NO21G01020.3, NO21G01020.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO21G01020.3
Unique Name	NO21G01020.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2574
Alignment location	chr21:324095..326962 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr21	genome	chr21:324095..326962 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO21G01020.3 vs.
Match: EWM22594.1 (glutathione s-transferase omega-like protein [Nannochloropsis gaditana])

HSP 1 Score: 642.9 bits (1657), Expect = 6.200e-181
Identity = 302/386 (78.24%), Postives = 330/386 (85.49%), Query Frame = 0

Query:    2 EDKGEGRGGNGRRD---------------EEKRKGPAKFSGVRTSLSETDEQGRFVRSPSVHRNWIEPEGKYRSEADRYHLYVSLACPWSARCLMVLYLKGLDNAISISVTHPTWTRTRINDELDHHTGWVFRSSFDPPLSSPAGWGAFSCDGCIPDYINGARTIRDLYELSKDTEGKYTVPVLWDKATSTIVNNESGDIMKMLNDNFNFLAMNPTLNLKPLELAKAVDQYNLWLHENINDGVYKCGFATSQAAYEEAVEGVVGAMDHAEALLGRQRYLLGDRLTEADVRLFPTLVRFDEVYNPHFKCNRKSILKDYPNLLNYAREIFQLPGVALSVNMQHIKTHYYSSHPTLEHFAMVPAGPRFLHELYKAHDRERFPRRRVGLW 373
            E  G+GRG  GRR+                 KR GP  F G+RTSLSETDEQGRFVRSPSVHRNW+ P+ KYR + +RYHLYVSLACPWS RCLMVLYLKGLDN ISISVTHPTW RTR+NDELDHHTGWVFR+  DPP+SSPAGWG F C GCIPDY+NGART+R+LYE S+DTEGK+TVP+LWDK T TIVNNESGDI++MLND FN  AMNP LNL P EL KA+DQY  WLHE +NDGVYKCGFATSQ AYEEAVEGVVGAMDH EALLGRQRYLLGDRLTEADVRLF TLVRFDEVY PHFKC+RKSIL DYPNLLNYARE+FQLPGVALSVNMQHIKTHYY+SHPTL HFA++PAGPRFLHELYK+HDRE+FPR+RVGLW
Sbjct:  211 EGAGDGRGAEGRREGGGHAAGQANKGRDMSGKRGGPTAFRGIRTSLSETDEQGRFVRSPSVHRNWVGPQAKYRPQPNRYHLYVSLACPWSCRCLMVLYLKGLDNVISISVTHPTWARTRLNDELDHHTGWVFRAQSDPPVSSPAGWGRFPCHGCIPDYVNGARTVRELYEESRDTEGKFTVPILWDKRTGTIVNNESGDIIRMLNDQFNEWAMNPNLNLFPYELGKALDQYGDWLHETLNDGVYKCGFATSQPAYEEAVEGVVGAMDHLEALLGRQRYLLGDRLTEADVRLFQTLVRFDEVYLPHFKCSRKSILGDYPNLLNYARELFQLPGVALSVNMQHIKTHYYTSHPTLNHFALIPAGPRFLHELYKSHDREKFPRKRVGLW 596

The following BLAST results are available for this feature:

BLAST of NO21G01020.3 vs.

BLAST of NO21G01020.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22594.1	6.200e-181	78.24	glutathione s-transferase omega-like protein [Nann...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G01020	NO21G01020	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO21G01020.3	NO21G01020.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO21G01020.3.cds1	NO21G01020.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G01020.3.cds2	NO21G01020.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO21G01020.3.cds3	NO21G01020.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr21:324095..326962+
coding sequence from alignment at chr21:324095..326962+

