NO21G01180.1, NO21G01180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01180.1
Unique NameNO21G01180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1820
Alignment locationchr21:360581..362400 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:360581..362400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01180.1 vs.
Match: EWM22620.1 (histidine acid, partial [Nannochloropsis gaditana])

HSP 1 Score: 315.8 bits (808), Expect = 2.600e-82
Identity = 179/319 (56.11%), Postives = 226/319 (70.85%), Query Frame = 0 
Query:   22 RVAFLLLLRDISAGSLPNGGWVRSSMST-CNASASFSSLSAASSATSTPNSTSYAHHTYRPRRDLYTPPPAHLSLKQVVIIARHGDRAPIARNVGQAVQDSPSSQELWQSKLPSLQELQQWSATYPLSDPSLKPVDQHEHPYAQLTRRGAEELRALGKHLRERYVCHLKWLPAQLHSA---ATATTGGESENLDVFTSSGSSSSDFATKPRLIYARATNIRRTQQSCQNLLLGLYPP----PSSPSSVPPLTIDVRPTHLETLYPNADRSCCRQGEIIAELRQQHYRLPPSLVRSITEEAHVRLGLTPSLTSATPALVP 333
            ++A +L++  +S+ S   G   R + +T  + + S S+  A S+ TS+P+S S  HH+YRPR  LYT PP+   L+QVVIIARHGDRAPIARNVGQAVQDSP +Q LW SKLPS QE++ W++ +PL+DPSL+PVD  EHPYAQLTR+GA+EL+ALG+HLR+RYV  LKWLPA LH++   A   +GG S      ++  SSS   ++ P  ++ARATNIRRTQQS QNLLLGLYP     PS  SS PPL I VRPT  ETLYPNADRSCCRQGEIIAEL  +H+ +P + V  +T EA  RLGL P    A+  + P
Sbjct:   21 KLASVLVIGGLSSVSSGTGMAARETNTTGASCAGSSSTRIACSTPTSSPSSHS-THHSYRPRDGLYTAPPSSFKLQQVVIIARHGDRAPIARNVGQAVQDSPETQALWLSKLPSSQEVEAWTSAFPLADPSLRPVDYDEHPYAQLTRKGAQELQALGRHLRKRYVTDLKWLPASLHASGGHAPHASGGLS------SAPSSSSPPSSSPPSFLHARATNIRRTQQSAQNLLLGLYPDGAPHPSPSSSAPPLAIQVRPTASETLYPNADRSCCRQGEIIAELASRHFDMPRAHVEDMTREAFARLGLVPHPEPASAKVDP 332
The following BLAST results are available for this feature:
BLAST of NO21G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800Expect = 2.60e-82 / Id = 56.11SequenceEWM22620.1
Match NameE-valueIdentityDescription
EWM22620.12.600e-8256.11histidine acid, partial [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01180NO21G01180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01180.1NO21G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01180.1.cds1NO21G01180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01180.1 ID=NO21G01180.1|Name=NO21G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp
CAGGCTACAGGAGGACGACGACGCCGGCACGTGGGACTCAAGAAGCCGCC
AACATTCCGTTCTAGAGCTTGCATGCGCGTCTTCTCCTACCTGTCCACGT
