NO21G00990.1, NO21G00990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00990.1
Unique NameNO21G00990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2148
Alignment locationchr21:317749..320153 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:317749..320153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G00990.1 vs.
Match: EWM22609.1 (oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 706.1 bits (1821), Expect = 9.400e-200
Identity = 369/596 (61.91%), Postives = 444/596 (74.50%), Query Frame = 0 
Query:    1 MAEHHDDHDHGDGHRDPPSFPIQEKSAIWGLVLAFVAYFLCHSFVYVENDPTAVAEASARGQRVEWTSFDKFYSQSPIVFKQPADHAELLQILEGAVRDNHTVKVVGAGHSWTPIGLTDGVMINLDKFNKIFSIDAVHKRVTVQAGIRIRDLSAALAANKPPLALRNTGVLNRQSLAGALATGTHGTGINYQIMSADIVSLELITAAGEVLRVGRNEADAAMREVFEAATVHLGGLGVITEVTMEVVSAFSVVKRSRLMPLEEVVGGLESLAEASEHLLVWYVPYTETAQLMEANRTVRSQMISAMS---SSSSSSSSSDDNGMEAEEKQGSSLVSKLT--------RAVHSPLLLYIRPSLGVLQVRVLSAAGWFSSLFPVACIPFLNRYLVAPSLHMFAGGVSSYSFYPEGYQGIVLDDHPDQYREAEWFVPFENFPAAFADFQAFLSERKGKIGANFVVQLRVTKGDELWLSPFRRSRGSCRGSEIEGEEKGGGGGEGGRERGEGASSWYVSIATLVKGYDCEPYFKAAEDLVWIPHGAKPHWGKLHYLNYNQLSRMYGEEYERYLSVRRRLDPRDVFLNQHLRELFLERAIR 586
            M  H  DH H DGHRDPPSFPIQE  AIWG +LAF+AY+L H FVYVENDP A+A ASARG+RVEW+SFDKFY Q+P +F QP++H EL+ IL  A   N TVKVVG+GHSWTPIGLTDGVM+NLDKFNK+ SIDA  K VTVQAGIRIRDLSAALAA+ PPLALRNTGVL+RQSLAGALATGTHGTGI Y+IMSAD+V+LEL+TA G VLR  R + D AMR++FEAA +HLG LGV+TEV+MEVV AFSV+KR+RL+PL  V+  L +LA   +HLLVW++PYT  AQLME+ R   +++        S     +    +G EA   Q  SL+  LT        R+  + LLL  RP LGVLQ+R+LSAAG FSSLFPV  +PF NR +VAP+LH+FA G S   FYP G++GIVLDDHPD YREAEWF+P E+F AA   F  FL  R+GKIGANFVVQ+RVT  D+LWLSPFRR +G    S             G  +    + SW+VS+ATLVKG+D +PY +AAE  VWIP+G +PHWGKLHYL Y++LS +YGE +E+YL VRRRLDP+D+F+N HLRELF ERA+R
Sbjct:   44 MTGHAQDHHHQDGHRDPPSFPIQEGRAIWGFLLAFLAYWLSHRFVYVENDPGALARASARGERVEWSSFDKFYKQAPTLFLQPSNHEELIGILREAAASNQTVKVVGSGHSWTPIGLTDGVMLNLDKFNKVLSIDASAKTVTVQAGIRIRDLSAALAAHDPPLALRNTGVLDRQSLAGALATGTHGTGIRYKIMSADVVALELVTAGGNVLRGSRRDPDPAMRDMFEAAVLHLGALGVLTEVSMEVVEAFSVIKRNRLLPLNTVLSTLPALAAGVDHLLVWFIPYTGRAQLMESLRIPPTKVPPTHDWGDSRKHCQNFGSTSGDEASAAQSGSLMLSLTYNKVVASLRSFSASLLLASRPWLGVLQLRLLSAAGSFSSLFPVTYVPFWNRQVVAPALHLFAWGES---FYPHGHRGIVLDDHPDCYREAEWFLPLESFNAAMTAFLTFLDSRRGKIGANFVVQIRVTHADDLWLSPFRREQGPQNNSH---------DNTGQDKTMSDSISWFVSVATLVKGFDSDPYLRAAEREVWIPNGGRPHWGKLHYLAYHELSALYGEPFEKYLRVRRRLDPQDMFMNSHLRELFFERAVR 627
