NO21G01150.1, NO21G01150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01150.1
Unique NameNO21G01150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1077
Alignment locationchr21:351847..353187 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:351847..353187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01150.1 vs.
Match: EWM22617.1 (cox11 cytochrome c oxidase assembly protein [Nannochloropsis gaditana])

HSP 1 Score: 418.3 bits (1074), Expect = 2.100e-113
Identity = 220/282 (78.01%), Postives = 235/282 (83.33%), Query Frame = 0 
Query:   16 HVITTGSRSWGRSPSTRSCDSRPVPPTCVCRRPLQTAFGPPKSNPSTVKSLLLQQTHKRSFSHNAARAVQARDLSEKNKRLGLYAISIVIAVTGISYASVPLYKVFCQATGFGGTTKRVDSLESVVGTAPADKVRPIKILFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPKEEVDMPVFFFVDPEMLNDPSMENVHEITLSYTFFKTDEDNEEEVQELLRKNVNYPGAVGGGHGKVGG 298
            H     SRSW    S+          TCV RRPL +A   P S  S   S   Q   +RSFS  +ARA QAR+LSEKNKRLGLYAISIVIAVTG+SYASVPLYKVFCQ TGFGGTTKR DSLESVVGTAPA+K RPIKI+FNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKP+EEVDMPVFFFVDPEMLNDPSM+NVHEITLSYTFFKTDE+NEEEVQE+LR+N N+PG+ GG H  VGG
Sbjct:   19 HFFNLRSRSWSAFSSSHIS-------TCVRRRPLPSAL--PLSRLSVHFSRAWQPC-RRSFSQKSARAAQARELSEKNKRLGLYAISIVIAVTGVSYASVPLYKVFCQTTGFGGTTKRADSLESVVGTAPAEKSRPIKIVFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNKIQCFCFDEQRLKPREEVDMPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQEILRRNPNFPGS-GGAHAVVGG 289
The following BLAST results are available for this feature:
BLAST of NO21G01150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
1002003004005006007008009001000Expect = 2.10e-113 / Id = 78.01SequenceEWM22617.1
Match NameE-valueIdentityDescription
EWM22617.12.100e-11378.01cox11 cytochrome c oxidase assembly protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01150NO21G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01150.1NO21G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01150.1.cds1NO21G01150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01150.1.cds2NO21G01150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01150.1 ID=NO21G01150.1|Name=NO21G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp
ACTCATTCACCTCAACCCTACTCAAAGACACACTAAAGTATAGGAACTAT
AGGAAGGACATGATCACCCTAGGACGGATGGCATCACGGCCATGGCAGCA
GCAACATGTTATCACCACCGGCAGCAGAAGTTGGGGCCGGAGCCCCAGCA
CCAGGAGCTGTGACAGCCGCCCCGTCCCACCGACATGCGTCTGTCGGAGA
CCTCTCCAGACGGCCTTCGGCCCCCCCAAATCAAACCCTTCTACGGTGAA
AAGCTTACTCCTTCAGCAAACCCACAAGCGCAGCTTCAGTCATAACGCTG
CTCGCGCCGTCCAAGCACGCGACCTCTCCGAGAAGAACAAACGCCTTGGC
CTGTACGCTATTTCCATCGTCATTGCTGTCACAGGCATCAGCTATGCCTC
TGTCCCTCTCTACAAAGTTTTCTGTCAAGCCACCGGCTTCGGGGGCACGA
CCAAGCGAGTCGATTCCCTCGAGTCTGTTGTCGGGACAGCACCAGCAGAT
AAAGTCAGACCCATCAAAATTTTGTTTAATGCTGACGTGTCTGATACTAC
CCCTTGGAAATTTTATCCAACCCAACCTGACATTTTGGTGGTGCCTGGCG
AGACTGCCCTAGCGTTTTTCACCGTCAAGAACAAAACTGACAAGGCAGTG
ATTGGTGTGGCTACTTATAACGTTTTTCCGCCCAAGGCTGGCCTGTACTT
CAATAAGATTCAGTGTTTTTGCTTCGATGAGCAGAGACTTAAGCCGAAAG
AAGAGGTGGACATGCCGGTGTTTTTTTTTGTGGACCCGGAGATGTTGAAT
GACCCGAGCATGGAGAACGTGCACGAGATTACCTTGAGCTACACCTTTTT
CAAGACGGACGAGGACAATGAGGAGGAAGTGCAGGAATTGCTGAGGAAGA
ATGTGAATTATCCCGGTGCAGTGGGGGGAGGGCATGGGAAGGTGGGAGGA
CCACCCCCTCCTCCTGCTGCAGCTGCTGCTGCTTCGGCTACTGCAGTGTC
GGTGTGAGGGAAAATAGAGAACATGTAAAATGCGGGCGGTAAAAGAAATC
ACAATACAAAAATTGTCAATGCTTCTG
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protein sequence of NO21G01150.1