CCACCACCCGCGGTTCCTGGGCCCAGTGCCTTGAGCGAGTGGCTTTTTTG
TTATTGCTTCGGGACATCAGCGCCGGCTCTCTCCCCAACGGCGGCTGGGT
GCGTTCTAGCATGTCCACATGCAACGCTTCTGCCTCCTTTTCATCCTTGT
CCGCCGCCTCGTCCGCCACATCCACCCCAAATTCGACTTCTTACGCCCAC
CACACCTACCGCCCCCGCCGAGATCTCTACACTCCTCCACCCGCCCATCT
GAGCCTTAAGCAAGTCGTCATCATCGCACGCCACGGCGACCGCGCACCCA
TCGCTCGGAACGTCGGCCAAGCCGTCCAAGACTCGCCCTCCAGTCAGGAA
TTATGGCAATCCAAACTCCCCTCCCTCCAAGAATTGCAGCAGTGGTCAGC
AACTTACCCCCTCTCCGACCCGTCGCTCAAACCCGTCGATCAGCACGAGC
ACCCTTACGCGCAACTCACCAGGAGGGGGGCCGAGGAGTTGAGGGCCTTA
GGGAAGCATCTCAGGGAGCGTTATGTATGTCACTTGAAGTGGTTGCCCGC
CCAACTTCACTCAGCCGCCACCGCTACTACCGGCGGTGAGAGCGAGAACC
TAGACGTTTTTACTTCCTCTGGCTCTTCCTCCTCTGACTTTGCAACCAAG
CCTCGTCTAATTTACGCTCGAGCCACCAACATCCGCCGCACGCAACAGTC
CTGTCAAAATCTCCTGTTGGGTCTCTACCCACCTCCTTCCTCGCCCAGCT
CCGTCCCCCCGTTGACAATTGACGTGCGTCCCACCCACCTAGAGACGTTG
TACCCCAACGCCGACCGCTCCTGCTGCCGACAAGGAGAGATCATCGCCGA
GCTGCGGCAGCAACACTACCGCCTCCCTCCCTCCCTCGTCCGCAGCATCA
CCGAGGAAGCTCATGTTCGTCTCGGTCTGACTCCTTCCTTGACCTCCGCT
ACCCCTGCGCTGGTTCCATGGAATCAGGTGCGAGAAGTGTGGACATGCCA
TGCCGTGCATGGATTGCCATTTCCCTCTTCTGTGGAGGGAGGAGGGGTGG
AAGGGGGGGAAGAGGAATGGTTTGAAAGGGTCGAGCAATTTACCTGTCGG
ATGTGGGGGTCTTGGTTTCGGGAGGAGGAGATGACGAGACTGGCCATTGG
CCCCTTCCTGAAAGAGGTCCTGGAGGGGATAGAAGGGAAGGCGAGTGGGA
GGAAGGGTCAGAGGGAAGGTATGGGGGAGGGCGGGAAGGTGGAACATGTG
GTGGTGTACGCGGGGCATGACTCGTCCATCGTGCCTGTGTTGGCTGCACT
TGGGATCTGGGAGGATGTCTGGCCCCCCTATGCTGCAAACATTGTCTTGG
AGCTTGCAGAGAAGGAGGGAGGGAGGGAAGGAGGAAGGGTGGGAGAGCAT
TTTGTGCGGATATTGTATAATGATGAGGAGAGGGTGTTGTTTGGAGAAGA
AGGGGAGGGATGGAGGGAGGGAGGGGAGGTGTGGTATCCCTTAGAGGTGT
TTTCGGAGAAGATAAAGCGGTTTCTGCCGACGGATTATGAAAAGGAGTGT
CGGTGTCGAAATGACGAAGAGGGGAAGGATGGCGGGGAGGAGGACGAGGT
CGCGTCGTCGATCAAGTGAGCGAGGAGGGAGATTGAGATGTCTGGATCTA
AACGTTTGAGGAAAAGGTGCCCAACGGATAAACCGAGAATGAACGCGGCT
ATAAATAGCCAGTATTGTAA
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protein sequence of NO21G01180.1

>NO21G01180.1-protein ID=NO21G01180.1-protein|Name=NO21G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MRVFSYLSTSTTRGSWAQCLERVAFLLLLRDISAGSLPNGGWVRSSMSTC
NASASFSSLSAASSATSTPNSTSYAHHTYRPRRDLYTPPPAHLSLKQVVI
IARHGDRAPIARNVGQAVQDSPSSQELWQSKLPSLQELQQWSATYPLSDP
SLKPVDQHEHPYAQLTRRGAEELRALGKHLRERYVCHLKWLPAQLHSAAT
ATTGGESENLDVFTSSGSSSSDFATKPRLIYARATNIRRTQQSCQNLLLG