mRNA sequence

>NO21G01020.3 ID=NO21G01020.3|Name=NO21G01020.3|organism=Nannochloropsis oceanica|type=mRNA|length=2574bp
ACAGGTTGTCGGTGTTGCTCTCGTGTTTCAGGCGGAATTTTCATTTTTTG
CTGTCACGCCGTGGTCCAGTGGCGCTCTCTCCTAACCCTCGCCTCGAACC
CGTCGCTTGAAGTAAGCTCAGCAGCTCCTCAACCCACACAAACGTCAACA
CTACCTATCCCACGCTTTCCATCACGCTGCCGTCAAAATAGGGTCGCTGA
CCATTCCATGTCCTCTCCTATGGTAATGCGACTGTCGCGCCCGGCTCTCC
GTCCCTCCCATTTGTGCCTCGCCCTGTGCATCTTACTCGATCCCCTCAAC
GCCTTCAACCCGCAGTTGCCCTCGTCGTCTTTTCACCGGACCATTAAAGG
GAACACTGCTTTCCCCTCTTCTAATTCTCCTCATTCTTTTGCGTCTCCAG
CTGCTGCTGCTGTAACATGCATGCGCCCATGTCGTCGTCACGTCCTTATC
ATGGACGCTGCCAGTGCAGGAGGCTGGCCCCCATATCACGGCGACAACGA
CGACAGCAGTAGCAGCAGCGGGGGCAGCGGTGGGCAGGGCAGCAACAGTG
GTGGAAGTGAATTCGGTGGGATTGGGAGTAGTAGTGGCATTTCATCCTCC
CCTTCTTCTGCCGCCAATGTGCCTGCGTCATTTCCTCCTCCCCCCTCGTC
TTTTTTTAACCCTGACTTTGAGGATGATGACCAGCACGTTGGTACCCACA
ACAGCGAGGACAGCGATAGTGATAGTGCCAGCAGTAGCACTAGTAGCACC
AGGATTGACGGTAGCTGCACCCTGGGGAAAAGAGTTCCTTGGATCGAGGT
AAGTGAAGGGTGGAGGGACGGAGGAAGGGACGGATGCATGGCATGTGCTG
CGTTTGCGGGTTGTGAGTTATCTTGGTGTAAAGACACGGTACTACTCCCT
TCCCTCCTTTTGGTATCATGAATTATGATGCCTTCATCCTCTCTCCCTCC
TTCACCCTCCTTCCCTTTACCCTACCTACCCACTCATTCCCAAAAAATAG
GGCCGCGCGACTTCCGAAGCCCAAGGCTCCCTCTCTGCCAACACTCGCCG
CCGCGCGCGTCTCCACAGCCACCGACATGGAGGGATGGAGGACAAGGGTG
AAGGAAGAGGGGGGAATGGTAGGAGGGATGAAGAGAAGAGAAAGGGGCCT
GCGAAATTTAGTGGGGTTAGGACGTCGCTCAGCGAGACGGATGAACAGGG
GAGGTTTGTCCGCAGTCCGAGCGTGCATAGGAACTGGATAGAGCCCGAAG
GGAAATATCGGTCAGAGGCGGATAGGTACCATCTCTACGTGTCCTTGGCC
TGCCCCTGGTCGGCTCGGTGTTTGATGGTGCTTTATTTGAAAGGCCTCGA
CAATGCCATCTCCATCAGCGTTACGCACCCCACGTGGACACGTACCCGGA
TCAACGACGAGCTGGACCACCATACGGGATGGGTTTTCCGCTCCTCCTTC
GACCCTCCCCTCTCGTCCCCCGCCGGATGGGGCGCCTTCTCGTGCGACGG
CTGCATCCCTGATTACATCAACGGGGCCAGGACAATTCGCGACTTATATG
AACTATCCAAGGATACAGAGGGGAAATACACGGTGCCCGTGCTCTGGGAC
AAGGCGACTTCCACCATTGTGAATAATGAGAGCGGGGACATCATGAAGAT
GCTGAACGACAATTTCAATTTTCTGGCGATGAATCCCACGTTGAATCTGA
AGCCCTTAGAGCTGGCGAAGGCCGTGGACCAGTACAATCTGTGGCTACAT
GAGAACATCAACGATGGCGTGTATAAGTGTGGGTTTGCCACCAGCCAGGC
CGCGTACGAGGAGGCAGTTGAGGGCGTGGTGGGGGCCATGGATCATGCGG
AGGCTTTACTTGGGCGACAGCGGTATCTGTTGGGGGATCGGTTGACAGAA
GCGGACGTTCGCTTGTTCCCGACGTTGGTGCGATTTGATGAGGTATACAA
CCCCCACTTCAAATGCAATCGCAAATCCATCCTAAAAGACTACCCCAACC
TTCTCAACTACGCTCGGGAGATCTTCCAGCTGCCGGGCGTTGCCCTCTCA
GTCAATATGCAGCACATTAAGACGCATTATTATTCCTCACACCCGACATT
GGAGCATTTTGCGATGGTCCCAGCCGGGCCTCGGTTTTTGCACGAGCTGT
ACAAGGCGCATGACCGGGAGAGATTCCCTCGGAGAAGGGTCGGGTTGTGG
TAGGGTGGGTGCGAGGGAGGGAGGATGAGAGGGAGGGGGTTGTGGGGCTA
GATCCCACATTGTGGCACATTGTGGGAGGAAAGGAGCGGGAGGGGGAAAA
GGGACGAGTAGAGCACTACGGTTATTGATATTTTCATTCAAACATTTTTG
ACTTTCCCCTCAGTCTCCGTAGTTTTTGAAAGGATTTGGCTTCGATTGCG
CACAAAAGCTGCCATCGTCGCTTGGGTTGCGAAGCCAAACAAAAAAATAT
CTTTGTAGATAGGTAGCCATTCAATTTGAAAGAAGAAAAGAAGGTGGTAT
AAATTGGCATATATATACATATATAGGTGCCCTTGGCTTGGGGGGCACAT
GACGCCTGCTTCAACTCGTTCAAC

