Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:313570..317320 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00980.1 vs.
Match: EWM22606.1 (gtp-binding protein 1 [Nannochloropsis gaditana])
HSP 1 Score: 270.4 bits (690), Expect = 2.200e-68
Identity = 186/402 (46.27%), Postives = 226/402 (56.22%), Query Frame = 0
Query: 597 SDGKNHKKED-EGIGPLLVRSEEDLDKAMGAYMVTTTTTPAATAAA---------APPPSPSSFP-------------------SSTSSFLPIFLVSSVTGQGLSLLRQFLRFLPRSLLWAQSREDLTTEIHIDGSLDVEGVGCVLNGAIYRGRVRVGDRLLLGPEKKGGGGGEGGGEGGGEEGRRGGEFEMVVVKSMHLHWVPVREAGAGQCVTLSFDKIKGCEDEGEKKENENEDEHEEDEEGVNLAARRYGLG----RGSNSVYDKHDENDENDELLPLP--PSSKAIKSYKGCVLVSPSANPLATFEFTAEILILNDAHGPLSCNQEPSVHIYTTRQTAKLMSMDDDKIDDEGRKRIVACKGETVRARFRFLFHAEYVREGMRVVVRSGRTIAVGRVV 964
SDG+ D EG LVR E DL++A+ Y+ ++ P AA+ A P P + + LP+FLVSSVTGQGL LLR+FLR LPRS WA++RED E+HID SLDVEGVGCVL GAI RGRV VGDR+LLGP R G FEMVVV+S+HLH VPVR GAGQCVTL+F + E E E EG + + G G + + + DE L + P + K+YKG VLVSP+A P+A FEF AEI++L+D HGPLSCN EPS+HI+ TRQTAKL+S+D + G KGETV RFRFLFHAEYVR GM +VVR GRT+AVG VV
Sbjct: 654 SDGEGGSSWDKEGESCWLVRGEADLERAIRTYVSGYSSPPPGAAASRVARHSGARATEPEPGEAEGVKKDSDHTGARRAGEGGRARLAPCLPVFLVSSVTGQGLDLLRRFLRALPRSPTWAEAREDRIAEVHIDASLDVEGVGCVLAGAIDRGRVSVGDRMLLGPL------------------RESGAFEMVVVRSLHLHKVPVRSVGAGQCVTLTF-----APEAEEAICLEGLLCPESPNEGPPCSPLQGGQGVQICENAKINHGRDVAEGSVDERLFMSGVPRALTTKTYKGIVLVSPAACPVAAFEFEAEIVVLSDTHGPLSCNLEPSLHIHKTRQTAKLLSIDQGRHSSAG-------KGETVHCRFRFLFHAEYVRVGMMIVVRIGRTVAVGWVV 1025
The following BLAST results are available for this feature:
BLAST of NO21G00980.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 Expect = 2.20e-68 / Id = 46.27 Sequence EWM22606.1
Match Name E-value Identity Description
EWM22606.1 2.200e-68 46.27 gtp-binding protein 1 [Nannochloropsis gaditana] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G00980.1 ID=NO21G00980.1|Name=NO21G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=3638bp back to top protein sequence of NO21G00980.1
>NO21G00980.1-protein ID=NO21G00980.1-protein|Name=NO21G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=965bp back to top mRNA from alignment at chr21:313570..317320+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00980.1 ID=NO21G00980.1|Name=NO21G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=3751bp|location=Sequence derived from alignment at chr21:313570..317320+ (Nannochloropsis oceanica)ATGCCAA
CCGCGCAAACAGCCGCCCGTCGCGCCCCTCTTTCTCCCCCCGCCTCCACC
AGCACCAGCAGCTCCAGCACACGCAAATGCCGTTCTCGGAGCGAGGGCAC
CGATCTGTTTTCTCGTACCACCACCACAACAACTACCGCTACCACATCCT
CCTCATCTCCCTCTTTCTTAGCCATTGCCCCACATTTTGGCCATGAAATC
GAGGAAGGAAACATCGAGCATAAGTGGCGCTTGACCAACACCTCTCCCGA
GAGACTTACTCACTTGACGACCCAGCTCCACTGGCGCCTGAATGAATCGA
GCCAAGGCGAGGCCATCTATTTAATCGGTGTCCGTGATGATGGCTTTCCG
GAAGGTATATCCGAAGGCGATTTCAGAGAGTCTTTAGTGACACTCAGGCG
CATGGCGAAAGGCGTGAATGCATGTATAGTTGATGTGAAAATCTCGCGTG
GAGCGGGAACCGAGAGAGGAGGGGAAGGAAGCGAGGGAGGGATAGGGGGA