LYPPPSSPSSVPPLTIDVRPTHLETLYPNADRSCCRQGEIIAELRQQHYR
LPPSLVRSITEEAHVRLGLTPSLTSATPALVPWNQVREVWTCHAVHGLPF
PSSVEGGGVEGGEEEWFERVEQFTCRMWGSWFREEEMTRLAIGPFLKEVL
EGIEGKASGRKGQREGMGEGGKVEHVVVYAGHDSSIVPVLAALGIWEDVW
PPYAANIVLELAEKEGGREGGRVGEHFVRILYNDEERVLFGEEGEGWREG
GEVWYPLEVFSEKIKRFLPTDYEKECRCRNDEEGKDGGEEDEVASSIK*
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mRNA from alignment at chr21:360581..362400-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01180.1 ID=NO21G01180.1|Name=NO21G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp|location=Sequence derived from alignment at chr21:360581..362400- (Nannochloropsis oceanica)
CAGGCTACAGGAGGACGACGACGCCGGCACGTGGGACTCAAGAAGCCGCC
AACATTCCGTTCTAGAGCTTGCATGCGCGTCTTCTCCTACCTGTCCACGT
CCACCACCCGCGGTTCCTGGGCCCAGTGCCTTGAGCGAGTGGCTTTTTTG
TTATTGCTTCGGGACATCAGCGCCGGCTCTCTCCCCAACGGCGGCTGGGT
GCGTTCTAGCATGTCCACATGCAACGCTTCTGCCTCCTTTTCATCCTTGT
CCGCCGCCTCGTCCGCCACATCCACCCCAAATTCGACTTCTTACGCCCAC
CACACCTACCGCCCCCGCCGAGATCTCTACACTCCTCCACCCGCCCATCT
GAGCCTTAAGCAAGTCGTCATCATCGCACGCCACGGCGACCGCGCACCCA
TCGCTCGGAACGTCGGCCAAGCCGTCCAAGACTCGCCCTCCAGTCAGGAA
TTATGGCAATCCAAACTCCCCTCCCTCCAAGAATTGCAGCAGTGGTCAGC
AACTTACCCCCTCTCCGACCCGTCGCTCAAACCCGTCGATCAGCACGAGC
ACCCTTACGCGCAACTCACCAGGAGGGGGGCCGAGGAGTTGAGGGCCTTA
GGGAAGCATCTCAGGGAGCGTTATGTATGTCACTTGAAGTGGTTGCCCGC
CCAACTTCACTCAGCCGCCACCGCTACTACCGGCGGTGAGAGCGAGAACC
TAGACGTTTTTACTTCCTCTGGCTCTTCCTCCTCTGACTTTGCAACCAAG
CCTCGTCTAATTTACGCTCGAGCCACCAACATCCGCCGCACGCAACAGTC
CTGTCAAAATCTCCTGTTGGGTCTCTACCCACCTCCTTCCTCGCCCAGCT
CCGTCCCCCCGTTGACAATTGACGTGCGTCCCACCCACCTAGAGACGTTG
TACCCCAACGCCGACCGCTCCTGCTGCCGACAAGGAGAGATCATCGCCGA
GCTGCGGCAGCAACACTACCGCCTCCCTCCCTCCCTCGTCCGCAGCATCA
CCGAGGAAGCTCATGTTCGTCTCGGTCTGACTCCTTCCTTGACCTCCGCT
ACCCCTGCGCTGGTTCCATGGAATCAGGTGCGAGAAGTGTGGACATGCCA
TGCCGTGCATGGATTGCCATTTCCCTCTTCTGTGGAGGGAGGAGGGGTGG
AAGGGGGGGAAGAGGAATGGTTTGAAAGGGTCGAGCAATTTACCTGTCGG
ATGTGGGGGTCTTGGTTTCGGGAGGAGGAGATGACGAGACTGGCCATTGG
CCCCTTCCTGAAAGAGGTCCTGGAGGGGATAGAAGGGAAGGCGAGTGGGA
GGAAGGGTCAGAGGGAAGGTATGGGGGAGGGCGGGAAGGTGGAACATGTG
GTGGTGTACGCGGGGCATGACTCGTCCATCGTGCCTGTGTTGGCTGCACT
TGGGATCTGGGAGGATGTCTGGCCCCCCTATGCTGCAAACATTGTCTTGG
AGCTTGCAGAGAAGGAGGGAGGGAGGGAAGGAGGAAGGGTGGGAGAGCAT
TTTGTGCGGATATTGTATAATGATGAGGAGAGGGTGTTGTTTGGAGAAGA
AGGGGAGGGATGGAGGGAGGGAGGGGAGGTGTGGTATCCCTTAGAGGTGT