protein sequence of NO21G01020.3

>NO21G01020.3-protein ID=NO21G01020.3-protein|Name=NO21G01020.3|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MEDKGEGRGGNGRRDEEKRKGPAKFSGVRTSLSETDEQGRFVRSPSVHRN
WIEPEGKYRSEADRYHLYVSLACPWSARCLMVLYLKGLDNAISISVTHPT
WTRTRINDELDHHTGWVFRSSFDPPLSSPAGWGAFSCDGCIPDYINGART
IRDLYELSKDTEGKYTVPVLWDKATSTIVNNESGDIMKMLNDNFNFLAMN
PTLNLKPLELAKAVDQYNLWLHENINDGVYKCGFATSQAAYEEAVEGVVG
AMDHAEALLGRQRYLLGDRLTEADVRLFPTLVRFDEVYNPHFKCNRKSIL
KDYPNLLNYAREIFQLPGVALSVNMQHIKTHYYSSHPTLEHFAMVPAGPR
FLHELYKAHDRERFPRRRVGLW*

mRNA from alignment at chr21:324095..326962+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO21G01020.3 ID=NO21G01020.3|Name=NO21G01020.3|organism=Nannochloropsis oceanica|type=mRNA|length=2868bp|location=Sequence derived from alignment at chr21:324095..326962+ (Nannochloropsis oceanica)
ACAGGTTGTCGGTGTTGCTCTCGTGTTTCAGGCGGAATTTTCATTTTTTG
CTGTCACGCCGTGGTCCAGTGGCGCTCTCTCCTAACCCTCGCCTCGAACC
CGTCGCTTGAAGTAAGCTCAGCAGCTCCTCAACCCACACAAACGTCAACA
CTACCTATCCCACGCTTTCCATCACGCTGCCGTCAAAATAGGGTCGCTGA
CCATTCCATGTCCTCTCCTATGGTAATGCGACTGTCGCGCCCGGCTCTCC
GTCCCTCCCATTTGTGCCTCGCCCTGTGCATCTTACTCGATCCCCTCAAC
GCCTTCAACCCGCAGTTGCCCTCGTCGTCTTTTCACCGGACCATTAAAGG
GAACACTGCTTTCCCCTCTTCTAATTCTCCTCATTCTTTTGCGTCTCCAG
CTGCTGCTGCTGTAACATGCATGCGCCCATGTCGTCGTCACGTCCTTATC
ATGGACGCTGCCAGTGCAGGAGGCTGGCCCCCATATCACGGCGACAACGA
CGACAGCAGTAGCAGCAGCGGGGGCAGCGGTGGGCAGGGCAGCAACAGTG
GTGGAAGTGAATTCGGTGGGATTGGGAGTAGTAGTGGCATTTCATCCTCC
CCTTCTTCTGCCGCCAATGTGCCTGCGTCATTTCCTCCTCCCCCCTCGTC
TTTTTTTAACCCTGACTTTGAGGATGATGACCAGCACGTTGGTACCCACA
ACAGCGAGGACAGCGATAGTGATAGTGCCAGCAGTAGCACTAGTAGCACC
AGGATTGACGGTAGCTGCACCCTGGGGAAAAGAGTTCCTTGGATCGAGGT
AAGTGAAGGGTGGAGGGACGGAGGAAGGGACGGATGCATGGCATGTGCTG
CGTTTGCGGGTTGTGAGTTATCTTGGTGTAAAGACACGGTACTACTCCCT
TCCCTCCTTTTGGTATCATGAATTATGATGCCTTCATCCTCTCTCCCTCC
TTCACCCTCCTTCCCTTTACCCTACCTACCCACTCATTCCCAAAAAATAG
GGCCGCGCGACTTCCGAAGCCCAAGGCTCCCTCTCTGCCAACACTCGCCG