The following BLAST results are available for this feature:
BLAST of NO21G00990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400160018002000Expect = 9.40e-200 / Id = 61.91SequenceEWM22609.1
Match NameE-valueIdentityDescription
EWM22609.19.400e-20061.91oxidoreductase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00990NO21G00990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00990.1NO21G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00990.1.cds1NO21G00990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00990.1.cds2NO21G00990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00990.1 ID=NO21G00990.1|Name=NO21G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp
CAGGTCACAGCCCACGCACAGTCCTGCTTCTCCACGCCACCCGCCGTGGC
AACCCGCATTGCCGCATCGCGTTCTACGCCAAAACATGGCCGAGCACCAC
GATGACCACGACCACGGCGACGGGCACCGGGACCCGCCAAGCTTCCCCAT
TCAAGAAAAAAGTGCTATTTGGGGCCTCGTGCTGGCATTCGTGGCCTACT
TCCTCTGCCACAGCTTCGTCTACGTCGAGAATGACCCTACAGCCGTCGCA
GAAGCAAGTGCCCGGGGCCAGCGGGTGGAATGGACTTCCTTTGACAAGTT
CTACTCTCAAAGCCCGATCGTTTTCAAGCAACCCGCAGACCACGCGGAAC
TTTTACAGATACTGGAAGGTGCTGTCAGGGACAACCACACCGTTAAAGTG
GTGGGGGCGGGCCATAGTTGGACTCCCATCGGCTTGACCGACGGCGTCAT
GATCAACCTCGATAAATTCAACAAAATTTTTTCCATTGACGCAGTCCATA
AACGTGTCACCGTCCAGGCAGGTATTCGAATTCGTGACTTAAGCGCAGCC
CTCGCCGCAAATAAACCTCCGCTAGCACTGAGAAATACGGGGGTGCTAAA
CCGACAATCCCTCGCGGGCGCCTTGGCTACGGGCACGCATGGCACAGGTA
TCAACTATCAGATTATGTCTGCGGATATCGTATCGTTGGAGCTGATAACG
GCGGCGGGGGAAGTTCTCCGGGTGGGTCGGAATGAAGCGGACGCGGCCAT
GCGGGAGGTGTTCGAGGCCGCCACGGTGCATCTGGGAGGGCTTGGAGTCA
TCACGGAGGTAACCATGGAGGTGGTGAGTGCATTCTCAGTCGTTAAACGT
AGTCGATTGATGCCTTTGGAGGAAGTGGTGGGGGGTTTGGAGTCCTTGGC
GGAGGCGTCTGAGCATTTGCTGGTGTGGTATGTGCCTTACACCGAGACGG
CGCAACTGATGGAGGCGAATCGGACCGTGAGGAGTCAGATGATATCGGCG
ATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGACAACGGAATGGA
AGCAGAGGAGAAACAAGGGTCTTCACTCGTGTCCAAGCTGACAAGAGCCG
TCCATTCCCCTCTTCTCCTTTACATTAGACCGTCCCTTGGCGTTCTGCAG
GTCCGCGTCTTATCCGCCGCCGGCTGGTTCTCCTCCCTCTTCCCCGTCGC
CTGCATCCCCTTCCTCAATCGCTACCTCGTGGCACCTTCCCTCCACATGT
