Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:324095..326962 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01020.2 vs.
Match: EWM22594.1 (glutathione s-transferase omega-like protein [Nannochloropsis gaditana])
HSP 1 Score: 510.4 bits (1313), Expect = 6.900e-141
Identity = 314/533 (58.91%), Postives = 348/533 (65.29%), Query Frame = 0
Query: 7 MRLSRPALRPSHLCLALCILLDPLNAFNPQLPSSSFHRTIKGN---TAFPSSNSPHSFASPAAAAVTCMRPCRRHVLIMDAASAGGWPPYHGDNDDSSSSSGGSGGQGSNSGGSEFGGIGSSSGISSSPSSAANVPASFPPPPSSFFN-------PDFEDDDQHVGTHNS--EDSDSDSASSSTSSTRIDGSCTLGKRVPWIEGRATSEAQGSLSANTRRRARLHSHRHGGMEDKGEGRGGNGRRD---------------EEKRKGPAKFSGVRTSLSETDEQGRFVRSPSVHRNWIEPEGKYRSEADRYHLYVSLACPWSARCLMVLYLKGLDNAISISVTHPTWTRTRINDELDHHTGWVFRSSFDPPLSSPAGWGAFSCDGCIPDYINGARTIRDLYELSKDTEGKYTVPVLWDKATSTIVNNESGDIMKMLNDNFNFLAMNPTLNLKPLELAKAVDQYNLWLHENINDGVYKCGFATSQAAYEEAVEGVVGAMDHAEALLGRQRYLLGDRLTEADVRLFPTLVRFDEV 513
MR AL P LCL L LL PL AF PS RT K N +AF S + ++ + RP RHVL M+A GGWP HGD DDS +G SN G SE G+ S +SS P VP FP P S PD D+ H S E D + + T T G LG RVPWIEGR A S ++ RRAR R E G+GRG GRR+ KR GP F G+RTSLSETDEQGRFVRSPSVHRNW+ P+ KYR + +RYHLYVSLACPWS RCLMVLYLKGLDN ISISVTHPTW RTR+NDELDHHTGWVFR+ DPP+SSPAGWG F C GCIPDY+NGART+R+LYE S+DTEGK+TVP+LWDK T TIVNNESGDI++MLND FN AMNP LNL P EL KA+DQY WLHE +NDGVYKCGFATSQ AYEEAVEGVVGAMDH EALLGRQRYLLGDRLTEADVRLF TLVRFDEV
Sbjct: 1 MRSRMLALGPPLLCLPL--LLQPLFAFFHVAPSYPLQRTKKINCCQSAFISLSGMSAYPKYRSLG----RPRGRHVLRMEAD--GGWPTAHGDGDDSGYHNGIPSDLSSN-GNSEVSEDGTGS-LSSPPF----VP--FPLFPFSDCGEAAMAQFPDMTDEGLHSDVEGSTHECGDGEKRTRGTDITGRGGRA-LGGRVPWIEGRLDRVA--SFLFSSHRRARQLRRR---TEGAGDGRGAEGRREGGGHAAGQANKGRDMSGKRGGPTAFRGIRTSLSETDEQGRFVRSPSVHRNWVGPQAKYRPQPNRYHLYVSLACPWSCRCLMVLYLKGLDNVISISVTHPTWARTRLNDELDHHTGWVFRAQSDPPVSSPAGWGRFPCHGCIPDYVNGARTVRELYEESRDTEGKFTVPILWDKRTGTIVNNESGDIIRMLNDQFNEWAMNPNLNLFPYELGKALDQYGDWLHETLNDGVYKCGFATSQPAYEEAVEGVVGAMDHLEALLGRQRYLLGDRLTEADVRLFQTLVRFDEV 511
The following BLAST results are available for this feature:
BLAST of NO21G01020.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 6.90e-141 / Id = 58.91 Sequence EWM22594.1
Match Name E-value Identity Description
