAASSSSHSCSTLSSSLTTIKVKEAHCHLSLNEPSQALRALLSIPPPHRQNFLAVQLTLGKVYVILGLIQDAIIAYKLAISLNPFVLDALVELAGLGAGNEEVWGLIVREGVSTSAAAGREGGRPGSSSCSSSSASSSSSNVRRRNNSSNSTNSSNSHDNNRNRNEQEDLQQLRAASLPWLQLFFSAHLARHTQHYPEAANAFSELETTFFPSSTHCLLQKARVQIEMDLLTDAHATFGRVV-GEGGVEGGREKGVMEHMDYYAVLLRQKGAGGTLAGLAHRLMGLNMERPEAWIAASLHSDMKGDKEGSLRLIERAIQVGPRHVLGYHVKGTLLLSLGRAEAAASAFLQAGQLKKDIYASKGLVDAYLSQNRFKEALGAAKEALADTPKSAKAITLVGRVLAHLPEGREKAKRAFQRALAIDPLTVDAVLALADMHIAEGELDSCIDLLKRFLQGSGHDFLHTKLGEVYCLNENFSEALACYHTAISMNPASAPAAAGLERLERLLRGGGGGEGMEGQGEEGGEEGEEGEEGELEDEDM 669
+T A+ + LL + S I Q L+DSA+L+GGLLLC TRPA+IS SP W++HA SLELYAD+L+GK E RAL YQQA+AHRK A++++ S T + I KEA CHLSLN+PSQALRALLS+ R++ + V +TLG VY LG+ DA AYK A+ +P L+AL+ LA G E++W L+ A EG R G S + S+ RR S S + +E Q LR +LPWL+++ AH+A Q++ AA F ELE +FP STHCLLQ+AR Q+ MDL DA TFGR V GEGG E VMEHMDYYAV+LRQ+ A G LA LAHRLM ++ RPE WIAA+LHSD+KG+KE L L+E+AI+ HVLGY V+GTLLL+LG+AEAAAS+FLQ +L KD+ KGLVDAYL Q++FKEALG AKEA + PKSA AITLVGRVLA LPEGREKAKRAFQRAL+++P TVDA+LALAD+H+ E D CI LL LQ SGHDFLHTKLGE Y ++ +FS+ALA ++TA+SMNP+SAPA AGLE+LE+LLRG + EE GE E EE E E++DM
Sbjct: 10 ATATYHAEDVRLLHHYIRSLIGQKLYDSADLIGGLLLCCTRPAIISH---------------SPSMWDLHATSLELYADSLVGKGERYRALSFYQQANAHRKCAASSSLRCSPTQLLGLPPTSPPCPPPSLPINFKEARCHLSLNKPSQALRALLSVSTSTRESSVPVAVTLGHVYRRLGMQHDAQTAYKDAVGHDPLALEALIGLAKTGMDEEDIWRLVTGPWAPCGGARPEEGARRGVGKGRGGSDEAKGSSSRRPRGSQ--AYESVDSRGRLSSDENSVWQVLRTKTLPWLKVWVQAHVALAAQNWAVAAERFGELEVRYFPKSTHCLLQRARAQVGMDLYMDAQQTFGRAVEGEGGGE------VMEHMDYYAVVLRQRAAKGELAHLAHRLMDVDTRRPEPWIAAALHSDLKGEKESPLTLVEQAIKTDHEHVLGYQVRGTLLLALGKAEAAASSFLQGSRLHKDMNGYKGLVDAYLVQHKFKEALGCAKEAFSAMPKSATAITLVGRVLAQLPEGREKAKRAFQRALSMNPSTVDALLALADLHLGAQEYDKCIHLLSSSLQNSGHDFLHTKLGEAYAISGDFSKALASFNTAVSMNPSSAPATAGLEKLEKLLRG--------VEPEEDGEGEEVDEEVEAEEDDM 631
The following BLAST results are available for this feature:
BLAST of NO21G01200.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 Expect = 1.40e-151 / Id = 52.07 Sequence EWM22628.1
Match Name E-value Identity Description
EWM22628.1 1.400e-151 52.07 anaphase-promoting complex subunit [Nannochloropsi... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01200.1 ID=NO21G01200.1|Name=NO21G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=5974bp back to top protein sequence of NO21G01200.1
>NO21G01200.1-protein ID=NO21G01200.1-protein|Name=NO21G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=675bp back to top mRNA from alignment at chr21:364013..370528+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01200.1 ID=NO21G01200.1|Name=NO21G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=6516bp|location=Sequence derived from alignment at chr21:364013..370528+ (Nannochloropsis oceanica)A
TGGCCTCCCTCCTGCAAGAATCCGCTCCATCCAGCCGCGTCAAAACCATC
AATTCCACCCCATTGCTTCGGGCCGATCACCTCCATCTCCTGCAACAACA
AGTCCACTCCTTCATCCAGCAAGGCCTTTTCGACTCCGCAGAGCTCTTAG
