NO21G01060.1, NO21G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01060.1
Unique NameNO21G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1020
Alignment locationchr21:333742..334761 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:333742..334761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G01060.1 vs.
Match: EWM22605.1 (solute carrier family member 27 [Nannochloropsis gaditana])

HSP 1 Score: 505.0 bits (1299), Expect = 1.800e-139
Identity = 244/339 (71.98%), Postives = 278/339 (82.01%), Query Frame = 0 
Query:    1 MGRPDTSDLSFGAVYGLSCLSACVAETVTFPLDLFKTRIQAERISKQDHASYRSYQARILDIFREAIAKENGGYMNLWRGLTPACLRHLVYSGSRLALYEYIREDILGRDADGSFPLQKAVATGMFSGAMGQFLSSPADMVKVRMQTALGRRRTSGAVTNGTCASAGLSSSSSLSSGRQSTYQAFRDIFHEGGIRGLWRGWVPNCQRAALVQLGDLTTYDCVKQMLLRESGEERWGWEWEDNARTHACASLAAGLVAAFLGTPADVVKTRCMNQKCDPVTGRGLAYRSSFHCLSAVVREEGVKALWRGCLLNWLRMAPWSLTFYMSFEHFRKMAGLNSF 340
            MG P+TS LSFG +YGLSCLSACVAETVTFPLDLFKT +QAERIS+ + A++++Y++ +L IF+EA+AKE GGYMNLWRGLTPACLRH+VYSGSRL LYE+ RED+LGRDADGSFPL KAVA GM SGA+GQF SSPAD+VKVRMQT +GRRR                  + L    +ST +AF  IF EGG+RGLWRGWVPNCQRAALVQLGDLTTYDC KQ LLR+  ++  GW  EDNARTHACASLAAGLVAAFLGTPADVVKTRCMNQ CD VTG+GL YRSSF CL +VVR+EG +ALWRGC LNWLRMAPWSL FY+SFEH R+M+GL SF
Sbjct:    1 MGNPNTSGLSFGTIYGLSCLSACVAETVTFPLDLFKTLLQAERISRGERATHQAYRSLVLSIFKEAVAKEQGGYMNLWRGLTPACLRHIVYSGSRLGLYEFWREDVLGRDADGSFPLHKAVAAGMLSGAIGQFFSSPADVVKVRMQTEVGRRR------------------AGLPPLYRSTREAFVAIFREGGLRGLWRGWVPNCQRAALVQLGDLTTYDCTKQYLLRD--QKEGGWALEDNARTHACASLAAGLVAAFLGTPADVVKTRCMNQPCDAVTGKGLLYRSSFDCLRSVVRDEGYQALWRGCFLNWLRMAPWSLAFYLSFEHLRRMSGLRSF 319
The following BLAST results are available for this feature:
BLAST of NO21G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
1002003004005006007008009001000Expect = 1.80e-139 / Id = 71.98SequenceEWM22605.1
Match NameE-valueIdentityDescription
EWM22605.11.800e-13971.98solute carrier family member 27 [Nannochloropsis g... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01060NO21G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01060.1NO21G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01060.1.cds1NO21G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01060.1 ID=NO21G01060.1|Name=NO21G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp
ATGGGACGCCCCGACACGTCCGATCTCAGCTTCGGAGCCGTCTACGGCCT
CTCATGCCTTTCAGCATGCGTTGCCGAAACGGTCACCTTCCCTTTAGACC
TCTTCAAAACGCGCATCCAAGCCGAACGAATAAGCAAGCAAGACCACGCA
TCCTATCGGTCCTACCAAGCACGCATCTTGGACATCTTTCGGGAAGCCAT
CGCAAAAGAAAATGGCGGATACATGAATCTATGGCGTGGCCTCACCCCTG
CCTGCCTCCGTCACCTAGTCTACTCCGGCTCCCGTCTCGCTCTGTATGAG
TACATTCGGGAAGACATTTTGGGTCGTGACGCCGATGGGAGCTTCCCTCT
TCAAAAGGCAGTGGCCACGGGGATGTTCTCTGGAGCAATGGGACAATTTC
TCTCCTCTCCCGCCGACATGGTGAAAGTTCGTATGCAAACAGCATTGGGC
CGACGACGTACATCAGGAGCGGTTACAAATGGGACATGCGCAAGCGCAGG
TCTCTCCTCCTCCTCTTCTTTGTCGAGTGGTCGTCAGTCGACTTATCAAG
CATTCAGAGATATCTTCCACGAGGGGGGAATAAGAGGGTTATGGCGTGGA
TGGGTGCCGAATTGCCAAAGAGCTGCCTTGGTGCAGCTAGGGGATTTGAC
GACGTATGACTGTGTTAAGCAGATGTTGTTGAGAGAAAGCGGAGAGGAGC
GATGGGGATGGGAATGGGAGGATAATGCAAGGACGCACGCTTGTGCGTCA
TTGGCTGCTGGATTGGTGGCGGCCTTTTTAGGGACGCCAGCTGATGTGGT
TAAGACGAGATGCATGAACCAAAAATGCGATCCTGTCACTGGGAGAGGGT
TGGCGTATCGATCATCGTTTCACTGCTTGAGTGCGGTGGTGAGGGAGGAA
GGGGTGAAGGCATTGTGGCGGGGCTGTTTATTGAATTGGTTGCGCATGGC
ACCTTGGTCATTGACTTTTTATATGTCGTTTGAGCATTTCAGGAAGATGG
CGGGATTGAATTCTTTCTGA
back to top