EWM22594.1 6.900e-141 58.91 glutathione s-transferase omega-like protein [Nann... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G01020.2 ID=NO21G01020.2|Name=NO21G01020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2555bp ACAGGTTGTCGGTGTTGCTCTCGTGTTTCAGGCGGAATTTTCATTTTTTG CTGTCACGCCGTGGTCCAGTGGCGCTCTCTCCTAACCCTCGCCTCGAACC CGTCGCTTGAAGTAAGCTCAGCAGCTCCTCAACCCACACAAACGTCAACA CTACCTATCCCACGCTTTCCATCACGCTGCCGTCAAAATAGGGTCGCTGA CCATTCCATGTCCTCTCCTATGGTAATGCGACTGTCGCGCCCGGCTCTCC GTCCCTCCCATTTGTGCCTCGCCCTGTGCATCTTACTCGATCCCCTCAAC GCCTTCAACCCGCAGTTGCCCTCGTCGTCTTTTCACCGGACCATTAAAGG GAACACTGCTTTCCCCTCTTCTAATTCTCCTCATTCTTTTGCGTCTCCAG CTGCTGCTGCTGTAACATGCATGCGCCCATGTCGTCGTCACGTCCTTATC ATGGACGCTGCCAGTGCAGGAGGCTGGCCCCCATATCACGGCGACAACGA CGACAGCAGTAGCAGCAGCGGGGGCAGCGGTGGGCAGGGCAGCAACAGTG GTGGAAGTGAATTCGGTGGGATTGGGAGTAGTAGTGGCATTTCATCCTCC CCTTCTTCTGCCGCCAATGTGCCTGCGTCATTTCCTCCTCCCCCCTCGTC TTTTTTTAACCCTGACTTTGAGGATGATGACCAGCACGTTGGTACCCACA ACAGCGAGGACAGCGATAGTGATAGTGCCAGCAGTAGCACTAGTAGCACC AGGATTGACGGTAGCTGCACCCTGGGGAAAAGAGTTCCTTGGATCGAGGG CCGCGCGACTTCCGAAGCCCAAGGCTCCCTCTCTGCCAACACTCGCCGCC GCGCGCGTCTCCACAGCCACCGACATGGAGGGATGGAGGACAAGGGTGAA GGAAGAGGGGGGAATGGTAGGAGGGATGAAGAGAAGAGAAAGGGGCCTGC GAAATTTAGTGGGGTTAGGACGTCGCTCAGCGAGACGGATGAACAGGGGA GGTTTGTCCGCAGTCCGAGCGTGCATAGGAACTGGATAGAGCCCGAAGGG AAATATCGGTCAGAGGCGGATAGGTACCATCTCTACGTGTCCTTGGCCTG CCCCTGGTCGGCTCGGTGTTTGATGGTGCTTTATTTGAAAGGCCTCGACA ATGCCATCTCCATCAGCGTTACGCACCCCACGTGGACACGTACCCGGATC AACGACGAGCTGGACCACCATACGGGATGGGTTTTCCGCTCCTCCTTCGA CCCTCCCCTCTCGTCCCCCGCCGGATGGGGCGCCTTCTCGTGCGACGGCT GCATCCCTGATTACATCAACGGGGCCAGGACAATTCGCGACTTATATGAA CTATCCAAGGATACAGAGGGGAAATACACGGTGCCCGTGCTCTGGGACAA GGCGACTTCCACCATTGTGAATAATGAGAGCGGGGACATCATGAAGATGC TGAACGACAATTTCAATTTTCTGGCGATGAATCCCACGTTGAATCTGAAG CCCTTAGAGCTGGCGAAGGCCGTGGACCAGTACAATCTGTGGCTACATGA GAACATCAACGATGGCGTGTATAAGTGTGGGTTTGCCACCAGCCAGGCCG CGTACGAGGAGGCAGTTGAGGGCGTGGTGGGGGCCATGGATCATGCGGAG GCTTTACTTGGGCGACAGCGGTATCTGTTGGGGGATCGGTTGACAGAAGC GGACGTTCGCTTGTTCCCGACGTTGGTGCGATTTGATGAGGTAAGCGAGG GAGGAAAGAAGGAAGGGAGTGGGAAGGTTCCAGGTTGTGTTGTCTTATCC TTTTTTGTTTTTTGTCTTTTAACTTAGGAATGGTCATCATCGACCTTGAA ATATCCCCGCGATTTAAGTGATAATCATCACATACCTAAATCGATATATC CCATTTCTCTCAATTATCCACAGGTATACAACCCCCACTTCAAATGCAAT