GAGGATTACTTCTATGCCGAACCCGCCCAGCAGTCATTTCATCAAAATTT
ACTCAATCCCCGTCGTCGTCGTCCTCTTCTTCCTCATCCTCCCCAGAACA
GTGGGAGATGCATGCCCACTCCCTCGAGCTTTACGCAGATGCCTTGATCG
GCAAAAAGGAAGTCCGACGGGCCTTGTACTGTTACCAACAAGCTGATGCC
CACCGGAAGCTCGCTTCAACAGCTGCAGCTAGTTCAACCGCTGCATCGTC
CTCGTCCCACTCCTGCAGCACCTTGTCCTCATCCTTGACCACCATCAAGG
TCAAGGAAGCCCATTGTCACCTCTCTCTCAATGAACCTTCGCAAGCCTTG
CGCGCCCTCCTCTCGATCCCTCCTCCTCATCGCCAAAACTTCCTTGCAGT
ACAACTGACACTTGGAAAAGTGTATGTCATTCTAGGCCTAATACAAGACG
CGATTATCGCATACAAGCTAGCAATAAGTCTCAATCCATTCGTGCTTGAC
GCCCTCGTGGAATTGGCGGGGCTAGGGGCAGGGAATGAGGAGGTCTGGGG
TTTGATTGTCAGGGAAGGAGTTTCTACCTCTGCCGCTGCTGGGAGAGAAG
GCGGACGTCCAGGAAGTAGTAGTTGCAGTAGCAGTAGTGCCAGCAGCAGC
AGCAGCAACGTACGACGACGCAACAACAGTAGCAACAGCACCAACAGCAG
CAACAGCCACGACAACAATCGCAACCGAAACGAGCAAGAAGACTTGCAGC
AACTCCGTGCCGCTTCCCTCCCATGGCTCCAGCTTTTTTTCTCCGCCCAC
CTCGCCAGGCACACGCAACACTACCCGGAGGCCGCGAATGCCTTCAGTGA
ACTCGAAACCACTTTCTTCCCGTCTTCCACCCACTGCCTCCTCCAAAAGG
CGCGGGTCCAAATCGAGATGGATCTCCTCACCGACGCTCACGCGACGTTC
GGGCGAGTCGTGGGTGAGGGAGGGGTGGAGGGAGGGAGGGAGAAGGGGGT
AATGGAGCACATGGATTACTATGCTGTTCTCCTGAGGCAGAAGGGGGCGG
GAGGGACGCTGGCGGGCCTGGCACACCGGTTGATGGGGCTGAATATGGAG
AGGCCTGAGGCGTGGATTGCGGCGAGCTTGCACAGTGATATGAAAGGCGA
TAAGGAAGGAAGTCTGAGGTTGATAGAGCGGGCAATACAG GTATGTTTTC
CTTCTTCCTTTTTTTGCTCCCTCTCTTTCACTCTCTCTCTCTCTCTCTCA
CTCTCTCTCTCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTTTCAATCTCTCTTTTACTCTCTCTCTGCCTCTCTCTGCCTTT
CTCTCTCAGTCTCTCTCTATTTGAATGTCTCTCTCTCTCTCTCAATCTCA
CTCAAGGGAGGGTTTTCCCCCATGTCTCCTCCACTTATCGCCTACTTCTC
TCTCTCTCTCCTCGTCCTCCCCACCGGTCTGACTCCCTTGTTATTCCATG
TTTTCCCTATCCTCCCCCCCTCCTTCCCTTCGTCTCCAGGTGGGACCTCG
CCATGTGCTCGGATACCACGTCAAGGGCACGTTACTCCTCTCTTTAGGAA
GGGCAGAGGCAGCCGCCAGCGCCTTCCTACAAGCTGGGCAGCTCAAGAAG
GACATCTACGCATCCAAGGGACTGGTGGATGCCTACCTGTCGCAAAATCG
CTTTAAAGAGGCACTGGGGGCGGCGAAGGAAGCTCTCGCGGACACGCCGA
AGAGCGCCAAG GTACGTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCT
TCCTCCCTCCCTCCCTCCCTCGCTTGTCGAAGCCCAATCAACAGAAGGGA
GAAATGAGCGAAGCGAAGCACGGGGACAAGAGCAGCAATGGTGTCTTCAT
TATCGTCAAGTTCTTTTTCTTTTCACACACTGTCCCTTCCATCCTCCATC
GCAGGCCATCACTCTCGTAGGCCGTGTGCTCGCTCATTTGCCCGAGGGGA
GGGAAAAAGCCAAAAGAGCGTTTCAACGAGCTCTGGCAATCGATCCTTTG
ACGGTCGATGCGGTGCTCGCACTGGCGGACATGCACATAGCCGAAGGGGA
ACTCGATAGTTGTATCGACTTGTTAAAAAGGTTCTTACAAGGAAGTGGTC
ATGACTTTCTGCATACGAAGCTAGGGGAGGTTTATTGTTTGAATGAAAAT
TTTTCGGAAGCGCTCGCATGTTATCATACGGCTATATCGATGAACCCAGC
TTCGGCCCCTGCTGCGGCCGGGTTAGAGAGGCTAGAGCGGTTGTTAAGGG
GGGGGGGGGGAGGGGAGGGGATGGAGGGGCAGGGGGAGGAAGGGGGAGAG
GAGGGGGAGGAGGGGGAAGAGGGAGAGTTGGAGGATGAGGATATGTCGGG
TGAGGTGGTCTATTGA back to top Coding sequence (CDS) from alignment at chr21:364013..370528+
>NO21G01200.1 ID=NO21G01200.1|Name=NO21G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=2025bp|location=Sequence derived from alignment at chr21:364013..370528+ (Nannochloropsis oceanica) back to top