Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:344812..347786 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01110.1 vs.
Match: CBJ29049.1 (conserved unknown protein [Ectocarpus siliculosus])
HSP 1 Score: 104.8 bits (260), Expect = 1.400e-18
Identity = 124/399 (31.08%), Postives = 189/399 (47.37%), Query Frame = 0
Query: 190 GRPHTAESRAKISAANKGKRPWNKGIGHSEETKARIRLRTKEAMEAKKRERIAKMGMTVDEFEARKAAEAAAEKERKREAKRNVTQSPDYKARMSQRMRDRWQDPAYREKALKHL-NMSRSMQTEETRAKISATMKQIWQDERYSR---NRTITPDTRKKISDKLKEMYADPEYR-SKLSTTRRRDPEHNRKIAEAIRRKWAENDEYKNKTLSGIQEYQQQYQEARGEGGELVDGVYVGGIRKRNTTAATAASVRARAARAAAGGTRGGSVRRMSAAKRKALIREELQELERMDKEMRGEIRPRKGKGVGILGGGEGGGRKKSSVVSGSVREGLEASDGSSRSSVAEAATAVTE-----------ATAASSVEGGVVTVVSVEGRASAAATAPPLAPTQ 573
GRPHT S+AKISAANKGK+PWN G+GHSEET+ +I + A ++ + +GMT++E+E K RK KR+ T + + + ++S R++ +WQDP+YRE+ + + N TEET+A+ISA +K W D Y N T +TR KI ++E +A+P R +L R EHN+KIA ++R KW + EYK +T +++ A GG+ K R R R GS R S + + RE + L R K+ RK V ++ + R++ + ++R EA + R ++ E A A+TE +T + + + V +A AAA A P Q
Sbjct: 33 GRPHTVASKAKISAANKGKKPWNVGVGHSEETRRKIAEGARNAARKRREKTAESLGMTLEEYEEM--------KRRKPAGKRDPTVTEETRKKISARLKAKWQDPSYRERRKQCMPNRKGVPHTEETKARISAAVKNKWNDPVYREKITNMERTEETRAKIGRIIREQWANPVTRKERLKNMAPRTEEHNQKIAASVRSKWLD-PEYKKRTSEAMRKAAHDRIIAS------------GGVPK---------PPRVRRPRVPRAPGEPGS--RASRIEGVGISREAQRNLNRWAKQ-------RKDAEVRLMRQAKKEEREREAATKLAIR---EAKAEAERIALEEEA-ALTEGLDDLEKVLMRSTIRAKKQERLEKVAKAAAKAKAAAAAKEEQPAQ 388
The following BLAST results are available for this feature:
BLAST of NO21G01110.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 1.40e-18 / Id = 31.08 Sequence CBJ29049.1
Match Name E-value Identity Description
CBJ29049.1 1.400e-18 31.08 conserved unknown protein [Ectocarpus siliculosus] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01110.1 ID=NO21G01110.1|Name=NO21G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2799bp back to top protein sequence of NO21G01110.1
>NO21G01110.1-protein ID=NO21G01110.1-protein|Name=NO21G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=872bp back to top mRNA from alignment at chr21:344812..347786-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01110.1 ID=NO21G01110.1|Name=NO21G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2975bp|location=Sequence derived from alignment at chr21:344812..347786- (Nannochloropsis oceanica)ATGGAGAACGACGTCAC
GCTGTATCGGGGTCAGCATAACCATTCCCCCACCGACGCTGCAAGCCTGG
CTGCGGCTGGGGGACGGAGAATAGGCAGAGGTAGCGGGCGGCCACGGCCT
CAGCATGTACCTTTAATAGTAGGTCTGCTGCTCATTGTTGTCCTGCCCAC
CTGCCAGTCAGCTGGCTTGTTGCCGTCATCTTCGCCTTCCTCCTGGTGGG
GTAGAAGAGAAGCGGAGGCTGCCGATGGAAGGAAAACAGCAGCGCAATCC
AGCCCGGCCAGGAGCAGAACAGACCACAACCGCAACTCTGCCTTCCTACA
CCCTCCTTCGGCTTTGAGCAGGAAACCACCACCATCACCATTCACCTCGC