CGCAAATCCATCCTAAAAGACTACCCCAACCTTCTCAACTACGCTCGGGA GATCTTCCAGCTGCCGGGCGTTGCCCTCTCAGTCAATATGCAGCACATTA AGACGCATTATTATTCCTCACACCCGACATTGGAGCATTTTGCGATGGTC CCAGCCGGGCCTCGGTTTTTGCACGAGCTGTACAAGGCGCATGACCGGGA GAGATTCCCTCGGAGAAGGGTCGGGTTGTGGTAGGGTGGGTGCGAGGGAG GGAGGATGAGAGGGAGGGGGTTGTGGGGCTAGATCCCACATTGTGGCACA TTGTGGGAGGAAAGGAGCGGGAGGGGGAAAAGGGACGAGTAGAGCACTAC GGTTATTGATATTTTCATTCAAACATTTTTGACTTTCCCCTCAGTCTCCG TAGTTTTTGAAAGGATTTGGCTTCGATTGCGCACAAAAGCTGCCATCGTC GCTTGGGTTGCGAAGCCAAACAAAAAAATATCTTTGTAGATAGGTAGCCA TTCAATTTGAAAGAAGAAAAGAAGGTGGTATAAATTGGCATATATATACA TATATAGGTGCCCTTGGCTTGGGGGGCACATGACGCCTGCTTCAACTCGT TCAAC back to top protein sequence of NO21G01020.2
>NO21G01020.2-protein ID=NO21G01020.2-protein|Name=NO21G01020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp MSSPMVMRLSRPALRPSHLCLALCILLDPLNAFNPQLPSSSFHRTIKGNT AFPSSNSPHSFASPAAAAVTCMRPCRRHVLIMDAASAGGWPPYHGDNDDS SSSSGGSGGQGSNSGGSEFGGIGSSSGISSSPSSAANVPASFPPPPSSFF NPDFEDDDQHVGTHNSEDSDSDSASSSTSSTRIDGSCTLGKRVPWIEGRA TSEAQGSLSANTRRRARLHSHRHGGMEDKGEGRGGNGRRDEEKRKGPAKF SGVRTSLSETDEQGRFVRSPSVHRNWIEPEGKYRSEADRYHLYVSLACPW SARCLMVLYLKGLDNAISISVTHPTWTRTRINDELDHHTGWVFRSSFDPP LSSPAGWGAFSCDGCIPDYINGARTIRDLYELSKDTEGKYTVPVLWDKAT STIVNNESGDIMKMLNDNFNFLAMNPTLNLKPLELAKAVDQYNLWLHENI NDGVYKCGFATSQAAYEEAVEGVVGAMDHAEALLGRQRYLLGDRLTEADV RLFPTLVRFDEVSEGGKKEGSGKVPGCVVLSFFVFCLLT* back to top mRNA from alignment at chr21:324095..326962+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01020.2 ID=NO21G01020.2|Name=NO21G01020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2868bp|location=Sequence derived from alignment at chr21:324095..326962+ (Nannochloropsis oceanica) ACAGGTTGTCGGTGTTGCTCTCGTGTTTCAGGCGGAATTTTCATTTTTTG
CTGTCACGCCGTGGTCCAGTGGCGCTCTCTCCTAACCCTCGCCTCGAACC
CGTCGCTTGAAGTAAGCTCAGCAGCTCCTCAACCCACACAAACGTCAACA
CTACCTATCCCACGCTTTCCATCACGCTGCCGTCAAAATAGGGTCGCTGA
CCATTCCATGTCCTCTCCTATGGTAATGCGACTGTCGCGCCCGGCTCTCC
GTCCCTCCCATTTGTGCCTCGCCCTGTGCATCTTACTCGATCCCCTCAAC
GCCTTCAACCCGCAGTTGCCCTCGTCGTCTTTTCACCGGACCATTAAAGG
GAACACTGCTTTCCCCTCTTCTAATTCTCCTCATTCTTTTGCGTCTCCAG
CTGCTGCTGCTGTAACATGCATGCGCCCATGTCGTCGTCACGTCCTTATC
ATGGACGCTGCCAGTGCAGGAGGCTGGCCCCCATATCACGGCGACAACGA