TCGCGGGGGGCGTGAGCAGCTATTCGTTCTACCCTGAGGGATACCAGGGT
ATTGTCTTGGACGACCACCCGGACCAATACCGTGAGGCCGAGTGGTTCGT
GCCTTTTGAAAACTTTCCCGCGGCTTTCGCGGACTTCCAGGCGTTTTTAT
CAGAGAGGAAAGGGAAGATCGGAGCAAATTTTGTAGTACAGCTGAGGGTT
ACGAAGGGCGATGAGTTATGGTTGAGTCCTTTTCGGAGGAGTAGGGGCAG
CTGCAGGGGCAGTGAGATCGAAGGCGAGGAGAAGGGGGGAGGGGGAGGAG
AAGGAGGAAGAGAAAGAGGAGAAGGAGCATCGTCGTGGTATGTATCGATT
GCCACGCTGGTAAAAGGCTATGATTGCGAGCCTTACTTCAAAGCAGCAGA
AGACTTGGTTTGGATCCCTCACGGGGCAAAACCTCACTGGGGGAAACTCC
ACTATCTAAATTATAACCAATTATCGCGCATGTACGGGGAAGAGTACGAG
AGGTATCTGTCGGTCCGACGGAGGCTGGACCCACGGGATGTGTTCTTGAA
CCAGCACCTCCGGGAATTGTTCTTGGAGAGGGCGATCCGATGAGGAGGGG
GAGGAGGGAGCGAGGGAGAGAGAGAAGGAGGGACGGTGTCTGTGGGAAGG
TGATGATCTGGAAAGTACCTTGTATACAAGAAGTTGAAATTTTAATGACG
AAGGATTAAATAAGATTAAGAAAACCGATTAAATTTGACTGAGAAAACCG
ATTTAATTAGGCCGACAATACCAATTAAATTAGATTGAGGAAAGCGATAA
AACTAGATAGATAGAGGGATGCAGAGGGAGAGAGAGAGGGGGGGGAGAAA
AATTCTCCCACACAACTTGAACAATGTATCGGTGGCATCAAGAATCAA
back to top

protein sequence of NO21G00990.1

>NO21G00990.1-protein ID=NO21G00990.1-protein|Name=NO21G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MAEHHDDHDHGDGHRDPPSFPIQEKSAIWGLVLAFVAYFLCHSFVYVEND
PTAVAEASARGQRVEWTSFDKFYSQSPIVFKQPADHAELLQILEGAVRDN
HTVKVVGAGHSWTPIGLTDGVMINLDKFNKIFSIDAVHKRVTVQAGIRIR
DLSAALAANKPPLALRNTGVLNRQSLAGALATGTHGTGINYQIMSADIVS
LELITAAGEVLRVGRNEADAAMREVFEAATVHLGGLGVITEVTMEVVSAF
SVVKRSRLMPLEEVVGGLESLAEASEHLLVWYVPYTETAQLMEANRTVRS
QMISAMSSSSSSSSSSDDNGMEAEEKQGSSLVSKLTRAVHSPLLLYIRPS
LGVLQVRVLSAAGWFSSLFPVACIPFLNRYLVAPSLHMFAGGVSSYSFYP
EGYQGIVLDDHPDQYREAEWFVPFENFPAAFADFQAFLSERKGKIGANFV
VQLRVTKGDELWLSPFRRSRGSCRGSEIEGEEKGGGGGEGGRERGEGASS
WYVSIATLVKGYDCEPYFKAAEDLVWIPHGAKPHWGKLHYLNYNQLSRMY
GEEYERYLSVRRRLDPRDVFLNQHLRELFLERAIR*
back to top

mRNA from alignment at chr21:317749..320153+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00990.1 ID=NO21G00990.1|Name=NO21G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2405bp|location=Sequence derived from alignment at chr21:317749..320153+ (Nannochloropsis oceanica)
CAGGTCACAGCCCACGCACAGTCCTGCTTCTCCACGCCACCCGCCGTGGC
AACCCGCATTGCCGCATCGCGTTCTACGCCAAAACATGGCCGAGCACCAC
GATGACCACGACCACGGCGACGGGCACCGGGACCCGCCAAGCTTCCCCAT
TCAAGAAAAAAGTGCTATTTGGGGCCTCGTGCTGGCATTCGTGGCCTACT