protein sequence of NO21G01060.1

>NO21G01060.1-protein ID=NO21G01060.1-protein|Name=NO21G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MGRPDTSDLSFGAVYGLSCLSACVAETVTFPLDLFKTRIQAERISKQDHA
SYRSYQARILDIFREAIAKENGGYMNLWRGLTPACLRHLVYSGSRLALYE
YIREDILGRDADGSFPLQKAVATGMFSGAMGQFLSSPADMVKVRMQTALG
RRRTSGAVTNGTCASAGLSSSSSLSSGRQSTYQAFRDIFHEGGIRGLWRG
WVPNCQRAALVQLGDLTTYDCVKQMLLRESGEERWGWEWEDNARTHACAS
LAAGLVAAFLGTPADVVKTRCMNQKCDPVTGRGLAYRSSFHCLSAVVREE
GVKALWRGCLLNWLRMAPWSLTFYMSFEHFRKMAGLNSF*
back to top

mRNA from alignment at chr21:333742..334761+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01060.1 ID=NO21G01060.1|Name=NO21G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp|location=Sequence derived from alignment at chr21:333742..334761+ (Nannochloropsis oceanica)
ATGGGACGCCCCGACACGTCCGATCTCAGCTTCGGAGCCGTCTACGGCCT
CTCATGCCTTTCAGCATGCGTTGCCGAAACGGTCACCTTCCCTTTAGACC
TCTTCAAAACGCGCATCCAAGCCGAACGAATAAGCAAGCAAGACCACGCA
TCCTATCGGTCCTACCAAGCACGCATCTTGGACATCTTTCGGGAAGCCAT
CGCAAAAGAAAATGGCGGATACATGAATCTATGGCGTGGCCTCACCCCTG
CCTGCCTCCGTCACCTAGTCTACTCCGGCTCCCGTCTCGCTCTGTATGAG
TACATTCGGGAAGACATTTTGGGTCGTGACGCCGATGGGAGCTTCCCTCT
TCAAAAGGCAGTGGCCACGGGGATGTTCTCTGGAGCAATGGGACAATTTC
TCTCCTCTCCCGCCGACATGGTGAAAGTTCGTATGCAAACAGCATTGGGC
CGACGACGTACATCAGGAGCGGTTACAAATGGGACATGCGCAAGCGCAGG
TCTCTCCTCCTCCTCTTCTTTGTCGAGTGGTCGTCAGTCGACTTATCAAG
CATTCAGAGATATCTTCCACGAGGGGGGAATAAGAGGGTTATGGCGTGGA
TGGGTGCCGAATTGCCAAAGAGCTGCCTTGGTGCAGCTAGGGGATTTGAC
GACGTATGACTGTGTTAAGCAGATGTTGTTGAGAGAAAGCGGAGAGGAGC
GATGGGGATGGGAATGGGAGGATAATGCAAGGACGCACGCTTGTGCGTCA