CGACAGCAGTAGCAGCAGCGGGGGCAGCGGTGGGCAGGGCAGCAACAGTG
GTGGAAGTGAATTCGGTGGGATTGGGAGTAGTAGTGGCATTTCATCCTCC
CCTTCTTCTGCCGCCAATGTGCCTGCGTCATTTCCTCCTCCCCCCTCGTC
TTTTTTTAACCCTGACTTTGAGGATGATGACCAGCACGTTGGTACCCACA
ACAGCGAGGACAGCGATAGTGATAGTGCCAGCAGTAGCACTAGTAGCACC
AGGATTGACGGTAGCTGCACCCTGGGGAAAAGAGTTCCTTGGATCGAG GT
AAGTGAAGGGTGGAGGGACGGAGGAAGGGACGGATGCATGGCATGTGCTG
CGTTTGCGGGTTGTGAGTTATCTTGGTGTAAAGACACGGTACTACTCCCT
TCCCTCCTTTTGGTATCATGAATTATGATGCCTTCATCCTCTCTCCCTCC
TTCACCCTCCTTCCCTTTACCCTACCTACCCACTCATTCCCAAAAAATAG
GGCCGCGCGACTTCCGAAGCCCAAGGCTCCCTCTCTGCCAACACTCGCCG
CCGCGCGCGTCTCCACAGCCACCGACATGGAGGGATGGAGGACAAGGGTG
AAGGAAGAGGGGGGAATGGTAGGAGGGATGAAGAGAAGAGAAAGGGGCCT
GCGAAATTTAGTGGGGTTAGGACGTCGCTCAGCGAGACGGATGAACAGGG
GAGGTTTGTCCGCAGTCCGAGCGTGCATAGGAACTGGATAGAGCCCGAAG
GGAAATATCGGTCAGAGGCGGATAGGTACCATCTCTACGTGTCCTTGGCC
TGCCCCTGGTCGGCTCGGTGTTTGATGGTGCTTTATTTGAAAG GTACATG
AGGTGTTGCGCCTCCCCCCCCTCCTTTCCTCCCTCCCTTCCTTTCTCCTA
CCCTCCTACCCTCTCCTCCCTCTCATGCTTGCACATGCCCCCTCTCCCCC
TTAGGCCTCGACAATGCCATCTCCATCAGCGTTACGCACCCCACGTGGAC
ACGTACCCGGATCAACGACGAGCTGGACCACCATACGGGATGGGTTTTCC
GCTCCTCCTTCGACCCTCCCCTCTCGTCCCCCGCCGGATGGGGCGCCTTC
TCGTGCGACGGCTGCATCCCTGATTACATCAACGGGGCCAGGACAATTCG
CGACTTATATGAACTATCCAAGGATACAGAGGGGAAATACACGGTGCCCG
TGCTCTGGGACAAGGCGACTTCCACCATTGTGAATAATGAGAGCGGGGAC
ATCATGAAGATGCTGAACGACAATTTCAATTTTCTGGCGATGAATCCCAC
GTTGAATCTGAAGCCCTTAGAGCTGGCGAAGGCCGTGGACCAGTACAATC
TGTGGCTACATGAGAACATCAACGATGGCGTGTATAAGTGTGGGTTTGCC
ACCAGCCAGGCCGCGTACGAGGAGGCAGTTGAGGGCGTGGTGGGGGCCAT
GGATCATGCGGAGGCTTTACTTGGGCGACAGCGGTATCTGTTGGGGGATC
GGTTGACAGAAGCGGACGTTCGCTTGTTCCCGACGTTGGTGCGATTTGAT
GAGGTAAGCGAGGGAGGAAAGAAGGAAGGGAGTGGGAAGGTTCCAGGTTG
TGTTGTCTTATCCTTTTTTGTTTTTTGTCTTTTAACTTAG GAATGGTCAT
CATCGACCTTGAAATATCCCCGCGATTTAAGTGATAATCATCACATACCT
AAATCGATATATCCCATTTCTCTCAATTATCCACAGGTATACAACCCCCA
CTTCAAATGCAATCGCAAATCCATCCTAAAAGACTACCCCAACCTTCTCA
ACTACGCTCGGGAGATCTTCCAGCTGCCGGGCGTTGCCCTCTCAGTCAAT
ATGCAGCACATTAAGACGCATTATTATTCCTCACACCCGACATTGGAGCA
TTTTGCGATGGTCCCAGCCGGGCCTCGGTTTTTGCACGAGCTGTACAAGG
CGCATGACCGGGAGAGATTCCCTCGGAGAAGGGTCGGGTTGTGGTAGGGT
GGGTGCGAGGGAGGGAGGATGAGAGGGAGGGGGTTGTGGGGCTAGATCCC
ACATTGTGGCACATTGTGGGAGGAAAGGAGCGGGAGGGGGAAAAGGGACG
