NO21G01140.1, NO21G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01140.1
Unique NameNO21G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr21:350489..351846 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:350489..351846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G01140.1 vs.
Match: EWM22618.1 (EAP30 family protein [Nannochloropsis gaditana])

HSP 1 Score: 358.2 bits (918), Expect = 2.100e-95
Identity = 182/260 (70.00%), Postives = 213/260 (81.92%), Query Frame = 0 
Query:    1 MRRGVGVKYIKRKEIVTEAFTTLGKELQEENIQHVASLMATFKDSLEDFARKYKKDINANPVLRAEFHKMCTSIGVDPLASNKGLWTQLLGVGDFYYELAVQVIEICLITRPLNGGLISLPDLTQRVRVRRKLDQISQDDIKTAIRKVHLLGAGFSVLKSGRTILVVSVPLELSSDHSTILEVAQGKASHVSMSQIITQLKWEEQRVKIALDLMMQGGMVWVDEQGGKEGGTEGEPVYWFPSLWQ----QERMEEAEGEG 257
            MRRG GVK IKRKE V EAFT+LGKELQEENI HV  LMATFK+SLEDFARK+KKDINANPVLRAEF+KMC  IGVDPLASNKG W QLLGVGDFYYELAVQ+IEICL TR LNGGLI L DLTQRV+ RRK+D+IS +DIK AI KVHLLGAGFS+L+SG+T LVVSVP ELSSDH+ IL++AQ   SHV++ +++ +L+W E+RV++ALDLMMQ GM W+D QG  +G  E   VYWFPSLW+    Q + +   G+G
Sbjct:    1 MRRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRRKVDKISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGA-DGSRE---VYWFPSLWEEGLCQTQRDRVTGQG 256
The following BLAST results are available for this feature:
BLAST of NO21G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22618.12.100e-9570.00EAP30 family protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01140NO21G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01140.1NO21G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01140.1.cds1NO21G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01140.1.cds2NO21G01140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01140.1 ID=NO21G01140.1|Name=NO21G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
CAACGGATTTCTTCGATGCAAGCAACAGGACTGCCTGCAGTGCCGCCTCC
CAAGCCCAAGTTGGACGGCGCACATACGCGGAGCACTAAAACAGTTGATA
AAATAGGTCCTGCCGCGTACTGCTCTATTTGACTGTGTAGCCTTGTGCGC
GTCCACACGCGCCGCCTGTAAATTAAGAAGGCATGTCATCATCTCGGGGC
GGCGATGCTCCTCACTTGCCCATCCCATCCTCTACAAAAGTGCGCACAAC
TCATGCATCCTCATCCCTCTACCCGGCACATTTTAAAAGGGCATCCTTTC
CCAATCAAGCAGCAGTGTCATCATGCGTCGCGGGGTGGGCGTCAAGTATA
TCAAGAGGAAGGAGATCGTAACGGAGGCATTCACCACCCTCGGCAAGGAG
CTGCAAGAGGAAAACATCCAGCACGTCGCCAGCCTCATGGCCACCTTCAA
GGATTCCTTGGAAGATTTTGCTCGAAAATATAAGAAAGATATCAATGCCA
ATCCGGTCCTGCGCGCGGAGTTCCACAAAATGTGCACCAGTATTGGCGTC
GACCCCCTCGCCTCCAACAAGGGCCTCTGGACTCAACTTTTGGGAGTTGG
GGACTTCTACTATGAACTCGCCGTCCAAGTTATCGAAATATGCCTCATTA
CCCGACCATTGAACGGAGGTCTCATTTCCCTTCCGGACCTGACCCAGCGC
GTGCGAGTCCGGCGGAAACTCGACCAGATCTCCCAGGACGACATCAAAAC
TGCCATACGCAAGGTTCACCTATTGGGGGCAGGATTTTCCGTTCTTAAAT
CTGGAAGGACAATCTTGGTCGTTTCCGTTCCGTTGGAACTCTCCTCGGAT
CATTCGACCATTCTTGAGGTAGCACAAGGCAAAGCTTCGCATGTGTCTAT
GTCCCAAATTATCACTCAATTAAAGTGGGAGGAACAACGAGTTAAGATCG
CCCTGGATCTGATGATGCAGGGAGGGATGGTTTGGGTCGACGAACAGGGA
GGGAAGGAAGGAGGGACGGAGGGGGAGCCGGTGTATTGGTTTCCATCGTT
GTGGCAGCAGGAGCGGATGGAGGAGGCGGAAGGGGAAGGGGAGTAGAAGG
AAGGGGGAAAAGAGAGAAATTGTTTGAAAAATAGAAAGTCCAAATGTGTA
CATACAGATGCTAT
back to top

protein sequence of NO21G01140.1

>NO21G01140.1-protein ID=NO21G01140.1-protein|Name=NO21G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MRRGVGVKYIKRKEIVTEAFTTLGKELQEENIQHVASLMATFKDSLEDFA
RKYKKDINANPVLRAEFHKMCTSIGVDPLASNKGLWTQLLGVGDFYYELA
VQVIEICLITRPLNGGLISLPDLTQRVRVRRKLDQISQDDIKTAIRKVHL
LGAGFSVLKSGRTILVVSVPLELSSDHSTILEVAQGKASHVSMSQIITQL
KWEEQRVKIALDLMMQGGMVWVDEQGGKEGGTEGEPVYWFPSLWQQERME
EAEGEGE*
back to top