>NO21G01150.1-protein ID=NO21G01150.1-protein|Name=NO21G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MITLGRMASRPWQQQHVITTGSRSWGRSPSTRSCDSRPVPPTCVCRRPLQ
TAFGPPKSNPSTVKSLLLQQTHKRSFSHNAARAVQARDLSEKNKRLGLYA
ISIVIAVTGISYASVPLYKVFCQATGFGGTTKRVDSLESVVGTAPADKVR
PIKILFNADVSDTTPWKFYPTQPDILVVPGETALAFFTVKNKTDKAVIGV
ATYNVFPPKAGLYFNKIQCFCFDEQRLKPKEEVDMPVFFFVDPEMLNDPS
MENVHEITLSYTFFKTDEDNEEEVQELLRKNVNYPGAVGGGHGKVGGPPP
PPAAAAAASATAVSV*
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mRNA from alignment at chr21:351847..353187+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01150.1 ID=NO21G01150.1|Name=NO21G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at chr21:351847..353187+ (Nannochloropsis oceanica)
ACTCATTCACCTCAACCCTACTCAAAGACACACTAAAGTATAGGAACTAT
AGGAAGGACATGATCACCCTAGGACGGATGGCATCACGGCCATGGCAGCA
GCAACATGTTATCACCACCGGCAGCAGAAGTTGGGGCCGGAGCCCCAGCA
CCAGGAGCTGTGACAGCCGCCCCGTCCCACCGACATGCGTCTGTCGGAGA
CCTCTCCAGACGGCCTTCGGCCCCCCCAAATCAAACCCTTCTACGGTGAA
AAGCTTACTCCTTCAGCAAACCCACAAGCGCAGCTTCAGTCATAGTACGT
AGATAAGTGGTCAAACCTATACACCGCTATGTTTTGCGTATCCCTAGAAT
CAGACAGCAAGGGACTGGAAGGCGGCTATGACATGCCTTGCAGCACTAAC
AGTATAATCCTAGCAATTCAGATGTTATTGGCAGATTTGATCCGTACTCA
CTTTTCGTTTACGATTAACCCGTCCACTAATGCTTCAAATTTCAATTATT
ATCCCGCGTCCACCGTAATTTATGCCCTCCATTCTTCCTCAACCAACACA
CAAAACAGACGCTGCTCGCGCCGTCCAAGCACGCGACCTCTCCGAGAAGA
ACAAACGCCTTGGCCTGTACGCTATTTCCATCGTCATTGCTGTCACAGGC
ATCAGCTATGCCTCTGTCCCTCTCTACAAAGTTTTCTGTCAAGCCACCGG
CTTCGGGGGCACGACCAAGCGAGTCGATTCCCTCGAGTCTGTTGTCGGGA
CAGCACCAGCAGATAAAGTCAGACCCATCAAAATTTTGTTTAATGCTGAC
GTGTCTGATACTACCCCTTGGAAATTTTATCCAACCCAACCTGACATTTT
GGTGGTGCCTGGCGAGACTGCCCTAGCGTTTTTCACCGTCAAGAACAAAA
CTGACAAGGCAGTGATTGGTGTGGCTACTTATAACGTTTTTCCGCCCAAG
GCTGGCCTGTACTTCAATAAGATTCAGTGTTTTTGCTTCGATGAGCAGAG
ACTTAAGCCGAAAGAAGAGGTGGACATGCCGGTGTTTTTTTTTGTGGACC
CGGAGATGTTGAATGACCCGAGCATGGAGAACGTGCACGAGATTACCTTG
AGCTACACCTTTTTCAAGACGGACGAGGACAATGAGGAGGAAGTGCAGGA
ATTGCTGAGGAAGAATGTGAATTATCCCGGTGCAGTGGGGGGAGGGCATG
GGAAGGTGGGAGGACCACCCCCTCCTCCTGCTGCAGCTGCTGCTGCTTCG
GCTACTGCAGTGTCGGTGTGAGGGAAAATAGAGAACATGTAAAATGCGGG
CGGTAAAAGAAATCACAATACAAAAATTGTCAATGCTTCTG
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Coding sequence (CDS) from alignment at chr21:351847..353187+

>NO21G01150.1 ID=NO21G01150.1|Name=NO21G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr21:351847..353187+ (Nannochloropsis oceanica)
ATGATCACCCTAGGACGGATGGCATCACGGCCATGGCAGCAGCAACATGT
TATCACCACCGGCAGCAGAAGTTGGGGCCGGAGCCCCAGCACCAGGAGCT
GTGACAGCCGCCCCGTCCCACCGACATGCGTCTGTCGGAGACCTCTCCAG
ACGGCCTTCGGCCCCCCCAAATCAAACCCTTCTACGGTGAAAAGCTTACT
CCTTCAGCAAACCCACAAGCGCAGCTTCAGTCATAACGCTGCTCGCGCCG
TCCAAGCACGCGACCTCTCCGAGAAGAACAAACGCCTTGGCCTGTACGCT
ATTTCCATCGTCATTGCTGTCACAGGCATCAGCTATGCCTCTGTCCCTCT
CTACAAAGTTTTCTGTCAAGCCACCGGCTTCGGGGGCACGACCAAGCGAG
TCGATTCCCTCGAGTCTGTTGTCGGGACAGCACCAGCAGATAAAGTCAGA
CCCATCAAAATTTTGTTTAATGCTGACGTGTCTGATACTACCCCTTGGAA
ATTTTATCCAACCCAACCTGACATTTTGGTGGTGCCTGGCGAGACTGCCC
TAGCGTTTTTCACCGTCAAGAACAAAACTGACAAGGCAGTGATTGGTGTG
GCTACTTATAACGTTTTTCCGCCCAAGGCTGGCCTGTACTTCAATAAGAT
TCAGTGTTTTTGCTTCGATGAGCAGAGACTTAAGCCGAAAGAAGAGGTGG
ACATGCCGGTGTTTTTTTTTGTGGACCCGGAGATGTTGAATGACCCGAGC
ATGGAGAACGTGCACGAGATTACCTTGAGCTACACCTTTTTCAAGACGGA
CGAGGACAATGAGGAGGAAGTGCAGGAATTGCTGAGGAAGAATGTGAATT
ATCCCGGTGCAGTGGGGGGAGGGCATGGGAAGGTGGGAGGACCACCCCCT
CCTCCTGCTGCAGCTGCTGCTGCTTCGGCTACTGCAGTGTCGGTGTGA
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Synonyms
Publications