Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:355384..360560 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01170.1 vs.
Match: EWM22669.1 (dna polymerase theta [Nannochloropsis gaditana])
HSP 1 Score: 999.6 bits (2583), Expect = 1.100e-287
Identity = 690/1429 (48.29%), Postives = 875/1429 (61.23%), Query Frame = 0
Query: 259 LTHSLGRGPTAPSPTGKKRMQHSPCQQTLPRSSSFSHAYSSSSSHPPRPLLPPVPVQDSPQGLKLHAPACASAPPPPLPPSCPHTSF------SSNLPPFLPPPLPFSRHKSTSAVTSAVLATAQTEAAKSTIGAAAAALVTALPAAEEEKRQPSQQEGHGHLLPPPPPPLHRPYRSFRVQLLQQQQHTQRHEAPSEKHQLQPSPPQPEISYPFSHSHVSPYRQQQQQRHQQQLKDEEEVSNFSPSLAPRFAPSPCHGGSPPPIPPPSQASEGAEGGG-------GRIRGVKEGGQGRGR-----GRGGMLQ--EGLGIWRR-------VGEGGGRGGGSVG-----RRTAVGSAYLGRGRGVRRRGGVADKVYLALNGDRLRGREAVERSKEDLLKMRGGLTFNAQRAAIQKSLVTSSGSSSGSVEKRSLQGAKEGGNGEKKKKKKKEEEEEEEEAKAHLSYPAWGLPEVLVRSYEEMGVHKLFPWQVECLEAGQGRVLREGRNLVYSAPTSGGKTLVAELLMVRALTHAVESGTAMFVVPFIALAEEKARYFRQIWAGLELGVKSFHSDAVDSSLTENVHVAVCTIERANALVNRLLERGELGRLKVVVVDELHMIGDDSRGFLIEVMLAKLRMAASL-------------------------SPSLAGAV-------GGTHIQIVGLSATLPNLTQIASWLNAHLYITKFRPVQLSLLLCTGKHLEELKPLPPAHPP--TPPSLPTSSWTRVRDLPPYHSDDTQAVIHLCLETVSLGQGVLIFCSNRAWTERCASQVARAISVGLKDDLLREKVRQGRKELLIRLNLTPVGLSADLESLVREGVAFHHAGVTMEERTLIEEGFKTGILSVIVATSTLAAGVNLPARRVIVRTRKGFNGAEIKAFEFHQMCGRAGRYGIDGSGEAILMTSEKELSLARAFASRPLPPMRSALQTGMGGGLERALLEVVMGKLAVGEEEEETGEGKGWMEVFARCTLFATQMGE--GGEEAGEEGGVMG-------RFREALVYLVEHRFIEGRSSLKGEEREEDKMKMKTNQEEGREREEEEEAEKNWKEEKKGRG--SAKDVSVVSLAGPPAAKPGPGSGATPVEQGQQEQLSAKRTPLLALRGTQLGAATFFSSMSPYDATLMLTALSQAARGGLILTSDLHLLYLCVPPNRTYFTPDWNDLVRRSQRWAPEVATVAAAVGVTERTLERLAL-----GGRSWPMSREG---GREKE-REEEEGVARRFVYGLMLHEMLQEVPLVRLERGEVNRGTLQALRSDARMFCGMMGVFCKHLKWMALARLIQGLSVRLEYGVGEELVGLCRIDPELMHALRARALFDAGFQGADELAVASVEDVARVLVKSMPFEAETKGEGGRGG--GGGGERGRADRVAERIAGLIVRKARGVVRKQL 1600
L H+ G P +R + Q +L ++ + + S+HPP PP +A SA P LP S P+ S N+P P P R + +++ + + +E T+ T +E +G + P P PYR R + + Q + + + Q + P++ S S S Q+Q Q+ V+ + + +P P + + GG IRG+ G+GRG G GG + EGLGIWRR VG G G G +G R + G A GRGRG R YLALNG+RL+G A+ER ++D K++ GLTF AQR+A++ +L+ ++ G +G +G + EE +AK LSYP WG+PEV+VRSYEE+GV +LFPWQV CLEAGQGRVLREGRNLVYSAPTSGGKTLVAELLM+RALTHAVE