TTGGCTGCTGGATTGGTGGCGGCCTTTTTAGGGACGCCAGCTGATGTGGT
TAAGACGAGATGCATGAACCAAAAATGCGATCCTGTCACTGGGAGAGGGT
TGGCGTATCGATCATCGTTTCACTGCTTGAGTGCGGTGGTGAGGGAGGAA
GGGGTGAAGGCATTGTGGCGGGGCTGTTTATTGAATTGGTTGCGCATGGC
ACCTTGGTCATTGACTTTTTATATGTCGTTTGAGCATTTCAGGAAGATGG
CGGGATTGAATTCTTTCTGA
back to top

Coding sequence (CDS) from alignment at chr21:333742..334761+

>NO21G01060.1 ID=NO21G01060.1|Name=NO21G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr21:333742..334761+ (Nannochloropsis oceanica)
ATGGGACGCCCCGACACGTCCGATCTCAGCTTCGGAGCCGTCTACGGCCT
CTCATGCCTTTCAGCATGCGTTGCCGAAACGGTCACCTTCCCTTTAGACC
TCTTCAAAACGCGCATCCAAGCCGAACGAATAAGCAAGCAAGACCACGCA
TCCTATCGGTCCTACCAAGCACGCATCTTGGACATCTTTCGGGAAGCCAT
CGCAAAAGAAAATGGCGGATACATGAATCTATGGCGTGGCCTCACCCCTG
CCTGCCTCCGTCACCTAGTCTACTCCGGCTCCCGTCTCGCTCTGTATGAG
TACATTCGGGAAGACATTTTGGGTCGTGACGCCGATGGGAGCTTCCCTCT
TCAAAAGGCAGTGGCCACGGGGATGTTCTCTGGAGCAATGGGACAATTTC
TCTCCTCTCCCGCCGACATGGTGAAAGTTCGTATGCAAACAGCATTGGGC
CGACGACGTACATCAGGAGCGGTTACAAATGGGACATGCGCAAGCGCAGG
TCTCTCCTCCTCCTCTTCTTTGTCGAGTGGTCGTCAGTCGACTTATCAAG
CATTCAGAGATATCTTCCACGAGGGGGGAATAAGAGGGTTATGGCGTGGA
TGGGTGCCGAATTGCCAAAGAGCTGCCTTGGTGCAGCTAGGGGATTTGAC
GACGTATGACTGTGTTAAGCAGATGTTGTTGAGAGAAAGCGGAGAGGAGC
GATGGGGATGGGAATGGGAGGATAATGCAAGGACGCACGCTTGTGCGTCA
TTGGCTGCTGGATTGGTGGCGGCCTTTTTAGGGACGCCAGCTGATGTGGT
TAAGACGAGATGCATGAACCAAAAATGCGATCCTGTCACTGGGAGAGGGT
TGGCGTATCGATCATCGTTTCACTGCTTGAGTGCGGTGGTGAGGGAGGAA
GGGGTGAAGGCATTGTGGCGGGGCTGTTTATTGAATTGGTTGCGCATGGC
ACCTTGGTCATTGACTTTTTATATGTCGTTTGAGCATTTCAGGAAGATGG
CGGGATTGAATTCTTTCTGA
back to top
Synonyms
Publications