TTTCGGAGAAGATAAAGCGGTTTCTGCCGACGGATTATGAAAAGGAGTGT
CGGTGTCGAAATGACGAAGAGGGGAAGGATGGCGGGGAGGAGGACGAGGT
CGCGTCGTCGATCAAGTGAGCGAGGAGGGAGATTGAGATGTCTGGATCTA
AACGTTTGAGGAAAAGGTGCCCAACGGATAAACCGAGAATGAACGCGGCT
ATAAATAGCCAGTATTGTAA
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Coding sequence (CDS) from alignment at chr21:360581..362400-

>NO21G01180.1 ID=NO21G01180.1|Name=NO21G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at chr21:360581..362400- (Nannochloropsis oceanica)
ATGCGCGTCTTCTCCTACCTGTCCACGTCCACCACCCGCGGTTCCTGGGC
CCAGTGCCTTGAGCGAGTGGCTTTTTTGTTATTGCTTCGGGACATCAGCG
CCGGCTCTCTCCCCAACGGCGGCTGGGTGCGTTCTAGCATGTCCACATGC
AACGCTTCTGCCTCCTTTTCATCCTTGTCCGCCGCCTCGTCCGCCACATC
CACCCCAAATTCGACTTCTTACGCCCACCACACCTACCGCCCCCGCCGAG
ATCTCTACACTCCTCCACCCGCCCATCTGAGCCTTAAGCAAGTCGTCATC
ATCGCACGCCACGGCGACCGCGCACCCATCGCTCGGAACGTCGGCCAAGC
CGTCCAAGACTCGCCCTCCAGTCAGGAATTATGGCAATCCAAACTCCCCT
CCCTCCAAGAATTGCAGCAGTGGTCAGCAACTTACCCCCTCTCCGACCCG
TCGCTCAAACCCGTCGATCAGCACGAGCACCCTTACGCGCAACTCACCAG
GAGGGGGGCCGAGGAGTTGAGGGCCTTAGGGAAGCATCTCAGGGAGCGTT
ATGTATGTCACTTGAAGTGGTTGCCCGCCCAACTTCACTCAGCCGCCACC
GCTACTACCGGCGGTGAGAGCGAGAACCTAGACGTTTTTACTTCCTCTGG
CTCTTCCTCCTCTGACTTTGCAACCAAGCCTCGTCTAATTTACGCTCGAG
CCACCAACATCCGCCGCACGCAACAGTCCTGTCAAAATCTCCTGTTGGGT
CTCTACCCACCTCCTTCCTCGCCCAGCTCCGTCCCCCCGTTGACAATTGA
CGTGCGTCCCACCCACCTAGAGACGTTGTACCCCAACGCCGACCGCTCCT
GCTGCCGACAAGGAGAGATCATCGCCGAGCTGCGGCAGCAACACTACCGC
CTCCCTCCCTCCCTCGTCCGCAGCATCACCGAGGAAGCTCATGTTCGTCT
CGGTCTGACTCCTTCCTTGACCTCCGCTACCCCTGCGCTGGTTCCATGGA
ATCAGGTGCGAGAAGTGTGGACATGCCATGCCGTGCATGGATTGCCATTT
CCCTCTTCTGTGGAGGGAGGAGGGGTGGAAGGGGGGGAAGAGGAATGGTT
TGAAAGGGTCGAGCAATTTACCTGTCGGATGTGGGGGTCTTGGTTTCGGG
AGGAGGAGATGACGAGACTGGCCATTGGCCCCTTCCTGAAAGAGGTCCTG
GAGGGGATAGAAGGGAAGGCGAGTGGGAGGAAGGGTCAGAGGGAAGGTAT
GGGGGAGGGCGGGAAGGTGGAACATGTGGTGGTGTACGCGGGGCATGACT
CGTCCATCGTGCCTGTGTTGGCTGCACTTGGGATCTGGGAGGATGTCTGG
CCCCCCTATGCTGCAAACATTGTCTTGGAGCTTGCAGAGAAGGAGGGAGG
GAGGGAAGGAGGAAGGGTGGGAGAGCATTTTGTGCGGATATTGTATAATG
ATGAGGAGAGGGTGTTGTTTGGAGAAGAAGGGGAGGGATGGAGGGAGGGA
GGGGAGGTGTGGTATCCCTTAGAGGTGTTTTCGGAGAAGATAAAGCGGTT
TCTGCCGACGGATTATGAAAAGGAGTGTCGGTGTCGAAATGACGAAGAGG
GGAAGGATGGCGGGGAGGAGGACGAGGTCGCGTCGTCGATCAAGTGA
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Synonyms
Publications