mRNA from alignment at chr21:350489..351846-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01140.1 ID=NO21G01140.1|Name=NO21G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp|location=Sequence derived from alignment at chr21:350489..351846- (Nannochloropsis oceanica)
CAACGGATTTCTTCGATGCAAGCAACAGGACTGCCTGCAGTGCCGCCTCC
CAAGCCCAAGTTGGACGGCGCACATACGCGGAGCACTAAAACAGTTGATA
AAATAGGTCCTGCCGCGTACTGCTCTATTTGACTGTGTAGCCTTGTGCGC
GTCCACACGCGCCGCCTGTAAATTAAGAAGGCATGTCATCATCTCGGGGC
GGCGATGCTCCTCACTTGCCCATCCCATCCTCTACAAAAGTGCGCACAAC
TCATGCATCCTCATCCCTCTACCCGGCACATTTTAAAAGGGCATCCTTTC
CCAATCAAGCAGCAGTGTCATCATGCGTCGCGGGGTGGGCGTCAAGTATA
TCAAGAGGAAGGAGATCGTAACGGAGGCATTCACCACCCTCGGCAAGGAG
CTGCAAGAGGAAAACATCCAGCACGTCGCCAGCCTCATGGCCACCTTCAA
GGATTCCTTGGAAGATTTTGCTCGAAAATATAAGAAAGATATCAATGCCA
ATCCGGTCCTGCGCGCGGAGGTACGAGGGAGTGTGCTGGGGTAAAAAAGG
GAAGGAGGAGAGGGGAGGCCAACGCCCGTATGTTTGCACATCTTTAAGGC
ACACTTTCACCTGGTGCTTTTCAACAAAACTGCACACCTAAACCTTGGCA
TCCTCTTAGTATCATTGCTTATCTTTTTATACCTTTTTCTCTCCCTCGCT
ACCTCCATTCCTAGTTCCACAAAATGTGCACCAGTATTGGCGTCGACCCC
CTCGCCTCCAACAAGGGCCTCTGGACTCAACTTTTGGGAGTTGGGGACTT
CTACTATGAACTCGCCGTCCAAGTTATCGAAATATGCCTCATTACCCGAC
CATTGAACGGAGGTCTCATTTCCCTTCCGGACCTGACCCAGCGCGTGCGA
GTCCGGCGGAAACTCGACCAGATCTCCCAGGACGACATCAAAACTGCCAT
ACGCAAGGTTCACCTATTGGGGGCAGGATTTTCCGTTCTTAAATCTGGAA
GGACAATCTTGGTCGTTTCCGTTCCGTTGGAACTCTCCTCGGATCATTCG
ACCATTCTTGAGGTAGCACAAGGCAAAGCTTCGCATGTGTCTATGTCCCA
AATTATCACTCAATTAAAGTGGGAGGAACAACGAGTTAAGATCGCCCTGG
ATCTGATGATGCAGGGAGGGATGGTTTGGGTCGACGAACAGGGAGGGAAG
GAAGGAGGGACGGAGGGGGAGCCGGTGTATTGGTTTCCATCGTTGTGGCA
GCAGGAGCGGATGGAGGAGGCGGAAGGGGAAGGGGAGTAGAAGGAAGGGG
GAAAAGAGAGAAATTGTTTGAAAAATAGAAAGTCCAAATGTGTACATACA
GATGCTAT
back to top

Coding sequence (CDS) from alignment at chr21:350489..351846-

>NO21G01140.1 ID=NO21G01140.1|Name=NO21G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr21:350489..351846- (Nannochloropsis oceanica)
ATGCGTCGCGGGGTGGGCGTCAAGTATATCAAGAGGAAGGAGATCGTAAC
GGAGGCATTCACCACCCTCGGCAAGGAGCTGCAAGAGGAAAACATCCAGC
ACGTCGCCAGCCTCATGGCCACCTTCAAGGATTCCTTGGAAGATTTTGCT
CGAAAATATAAGAAAGATATCAATGCCAATCCGGTCCTGCGCGCGGAGTT
CCACAAAATGTGCACCAGTATTGGCGTCGACCCCCTCGCCTCCAACAAGG
GCCTCTGGACTCAACTTTTGGGAGTTGGGGACTTCTACTATGAACTCGCC
GTCCAAGTTATCGAAATATGCCTCATTACCCGACCATTGAACGGAGGTCT
CATTTCCCTTCCGGACCTGACCCAGCGCGTGCGAGTCCGGCGGAAACTCG
ACCAGATCTCCCAGGACGACATCAAAACTGCCATACGCAAGGTTCACCTA
TTGGGGGCAGGATTTTCCGTTCTTAAATCTGGAAGGACAATCTTGGTCGT
TTCCGTTCCGTTGGAACTCTCCTCGGATCATTCGACCATTCTTGAGGTAG
CACAAGGCAAAGCTTCGCATGTGTCTATGTCCCAAATTATCACTCAATTA
AAGTGGGAGGAACAACGAGTTAAGATCGCCCTGGATCTGATGATGCAGGG
AGGGATGGTTTGGGTCGACGAACAGGGAGGGAAGGAAGGAGGGACGGAGG
GGGAGCCGGTGTATTGGTTTCCATCGTTGTGGCAGCAGGAGCGGATGGAG
GAGGCGGAAGGGGAAGGGGAGTAG
back to top
Synonyms
Publications