CCGCGCGCGTCTCCACAGCCACCGACATGGAGGGATGGAGGACAAGGGTG
AAGGAAGAGGGGGGAATGGTAGGAGGGATGAAGAGAAGAGAAAGGGGCCT
GCGAAATTTAGTGGGGTTAGGACGTCGCTCAGCGAGACGGATGAACAGGG
GAGGTTTGTCCGCAGTCCGAGCGTGCATAGGAACTGGATAGAGCCCGAAG
GGAAATATCGGTCAGAGGCGGATAGGTACCATCTCTACGTGTCCTTGGCC
TGCCCCTGGTCGGCTCGGTGTTTGATGGTGCTTTATTTGAAAGGTACATG
AGGTGTTGCGCCTCCCCCCCCTCCTTTCCTCCCTCCCTTCCTTTCTCCTA
CCCTCCTACCCTCTCCTCCCTCTCATGCTTGCACATGCCCCCTCTCCCCC
TTAGGCCTCGACAATGCCATCTCCATCAGCGTTACGCACCCCACGTGGAC
ACGTACCCGGATCAACGACGAGCTGGACCACCATACGGGATGGGTTTTCC
GCTCCTCCTTCGACCCTCCCCTCTCGTCCCCCGCCGGATGGGGCGCCTTC
TCGTGCGACGGCTGCATCCCTGATTACATCAACGGGGCCAGGACAATTCG
CGACTTATATGAACTATCCAAGGATACAGAGGGGAAATACACGGTGCCCG
TGCTCTGGGACAAGGCGACTTCCACCATTGTGAATAATGAGAGCGGGGAC
ATCATGAAGATGCTGAACGACAATTTCAATTTTCTGGCGATGAATCCCAC
GTTGAATCTGAAGCCCTTAGAGCTGGCGAAGGCCGTGGACCAGTACAATC
TGTGGCTACATGAGAACATCAACGATGGCGTGTATAAGTGTGGGTTTGCC
ACCAGCCAGGCCGCGTACGAGGAGGCAGTTGAGGGCGTGGTGGGGGCCAT
GGATCATGCGGAGGCTTTACTTGGGCGACAGCGGTATCTGTTGGGGGATC
GGTTGACAGAAGCGGACGTTCGCTTGTTCCCGACGTTGGTGCGATTTGAT
GAGGTAAGCGAGGGAGGAAAGAAGGAAGGGAGTGGGAAGGTTCCAGGTTG
TGTTGTCTTATCCTTTTTTGTTTTTTGTCTTTTAACTTAGGAATGGTCAT
CATCGACCTTGAAATATCCCCGCGATTTAAGTGATAATCATCACATACCT
AAATCGATATATCCCATTTCTCTCAATTATCCACAGGTATACAACCCCCA
CTTCAAATGCAATCGCAAATCCATCCTAAAAGACTACCCCAACCTTCTCA
ACTACGCTCGGGAGATCTTCCAGCTGCCGGGCGTTGCCCTCTCAGTCAAT
ATGCAGCACATTAAGACGCATTATTATTCCTCACACCCGACATTGGAGCA
TTTTGCGATGGTCCCAGCCGGGCCTCGGTTTTTGCACGAGCTGTACAAGG
CGCATGACCGGGAGAGATTCCCTCGGAGAAGGGTCGGGTTGTGGTAGGGT
GGGTGCGAGGGAGGGAGGATGAGAGGGAGGGGGTTGTGGGGCTAGATCCC
ACATTGTGGCACATTGTGGGAGGAAAGGAGCGGGAGGGGGAAAAGGGACG
AGTAGAGCACTACGGTTATTGATATTTTCATTCAAACATTTTTGACTTTC
CCCTCAGTCTCCGTAGTTTTTGAAAGGATTTGGCTTCGATTGCGCACAAA
AGCTGCCATCGTCGCTTGGGTTGCGAAGCCAAACAAAAAAATATCTTTGT
AGATAGGTAGCCATTCAATTTGAAAGAAGAAAAGAAGGTGGTATAAATTG
GCATATATATACATATATAGGTGCCCTTGGCTTGGGGGGCACATGACGCC
TGCTTCAACTCGTTCAAC