GGAGGGGCGAAGAAAGTGGCGGAGGTGAGATTGAAAAGGGAGGTGGTGGA
AGTAGTGGACTTGCACAGTGGGCACGAACATGTGCGGGTGGCGGTGTTGG
GGGGGGGAGAGGGAGGGAAGAGTACGTTGGTAGGGGTGCTGACGAAGGGG
AGGCTGGACAACGGGAGGGGCTTGGCCCGGATGCAGGTCTTGAAGCATAA
TCATGAAGTAGAGAATGGACGGACATCCAGCGTGAGTCAGCATATATTGG
GGTTTCGAGAGGATGGGAGCGTTACCAACTACAGGGTAGACGAGGGCGGT
AGTGCTGGTCCTGCTGTTGGTGGTGGGAATGGTGACTGTGCTCCTCCACC
TTCTTCTCCTCCTCTTCCTCCTCCTTCATGCTTCTCTCCTCCTCCTCCTC
CTCATTCTCTTCTTACTCCTCCTACTCTTCCTCTCTTGGTGGACAATGGC
GGCACGAGTTGCGAAGGCAACGGGCGTGGCAGGAGCTGGAGCACTGGCAG
CTGTATGAATAACAGGCCGAAAGCCACCACCTCCTCCTCCTCCTCCTCTC
CAATTCCTCAACCGTTGTCAGCGCAAGAAATCCAAGAGGCTTCATCTAAA
GTCATTTCTTTCATTGATCTAGCCGGTGATGAGAAATACCTCAAAACGAC
TCTGGCGGGCATGGTGGGCTTGTTGCCCGATCACGCGATGATCTCTCTCC
CTGCTACCACTGCCTCTGATTCCACTCTAGGAGGGAGTGAGCGTCTAGGG
GGGAGGGAGGGTACGAGAAAGGCAGGATTTGGAGAGCAGGAGGAGGAGAA
GGAGGAGCAGCAAGAGGAGGAGCCATTTGTGGGGACCTCGTCATCCGATG
TTTCGGAGGAGGACGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAACAACAGCAACAACAACAACAAGAACAGCAACAACAT
CAAGGACAACAACATCAAGGACAACAACATCAAGGACAACAACAACAACA
TCAAGGACAACAACAACAACAACAACAACAACAACAACAACAAGAGTGGC
CGTAATACTGGCCCTGTGAGAGGAAGAAAAGGCCTATCTGCTCCCACCAC
CACCACCAGCACCACCATCACCACCAGCACCACTAGCTGCAACCGCCGTA
ATAGAGGCAGCAGCAGCAGCAACAACCCGCTAGAGCATCTGAATATAGCC
CTTGCGTTAGGCGTGCCCTTGTTTGTCGTCCTCACCAAGGCAGACACGGC
GACGGAAGAGCAAATTGCGAATACT GTAAGTATGGTGCAATCTGCCCTCC
TTGCGCACCAGCTTCGTCATCGTCCCTCCTCTTCCTTCTCCTCCTCCTCC
TCCTCCTCCTCCCCCTCCCCTCTTCCTGCTCGTCAAAGAACAATAGCGAC
GGGAAGAACCACAAGAAGGAAGATGAAGGGATTGGCCCCCTGCTTGTCCG
CAGTGAGGAAGACTTAGATAAGGCGATGGGGGCGTACATGGTGACCACTA
CCACCACCCCAGCAGCAACAGCAGCAGCAGCACCACCACCATCGCCCTCC
TCTTTCCCTTCCTCCACTTCCTCCTTCCTCCCCATTTTCCTCGTCTCAAG
CGTCACTGGGCAAGGCCTTTCTCTCCTCCGCCAATTCCTCCGCTTCCTCC
CTCGGTCTCTCCTCTGGGCTCAGTCCCGCGAAGATTTGACCACAGAAATC
CACATTGATGGGTCGTTAGACGTGGAAGGCGTAGGGTGTGTGTTGAACGG
AGCGATATATAGAGGAAGAGTAAGAGTGGGCGATCGGCTTTTACTAGGGC
CGGAGAAGAAGGGAGGAGGAGGGGGAGAAGGAGGAGGAGAAGGAGGAGGA
GAGGAAGGACGAAGGGGAGGCGAGTTCGAGATGGTGGTGGTGAAAAGTAT
GCATTTGCATTGGGTGCCGGTAAGGGAGGCGGGGGCGGGGCAATGCGTGA
CTTTGAGCTTTGACAAGATAAAAGGATGTGAGGATGAGGGCGAGAAGAAG
GAGAATGAGAACGAGGACGAGCACGAGGAGGACGAGGAGGGGGTGAATTT
GGCCGCTAGGCGCTACGGCCTTGGTAGAGGTAGCAACAGCGTCTACGACA
AGCACGACGAGAATGATGAGAACGACGAACTTCTTCCGTTGCCTCCTTCA
TCCAAAGCCATTAAAAGCTACAAAGGCTGCGTCCTCGTGTCTCCTTCTGC
CAATCCCCTTGCCACCTTTGAATTTACTGCTGAAATTCTCATCTTAAACG
ATGCCCATGGTCCCTTGTCCTGCAACCAAGAACCATCCGTGCACATCTAC
ACGACCCGACAAACGGCCAAGCTGATGAGTATGGATGATGACAAGATTGA
TGACGAGGGAAGGAAGAGGATTGTGGCTTGTAAGGGTGAAACGGTGCGAG
CTCGGTTTCGCTTTCTGTTTCATGCTGAGTATGTGAGGGAGGGAATGCGG
GTGGTTGTGAGGAGCGGGCGGACGATCGCGGTGGGAAGGGTAGTCATGTG
A back to top Coding sequence (CDS) from alignment at chr21:313570..317320+
>NO21G00980.1 ID=NO21G00980.1|Name=NO21G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=2895bp|location=Sequence derived from alignment at chr21:313570..317320+ (Nannochloropsis oceanica) back to top