AGTAGAGCACTACGGTTATTGATATTTTCATTCAAACATTTTTGACTTTC
CCCTCAGTCTCCGTAGTTTTTGAAAGGATTTGGCTTCGATTGCGCACAAA
AGCTGCCATCGTCGCTTGGGTTGCGAAGCCAAACAAAAAAATATCTTTGT
AGATAGGTAGCCATTCAATTTGAAAGAAGAAAAGAAGGTGGTATAAATTG
GCATATATATACATATATAGGTGCCCTTGGCTTGGGGGGCACATGACGCC
TGCTTCAACTCGTTCAAC back to top Coding sequence (CDS) from alignment at chr21:324095..326962+
>NO21G01020.2 ID=NO21G01020.2|Name=NO21G01020.2|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr21:324095..326962+ (Nannochloropsis oceanica) ATGTCCTCTCCTATGGTAATGCGACTGTCGCGCCCGGCTCTCCGTCCCTC CCATTTGTGCCTCGCCCTGTGCATCTTACTCGATCCCCTCAACGCCTTCA ACCCGCAGTTGCCCTCGTCGTCTTTTCACCGGACCATTAAAGGGAACACT GCTTTCCCCTCTTCTAATTCTCCTCATTCTTTTGCGTCTCCAGCTGCTGC TGCTGTAACATGCATGCGCCCATGTCGTCGTCACGTCCTTATCATGGACG CTGCCAGTGCAGGAGGCTGGCCCCCATATCACGGCGACAACGACGACAGC AGTAGCAGCAGCGGGGGCAGCGGTGGGCAGGGCAGCAACAGTGGTGGAAG TGAATTCGGTGGGATTGGGAGTAGTAGTGGCATTTCATCCTCCCCTTCTT CTGCCGCCAATGTGCCTGCGTCATTTCCTCCTCCCCCCTCGTCTTTTTTT AACCCTGACTTTGAGGATGATGACCAGCACGTTGGTACCCACAACAGCGA GGACAGCGATAGTGATAGTGCCAGCAGTAGCACTAGTAGCACCAGGATTG ACGGTAGCTGCACCCTGGGGAAAAGAGTTCCTTGGATCGAGGGCCGCGCG ACTTCCGAAGCCCAAGGCTCCCTCTCTGCCAACACTCGCCGCCGCGCGCG TCTCCACAGCCACCGACATGGAGGGATGGAGGACAAGGGTGAAGGAAGAG GGGGGAATGGTAGGAGGGATGAAGAGAAGAGAAAGGGGCCTGCGAAATTT AGTGGGGTTAGGACGTCGCTCAGCGAGACGGATGAACAGGGGAGGTTTGT CCGCAGTCCGAGCGTGCATAGGAACTGGATAGAGCCCGAAGGGAAATATC GGTCAGAGGCGGATAGGTACCATCTCTACGTGTCCTTGGCCTGCCCCTGG TCGGCTCGGTGTTTGATGGTGCTTTATTTGAAAGGCCTCGACAATGCCAT CTCCATCAGCGTTACGCACCCCACGTGGACACGTACCCGGATCAACGACG AGCTGGACCACCATACGGGATGGGTTTTCCGCTCCTCCTTCGACCCTCCC CTCTCGTCCCCCGCCGGATGGGGCGCCTTCTCGTGCGACGGCTGCATCCC TGATTACATCAACGGGGCCAGGACAATTCGCGACTTATATGAACTATCCA AGGATACAGAGGGGAAATACACGGTGCCCGTGCTCTGGGACAAGGCGACT TCCACCATTGTGAATAATGAGAGCGGGGACATCATGAAGATGCTGAACGA CAATTTCAATTTTCTGGCGATGAATCCCACGTTGAATCTGAAGCCCTTAG AGCTGGCGAAGGCCGTGGACCAGTACAATCTGTGGCTACATGAGAACATC AACGATGGCGTGTATAAGTGTGGGTTTGCCACCAGCCAGGCCGCGTACGA GGAGGCAGTTGAGGGCGTGGTGGGGGCCATGGATCATGCGGAGGCTTTAC TTGGGCGACAGCGGTATCTGTTGGGGGATCGGTTGACAGAAGCGGACGTT CGCTTGTTCCCGACGTTGGTGCGATTTGATGAGGTAAGCGAGGGAGGAAA GAAGGAAGGGAGTGGGAAGGTTCCAGGTTGTGTTGTCTTATCCTTTTTTG TTTTTTGTCTTTTAACTTAG back to top