Coding sequence (CDS) from alignment at chr21:324095..326962+

>NO21G01020.3 ID=NO21G01020.3|Name=NO21G01020.3|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at chr21:324095..326962+ (Nannochloropsis oceanica)
ATGGAGGACAAGGGTGAAGGAAGAGGGGGGAATGGTAGGAGGGATGAAGA
GAAGAGAAAGGGGCCTGCGAAATTTAGTGGGGTTAGGACGTCGCTCAGCG
AGACGGATGAACAGGGGAGGTTTGTCCGCAGTCCGAGCGTGCATAGGAAC
TGGATAGAGCCCGAAGGGAAATATCGGTCAGAGGCGGATAGGTACCATCT
CTACGTGTCCTTGGCCTGCCCCTGGTCGGCTCGGTGTTTGATGGTGCTTT
ATTTGAAAGGCCTCGACAATGCCATCTCCATCAGCGTTACGCACCCCACG
TGGACACGTACCCGGATCAACGACGAGCTGGACCACCATACGGGATGGGT
TTTCCGCTCCTCCTTCGACCCTCCCCTCTCGTCCCCCGCCGGATGGGGCG
CCTTCTCGTGCGACGGCTGCATCCCTGATTACATCAACGGGGCCAGGACA
ATTCGCGACTTATATGAACTATCCAAGGATACAGAGGGGAAATACACGGT
GCCCGTGCTCTGGGACAAGGCGACTTCCACCATTGTGAATAATGAGAGCG
GGGACATCATGAAGATGCTGAACGACAATTTCAATTTTCTGGCGATGAAT
CCCACGTTGAATCTGAAGCCCTTAGAGCTGGCGAAGGCCGTGGACCAGTA
CAATCTGTGGCTACATGAGAACATCAACGATGGCGTGTATAAGTGTGGGT
TTGCCACCAGCCAGGCCGCGTACGAGGAGGCAGTTGAGGGCGTGGTGGGG
GCCATGGATCATGCGGAGGCTTTACTTGGGCGACAGCGGTATCTGTTGGG
GGATCGGTTGACAGAAGCGGACGTTCGCTTGTTCCCGACGTTGGTGCGAT
TTGATGAGGTATACAACCCCCACTTCAAATGCAATCGCAAATCCATCCTA
AAAGACTACCCCAACCTTCTCAACTACGCTCGGGAGATCTTCCAGCTGCC
GGGCGTTGCCCTCTCAGTCAATATGCAGCACATTAAGACGCATTATTATT
CCTCACACCCGACATTGGAGCATTTTGCGATGGTCCCAGCCGGGCCTCGG
TTTTTGCACGAGCTGTACAAGGCGCATGACCGGGAGAGATTCCCTCGGAG
AAGGGTCGGGTTGTGGTAG

Synonyms

Publications