GTA+FVVPF+ALAEEKA YFR++WAG++LGVK+FHSDAVD++L+E+VHVAVCTIERANALVNRLLERGEL R+KVVVVDELHM+GD RGFLIEVML+K+R+AASL + GA +QI+GLSATLPNL Q+A+WL+AHLY+T FRPVQLSLLLC GK LE L+ PP +P + S S+W +R+LP SD+TQAV+HLCLE+VS G GVL+FC++RAWT+RCA +ARA + L KV++GR ELL RL LT VGL+ +LE V+ GVAFHHAG+TMEERTL+E GFKTG+LS +VATSTLAAGVNLPARRVIVR+R GF+G E+ +F QMCGRAGR+GID +GEAILMT E ++ ARAFA+R LPPM SAL G GGG+ERALLEVVMG+LA G +EEE GEG W+E FARCTL+A Q E G EE GE GV G RFR L YLV++R+I GR S+ +E ++ + G +E+ + E G+G + +V PAA GA P L R P GTQLGAATFF+ MSP DAT ML +LSQA G+IL+SDLHLL+LCVPPNR YFTPDW+DL RRSQRWAPEVA+VAAA+GV+E +ER+ G R+ + G G +K +E + RRFVY L+LH+MLQEVPL++LE G V RGTLQAL+S+AR+FCGM+ VFCKHL+W+ LARLI+GLS+RLE+ VGE+L+ LCR+ PEL+HA RARALF+AGFQ +++A A VEDVA VL+ SMPF AE R G GG + G RVA RIA LIVRKA+ V R+++
Sbjct: 148 LPHADTPGSDGPRRYVSQRARERLVQGSLQHTAITVFSVEARSAHPPEK--PP----------DQNATNLPSAQGPVLPSSPPNQSCRLSPPRDGNIPLAFVPVFP-PRPAPAACLSAPSIPPSSSETLPPTLHLPGFERKTV---SETRPVPKDPNDGSLRVKLGPSAPAPPPYRPTRTRRHEPTQPPSALASSISRQRGQDNVSGPKLLAQES-SRASAVGQKQGQQTYLLPSAPPPVTTTVTTTRTKLSPKIS------TTAPQETCGDNEDWGGPAAAFNAAAIRGISRQGEGRGGKNGEPGGGGPRRPVEGLGIWRRGRGDPRKVGRGVGHRKGVLGNVEANRGSVKGPA--GRGRGGRGNA----MTYLALNGERLQGPAAMERHRQDTAKIQQGLTFTAQRSALRAALLARQPTAVG-------EGGVDGSSHGGVPIPPGRASTEETDAKNLLSYPGWGIPEVIVRSYEELGVRRLFPWQVACLEAGQGRVLREGRNLVYSAPTSGGKTLVAELLMLRALTHAVEGGTALFVVPFVALAEEKAGYFRRVWAGVDLGVKAFHSDAVDATLSEDVHVAVCTIERANALVNRLLERGELARVKVVVVDELHMVGDAGRGFLIEVMLSKVRLAASLWSQASLMASDHATGNAVRLDPAAEVNDQRGGATVDCTTRKNAARVQIIGLSATLPNLPQVAAWLDAHLYVTDFRPVQLSLLLCAGKRLERLRRAPPPNPSKASSASASLSAWEPLRELPSTISDETQAVLHLCLESVSQGHGVLVFCTSRAWTQRCAKSIARAFAACLGPWTEAVKVQEGRNELLARLRLTSVGLAKELEESVKHGVAFHHAGLTMEERTLLEGGFKTGVLSTLVATSTLAAGVNLPARRVIVRSRIGFDGQEMSVAQFQQMCGRAGRFGIDETGEAILMTREADVQAARAFAARCLPPMMSALHVGEGGGVERALLEVVMGRLA-GCKEEEGGEG--WLETFARCTLYAVQAHEEEGKEENGEGLGVEGQACKVLQRFRRGLDYLVQNRYI-GRRSIAAV-KEVSGSTVRDGETSGGSIVGPDESHLD-PERGGGQGILQGANAAVDGTRPVPAATREHAGGAGP-------SLPTAR-PKTCYFGTQLGAATFFAGMSPRDATAMLASLSQATTKGVILSSDLHLLFLCVPPNRRYFTPDWHDLARRSQRWAPEVASVAAAIGVSESAIERVVRPRSTGGRRNGGLGERGDGLGNDKSVGGQEVSLLRRFVYSLVLHDMLQEVPLLQLETGGVGRGTLQALQSEARIFCGMIVVFCKHLQWVTLARLIEGLSLRLEHRVGEDLLPLCRMGPELVHAARARALFEAGFQAPEDVAAARVEDVAAVLLTSMPFAAEHDSAKPRQGPKDGGRQGGGDKRVARRIADLIVRKAQEVARQKV 1526