TCCTCTGCCACAGCTTCGTCTACGTCGAGAATGACCCTACAGCCGTCGCA
GAAGCAAGTGCCCGGGGCCAGCGGGTGGAATGGACTTCCTTTGACAAGTT
CTACTCTCAAAGCCCGATCGTTTTCAAGCAACCCGCAGACCACGCGGAAC
TTTTACAGATACTGGAAGGTGCTGTCAGGGACAACCACACCGTTAAAGTG
GTGGGGGCGGGCCATAGTTGGACTCCCATCGGCTTGACCGACGGCGTCAT
GATCAACCTCGATAAATTCAACAAAATTTTTTCCATTGACGCAGTCCATA
AACGTGTCACCGTCCAGGCAGGTATTCGAATTCGTGACTTAAGCGCAGCC
CTCGCCGCAAATAAACCTCCGCTAGCACTGAGAAATACGGGGGTGCTAAA
CCGACAATCCCTCGCGGGCGCCTTGGCTACGGGCACGCATGGCACAGGTA
TCAACTATCAGATTATGTCTGCGGATATCGTATCGTTGGAGCTGATAACG
GCGGCGGGGGAAGTTCTCCGGGTGGGTCGGAATGAAGCGGACGCGGCCAT
GCGGGAGGTGTTCGAGGCCGCCACGGTGCATCTGGGAGGGCTTGGAGTCA
TCACGGAGGTAACCATGGAGGTGGTGAGTGCATTCTCAGTCGTTAAACGT
AGTCGATTGATGCCTTTGGAGGAAGTGGTGGGGGGTTTGGAGTCCTTGGC
GGAGGCGTCTGAGCATTTGCTGGTGTGGTATGTGCCTTACACCGAGACGG
CGCAACTGATGGAGGCGAATCGGACCGTGAGGAGTCAGATGATATCGGCG
ATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGACAACGGAATGGA
AGCAGAGGAGAAACAAGGGTCTTCACTCGTGTCCAAGCTGACAAGAGCCG
TCCATTCCCCTCTTCTCCTTTACATTAGACCGTCCCTTGGCGTTCTGCAG
GTCCGCGTCTTATCCGCCGCCGGCTGGTTCTCCTCCCTCTTCCCCGTCGC
CTGCATCCCCTTCCTCAATCGCTACCTCGTGGCACCTTCCCTCCACATGT
TCGCGGGGGGCGTGAGCAGCTATTCGTTCTACCCTGAGGGATACCAGGGT
ATTGTCTTGGGTAGGTTCAAATCAATGGTGATGGTGCTCAAGCTCTTCCC
CCCTTCCTTCCTCCCTCTCCCCCTCCCTGTCCCCCTTTCTCGATCGAAAC
CTTTTCATACCGTCCTTCCCAGCATGCATCTGAATGATGAATGTCTGTTT
TCATCCTTCTCTCCCTTCTTCTTTTCTCCCACCACACGCCACGCAACGCC
ATTTCCTGACGTTTCTTTTCTCCCCCTCCCTCCCTCCCTTCTTCGCCCCC
TCCCTCCCTTCATCCAGACGACCACCCGGACCAATACCGTGAGGCCGAGT
GGTTCGTGCCTTTTGAAAACTTTCCCGCGGCTTTCGCGGACTTCCAGGCG
TTTTTATCAGAGAGGAAAGGGAAGATCGGAGCAAATTTTGTAGTACAGCT
GAGGGTTACGAAGGGCGATGAGTTATGGTTGAGTCCTTTTCGGAGGAGTA
GGGGCAGCTGCAGGGGCAGTGAGATCGAAGGCGAGGAGAAGGGGGGAGGG
GGAGGAGAAGGAGGAAGAGAAAGAGGAGAAGGAGCATCGTCGTGGTATGT
ATCGATTGCCACGCTGGTAAAAGGCTATGATTGCGAGCCTTACTTCAAAG
CAGCAGAAGACTTGGTTTGGATCCCTCACGGGGCAAAACCTCACTGGGGG
AAACTCCACTATCTAAATTATAACCAATTATCGCGCATGTACGGGGAAGA
GTACGAGAGGTATCTGTCGGTCCGACGGAGGCTGGACCCACGGGATGTGT
TCTTGAACCAGCACCTCCGGGAATTGTTCTTGGAGAGGGCGATCCGATGA
GGAGGGGGAGGAGGGAGCGAGGGAGAGAGAGAAGGAGGGACGGTGTCTGT
GGGAAGGTGATGATCTGGAAAGTACCTTGTATACAAGAAGTTGAAATTTT
AATGACGAAGGATTAAATAAGATTAAGAAAACCGATTAAATTTGACTGAG
AAAACCGATTTAATTAGGCCGACAATACCAATTAAATTAGATTGAGGAAA