AGCAGCAGCACCACCATCAAGCAGCGTCTCTACCACAAGTATCCCTCACA
CCCTACTCGTGGCCTCCATGGCACTATCCTTCCCAGTACAACCGAAACAC
CCTCCCTCTCTTATCCACCCTCCTAACCATCACCGATGCCGACCCTACCT
CTTCGTCCTCCCCCATGTCCCCGCCATCTATCATCGACCCCATCCCTCCC
GGCCGCCCACATACCGCGGAAAGTCGGGCCAAAATATCGGCAGCCAACAA
GGGTAAACGTCCTTGGAATAAAGGGATAGGGCACTCGGAAGAAACCAAGG
CCCGGATCCGCCTGCGGACAAAAGAGGCTATGGAAGCGAAAAAACGCGAA
CGAATCGCCAAGATGGGAATGACAGTGGATGAGTTTGAAGCCCGAAAAGC
AGCGGAAGCAGCAGCGGAAAAGGAACGCAAGCGAGAAGCCAAACGCAATG
TGACCCAGTCACCTGACTACAAGGCTCGAATGTCTCAACGGATGCGTGAC
CGTTGGCAAGATCCTGCCTACAGAGAAAAGGCCCTCAAGCATCTCAACAT
GTCCCGTAGCATGCAAACTGAGGAAACCCGTGCCAAAATCTCCGCCACTA
TGAAGCAGATTTGGCAAGACGAACGCTACTCGCGCAATCGGACCATCACC
CCCGACACCCGCAAGAAAATCTCCGATAAATTAAAAGAGATGTACGCCGA
CCCTGAGTATCGCTCCAAGCTCTCCACCACTCGAAGGAGGGATCCTGAGC
ACAACCGAAAGATCGCGGAGGCCATCAGGAGGAAATGGGCCGAAAATGAT
GAGTATAAAAATAAGACTCTGTCCGGGATCCAAGAATACCAGCAGCAATA
CCAGGAGGCAAGGGGTGAGGGGGGAGAGTTAGTTGATGGGGTTTATGTAG
GCGGGATCCGCAAAAGGAATACAACGGCGGCGACGGCGGCAAGTGTGAGG
GCGAGGGCGGCCCGGGCTGCTGCTGGAGGAACGAGGGGGGGGTCCGTACG
GCGCATGTCAGCGGCGAAACGGAAGGCGTTGATAAGGGAGGAGTTACAGG
AGTTGGAGAGGATGGATAAGGAGATGAGGGGGGAGATTAGACCGAGGAAG
GGGAAGGGGGTGGGAATATTGGGAGGGGGGGAGGGAGGGGGGAGGAAGAA
GAGTAGTGTGGTCA GTGAGTTGATGGCGAAGCAAGCGAAGAGTGTCTGGG
ACTCGATTTATGGGAAGGAGGAGGAGGTGGCGGGGGAAGGAGCGATAGAG
GAAGGAGGGAGGGGGGGGGGCAGGTGATAAGGAACGGGGGACTGGAAGGA
GAGTTTGGTGCCCTGGAGGAGAGCGTGGAGTTGCCTACAGGTGGCTCCGT
CCGGGAAGGCCTGGAGGCTTCGGATGGCTCCTCCCGTTCCTCAGTAGCAG
AAGCCGCAACAGCAGTAACAGAGGCGACAGCTGCATCATCGGTTGAGGGA
GGGGTTGTAACTGTGGTTTCGGTGGAGGGAAGAGCGAGCGCAGCAGCAAC
AGCACCACCACTGGCACCAACACAAGCACCAGCAGGAGGAGTAGGAGAAG
GAGGAGGGATCGAAGAGACAAGCCACTTTGACGAGAGCAGCAACAACAAG
GAAGAACAGGAGGACAAGGGAATGGAGGATGATGAGACCAAGCACCGGGA
CGGATTAGGGTCCTCGGGGGGAAGGGTAGAGCAAGGGGAGGGAGAGGCTT
CTTCGGGAGGAGAAGGAGGGAGGGAGGAAGGGGATGAGGACGAGGAGAGT
GACTTGGAGTGGAAGAAATTCATGGAGCGGATGGCCAAGAATGATAAGGA
GGATCAAGAGCTGAAGAAGCAGAGGAAAGCCGCTCAAAAGAGATTTCTGG
AGGAGGATGTTGCGACAGATGTCTTTCGGTTGGTCGATGGGAAAGTGGCC
GTATTGCCGACCCCTCCTCTACCACCACCACCACCACCCGCAGCAGCAGA
AGCAGCGCCAACATTAGCACCAGTTGAAGATGTGCTGCTGTCAGTAGTTA
TAGAGGAGGAATTTTTCTCGTCTTCCTCCTCTTCTTCATCCCCCGCGCCC
TCTTCCTCTTCTTCATCCCCCGCGTTCTCTTCCTCTTCTTCGTCATCAGC
TCCACCACCATTACCACCACTACCAGAAGCTGAACCTTCCTCCTCCCCCT
CCTCCCCCTCCACCTCAAGTGAGACATCGATGGAATCGCTTTCCTTTCCA
TCTTCCTTCCCTCTAGAGTCTGTCTACCCCTCCACCCCTTCCTCTGCCAC
TACCATCATCACTAGCAGCAGCAGCAGCACCAGTAGCAGCAATAGCAGCG
GTACCACCGCCCCAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGACAGCAGCAGTAAAGAGAC
GCGGAGAGTCGGGGCCAAAGCCTGA back to top Coding sequence (CDS) from alignment at chr21:344812..347786-
>NO21G01110.1 ID=NO21G01110.1|Name=NO21G01110.1|organism=Nannochloropsis oceanica|type=CDS|length=2616bp|location=Sequence derived from alignment at chr21:344812..347786- (Nannochloropsis oceanica) back to top