The following BLAST results are available for this feature:
BLAST of NO21G01170.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 Expect = 1.10e-287 / Id = 48.29 Sequence EWM22669.1
Match Name E-value Identity Description
EWM22669.1 1.100e-287 48.29 dna polymerase theta [Nannochloropsis gaditana] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01170.1 ID=NO21G01170.1|Name=NO21G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=5177bp back to top protein sequence of NO21G01170.1
>NO21G01170.1-protein ID=NO21G01170.1-protein|Name=NO21G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1645bp back to top mRNA from alignment at chr21:355384..360560+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01170.1 ID=NO21G01170.1|Name=NO21G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=5177bp|location=Sequence derived from alignment at chr21:355384..360560+ (Nannochloropsis oceanica)ATGCAACCGCCGCCGCCGCCACCGTCACCCATAGATGCCATTCAGCCAGC
CGACCCCACTTCCCCTTCCGCTTCCGCCTCCTCCTGGACTCCGCCCATCC
TACCAAACGCCATGCGTGCGCCGTTGGGTCGCAATGGACAGTCTCCTCTC
CAGATGCCTTCTCCGCGGGGTACAAAACGGCTGTTGGCTTCGCCCGGAGC
AGCAGTGCAGGCCGACAGCTCTGCCAGTCTCGCGCTCGTCCCACCACTTA
AGTTGCCCCCGCCGCCTCCAGCTCTTGCCTCTGCCTTGTCATACAATGCC
TTGTTGAGTGATGACGACCGCGACTTTATCAATTGCGCAGAGTTTGTATC
CTTCTTTGCCGAGGATGTCGAGGAAGGGGAGCAATGGGAAGGGGAAAGGA
AGAAGGAATGCCGGCATGAGAGAGTATATGAGGAAGCCGCCGCCCCAACA
GCAGGTCCAATATCTGAAGCAGCAACATTTCAACTACCAGTCTCCGTAAC
AGCGCCTTCTCTAATTCCTTTGGAGCGAGCGGTCATGCTCCAACATCTCC
CCGCACATGGTCGCTACATCTCCCAACGTGGTCGCGAGGAGGGGACGGAG
AAGGAGGAAGCAGTGTCCCCAGGACCACCACCCGAAGCAGAGTCATCACC
TCTACCACGAGCTGCCCTCGAAGCATCGCCTCCTCGACCTCCTCCTTCTT
CCTCCACACCATCTTTTCGTCGATACATATCCCAGCGTGGCTGTGAGCTG
CTTGCTCAGAGAAAAGCGATGCAGCTGACACACTCACTAGGCCGAGGACC
AACCGCTCCTTCCCCCACCGGCAAAAAACGCATGCAGCACAGTCCTTGCC
AACAAACGCTTCCACGATCCTCTTCTTTCTCTCACGCATATTCATCAAGC
TCTTCACATCCTCCTCGTCCTCTCCTTCCTCCTGTCCCTGTGCAAGACTC
GCCGCAAGGCTTGAAATTGCATGCACCAGCATGCGCCTCGGCCCCCCCTC
CTCCCCTTCCTCCCTCTTGTCCCCATACTTCTTTCTCGTCAAACTTGCCT
CCTTTCCTCCCTCCTCCTTTACCCTTTTCACGGCACAAATCAACATCGGC