GCGATAAAACTAGATAGATAGAGGGATGCAGAGGGAGAGAGAGAGGGGGG
GGAGAAAAATTCTCCCACACAACTTGAACAATGTATCGGTGGCATCAAGA
ATCAA
back to top

Coding sequence (CDS) from alignment at chr21:317749..320153+

>NO21G00990.1 ID=NO21G00990.1|Name=NO21G00990.1|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at chr21:317749..320153+ (Nannochloropsis oceanica)
ATGGCCGAGCACCACGATGACCACGACCACGGCGACGGGCACCGGGACCC
GCCAAGCTTCCCCATTCAAGAAAAAAGTGCTATTTGGGGCCTCGTGCTGG
CATTCGTGGCCTACTTCCTCTGCCACAGCTTCGTCTACGTCGAGAATGAC
CCTACAGCCGTCGCAGAAGCAAGTGCCCGGGGCCAGCGGGTGGAATGGAC
TTCCTTTGACAAGTTCTACTCTCAAAGCCCGATCGTTTTCAAGCAACCCG
CAGACCACGCGGAACTTTTACAGATACTGGAAGGTGCTGTCAGGGACAAC
CACACCGTTAAAGTGGTGGGGGCGGGCCATAGTTGGACTCCCATCGGCTT
GACCGACGGCGTCATGATCAACCTCGATAAATTCAACAAAATTTTTTCCA
TTGACGCAGTCCATAAACGTGTCACCGTCCAGGCAGGTATTCGAATTCGT
GACTTAAGCGCAGCCCTCGCCGCAAATAAACCTCCGCTAGCACTGAGAAA
TACGGGGGTGCTAAACCGACAATCCCTCGCGGGCGCCTTGGCTACGGGCA
CGCATGGCACAGGTATCAACTATCAGATTATGTCTGCGGATATCGTATCG
TTGGAGCTGATAACGGCGGCGGGGGAAGTTCTCCGGGTGGGTCGGAATGA
AGCGGACGCGGCCATGCGGGAGGTGTTCGAGGCCGCCACGGTGCATCTGG
GAGGGCTTGGAGTCATCACGGAGGTAACCATGGAGGTGGTGAGTGCATTC
TCAGTCGTTAAACGTAGTCGATTGATGCCTTTGGAGGAAGTGGTGGGGGG
TTTGGAGTCCTTGGCGGAGGCGTCTGAGCATTTGCTGGTGTGGTATGTGC
CTTACACCGAGACGGCGCAACTGATGGAGGCGAATCGGACCGTGAGGAGT
CAGATGATATCGGCGATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGA
CGACAACGGAATGGAAGCAGAGGAGAAACAAGGGTCTTCACTCGTGTCCA
AGCTGACAAGAGCCGTCCATTCCCCTCTTCTCCTTTACATTAGACCGTCC
CTTGGCGTTCTGCAGGTCCGCGTCTTATCCGCCGCCGGCTGGTTCTCCTC
CCTCTTCCCCGTCGCCTGCATCCCCTTCCTCAATCGCTACCTCGTGGCAC
CTTCCCTCCACATGTTCGCGGGGGGCGTGAGCAGCTATTCGTTCTACCCT
GAGGGATACCAGGGTATTGTCTTGGACGACCACCCGGACCAATACCGTGA
GGCCGAGTGGTTCGTGCCTTTTGAAAACTTTCCCGCGGCTTTCGCGGACT
TCCAGGCGTTTTTATCAGAGAGGAAAGGGAAGATCGGAGCAAATTTTGTA
GTACAGCTGAGGGTTACGAAGGGCGATGAGTTATGGTTGAGTCCTTTTCG
GAGGAGTAGGGGCAGCTGCAGGGGCAGTGAGATCGAAGGCGAGGAGAAGG
GGGGAGGGGGAGGAGAAGGAGGAAGAGAAAGAGGAGAAGGAGCATCGTCG
TGGTATGTATCGATTGCCACGCTGGTAAAAGGCTATGATTGCGAGCCTTA
CTTCAAAGCAGCAGAAGACTTGGTTTGGATCCCTCACGGGGCAAAACCTC
ACTGGGGGAAACTCCACTATCTAAATTATAACCAATTATCGCGCATGTAC
GGGGAAGAGTACGAGAGGTATCTGTCGGTCCGACGGAGGCTGGACCCACG
GGATGTGTTCTTGAACCAGCACCTCCGGGAATTGTTCTTGGAGAGGGCGA
TCCGATGA
back to top
Synonyms
Publications