AGTGACCTCGGCAGTACTAGCAACAGCACAAACGGAAGCTGCGAAATCGA
CAATAGGAGCTGCAGCAGCAGCATTAGTCACCGCTCTACCAGCAGCGGAA
GAAGAAAAAAGGCAACCATCACAGCAAGAAGGACACGGTCATCTTCTTCC
TCCGCCTCCGCCTCCTCTTCATCGTCCCTATCGATCTTTCCGTGTTCAGC
TGCTGCAGCAGCAGCAGCACACACAACGACATGAAGCCCCCTCCGAGAAA
CATCAATTGCAGCCCTCGCCGCCGCAGCCTGAGATTTCCTATCCTTTCTC
TCATTCGCACGTGTCGCCCTATCGACAGCAGCAGCAGCAGCGACATCAGC
AACAGCTGAAGGACGAAGAGGAGGTTTCAAACTTTTCTCCTTCACTCGCA
CCACGTTTCGCACCATCGCCCTGCCACGGAGGTTCCCCCCCACCTATTCC
TCCCCCGTCACAAGCGTCAGAAGGAGCAGAAGGAGGTGGAGGAAGAATAA
GAGGAGTGAAGGAGGGAGGGCAAGGACGGGGGAGGGGGAGGGGGGGCATG
CTGCAGGAAGGGCTCGGGATCTGGCGTCGTGTTGGAGAAGGAGGAGGCAG
AGGGGGAGGTAGTGTAGGACGACGAACTGCTGTTGGTAGTGCTTATCTTG
GACGAGGTAGAGGGGTAAGAAGAAGAGGGGGGGTGGCTGACAAGGTTTAC
TTGGCTTTGAATGGAGATAGATTGAGGGGGAGGGAGGCGGTGGAGAGGTC
GAAGGAGGACCTGCTGAAGATGAGAGGGGGACTGACTTTCAATGCGCAGA
GAGCTGCAATTCAAAAAAGTCTCGTCACGAGCAGCGGCAGCAGCAGTGGC
AGTGTGGAAAAGAGGAGTCTGCAAGGAGCGAAGGAGGGAGGGAACGGGGA
AAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGCCA
AGGCGCATTTGTCTTACCCGGCATGGGGGTTGCCTGAAGTGCTCGTGCGT
TCTTACGAAGAAATGGGGGTCCACAAGCTCTTTCCCTGGCAAGTGGAATG
TTTGGAGGCGGGACAAGGGAGAGTGCTGAGGGAGGGGAGGAATCTCGTGT
ATAGTGCCCCAACGAGTGGGGGAAAGACGCTGGTGGCCGAGTTGTTAATG
GTGCGGGCCTTGACCCATGCGGTGGAGAGTGGGACCGCGATGTTCGTCGT
GCCCTTCATTGCGCTTGCAGAGGAAAAAGCACGGTATTTTCGACAGATCT
GGGCGGGTCTGGAGCTAGGGGTGAAAAGCTTTCATAGCGATGCGGTTGAT
TCCAGCTTGACGGAGAACGTGCACGTGGCGGTGTGTACAATCGAGAGGGC
AAACGCCCTGGTGAATCGGCTGTTGGAACGGGGAGAGTTGGGCAGGTTGA
AGGTCGTGGTGGTGGATGAACTGCATATGATTGGGGATGATAGCCGAGGC
TTTCTGATCGAGGTAATGCTGGCCAAGCTCCGGATGGCGGCCTCACTCTC
TCCCTCCCTCGCAGGAGCCGTAGGAGGGACACACATTCAAATTGTGGGTT
TGAGTGCCACTCTTCCCAATCTCACTCAAATCGCCTCTTGGTTGAATGCT
CATCTGTATATCACCAAATTCCGCCCCGTCCAACTCTCCCTCCTTCTCTG
CACGGGCAAGCACCTCGAAGAACTCAAGCCCCTCCCTCCCGCCCACCCAC
CCACCCCTCCCTCCCTCCCTACATCGTCCTGGACACGAGTTCGTGACTTG
CCTCCTTATCATTCTGATGACACCCAGGCGGTCATTCATTTGTGTTTGGA
AACGGTGTCGCTGGGACAGGGGGTCTTGATTTTTTGTAGCAACCGCGCGT
GGACAGAGCGATGTGCAAGTCAGGTGGCGAGGGCTATTTCTGTGGGTTTG
AAGGACGATCTCCTGCGGGAGAAGGTGAGGCAGGGAAGGAAAGAGCTCTT
GATACGGTTGAATCTGACCCCTGTGGGACTGTCGGCAGACTTGGAGAGTC
TCGTGCGGGAGGGAGTGGCGTTCCATCATGCGGGAGTGACGATGGAAGAG
AGGACGTTGATTGAAGAGGGTTTCAAGACAGGGATTTTGAGTGTTATCGT
CGCAACGAGTACGTTGGCGGCGGGAGTGAACCTACCGGCAAGGAGAGTGA
TTGTGCGGACCAGGAAGGGCTTTAATGGCGCGGAAATTAAGGCGTTTGAA
TTCCACCAGATGTGTGGAAGGGCGGGGAGGTACGGCATTGACGGGAGCGG
GGAAGCGATCCTCATGACGAGTGAAAAAGAATTGAGCCTCGCGCGGGCTT
TTGCGTCGAGACCACTACCGCCGATGCGAAGCGCGTTACAGACAGGGATG
GGAGGAGGGCTGGAACGAGCGTTGCTCGAGGTAGTGATGGGAAAATTGGC
GGTGGGGGAGGAGGAGGAAGAGACGGGCGAGGGGAAGGGGTGGATGGAGG
TGTTTGCACGGTGTACTTTGTTTGCCACGCAGATGGGAGAGGGAGGGGAG
GAAGCCGGGGAAGAGGGAGGGGTGATGGGGCGATTTCGAGAGGCGCTGGT
CTACTTGGTGGAGCATCGTTTTATTGAGGGACGGTCGAGTCTGAAGGGAG
AGGAGAGGGAGGAGGACAAGATGAAGATGAAGACGAATCAGGAGGAGGGG
CGGGAGCGGGAGGAGGAGGAAGAGGCAGAAAAAAATTGGAAGGAAGAGAA
AAAGGGGAGAGGCAGCGCGAAGGACGTCAGTGTCGTTTCTTTAGCAGGGC
CTCCAGCAGCAAAGCCAGGCCCGGGCTCAGGCGCAACTCCCGTCGAGCAG
GGACAGCAAGAGCAGCTATCGGCCAAACGCACACCTCTGTTAGCCCTGCG
TGGTACGCAACTGGGTGCAGCTACCTTCTTTTCCAGTATGTCTCCCTATG
ATGCCACGCTCATGCTCACGGCGCTCTCACAAGCAGCGCGTGGAGGCCTC
ATTCTCACCAGTGACTTGCATCTTCTCTACTTATGCGTACCTCCGAATCG
CACGTATTTCACCCCTGACTGGAATGATCTCGTCAGACGCTCTCAGAGGT
GGGCACCAGAAGTAGCTACAGTAGCAGCAGCAGTGGGAGTGACTGAACGA
ACGTTGGAACGACTGGCTTTGGGGGGGAGGAGTTGGCCGATGAGTCGGGA
AGGTGGGAGGGAGAAGGAGAGGGAGGAGGAGGAGGGGGTGGCGAGGCGGT
TTGTATATGGACTAATGTTGCATGAGATGCTGCAGGAGGTGCCGCTGGTG
CGGTTGGAAAGGGGGGAAGTGAACAGGGGGACGTTGCAGGCGTTGAGGAG
CGATGCCCGGATGTTTTGCGGGATGATGGGGGTGTTCTGCAAGCACTTGA
AGTGGATGGCGTTGGCCCGATTGATACAGGGGTTGAGCGTGCGACTCGAG
TATGGGGTGGGGGAGGAGTTGGTAGGGCTGTGTCGGATAGATCCGGAGCT
TATGCATGCGTTGAGGGCACGTGCCTTGTTTGATGCCGGGTTTCAAGGTG
CCGACGAGCTGGCGGTGGCAAGTGTGGAGGACGTCGCGCGGGTTTTGGTG
AAAAGTATGCCTTTTGAGGCAGAAACTAAAGGAGAGGGAGGCAGAGGAGG
AGGGGGAGGGGGGGAACGAGGACGGGCAGATCGTGTGGCGGAACGGATTG
CAGGTTTGATCGTTCGAAAGGCACGAGGGGTGGTGAGGAAGCAATTGGCG
CTGACGACTGCAGGAGCATGTGGAAAGTATGAGGAAGGATGGAGAAAGCA
GAGAGCAGAGTGTGGTAAAGACGGGGAAAGGGAATTAATAGAGGACAAGA
GAGGGAGTTTGGAAAAGCGTAACATAACGTTTTAG back to top Coding sequence (CDS) from alignment at chr21:355384..360560+
>NO21G01170.1 ID=NO21G01170.1|Name=NO21G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=4935bp|location=Sequence derived from alignment at chr21:355384..360560+ (Nannochloropsis oceanica) back to top