NO21G00970.1, NO21G00970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00970.1
Unique NameNO21G00970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1518
Alignment locationchr21:311812..313329 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:311812..313329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00970.1 vs.
Match: EWM22597.1 (Amino acid transporter, transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 679.9 bits (1753), Expect = 6.200e-192
Identity = 372/503 (73.96%), Postives = 420/503 (83.50%), Query Frame = 0 
Query:    7 RMAVFVLAVLSFVFFLAPAASSPAVSSAINSN-----KDVVQLFHKRHIRSSHHFHSLPRIPSRALLLSQIRGGGGGNSKATATIGAPPGTSTLMASIVNLAKNIIGGGMLALPAGLAAGAGTGYIPAFLLLAFSAVSSAYTFILVGRSVEATKSHSFKEAWSRTVGPSHAWIVDYAITALAFGVCIVYACFVGDTFTSLLKGAGLPEWLSSREASILGVTLTVLFPLTLLRDLSALQYSSYVGIGAVLYTVVFIALRWYDGSYAKGGRFFAAIPSYLRPRPAEFGQWKMSAGTSILFSMFSTSYMAHTNAVKYYNELEGRSVGRFTQVVGVAMGAATVIYLSAMVLGFETFGLASQGLVLNNYHVSKDMLATLGRVATAVSIIGAHPLLFSGLRDSFLNVLPPAMSTKKEAWFLSTVGLLAGATGLSLLCKDVGMIVSLVGSSLGALIVYVFPPLMFLHLLRKNKGEIKTSGAEILLLHATIVFGIVSGCYGTWVTLSGVGG 505
            R A+FVL ++S +     A  S +  SA N N     KD   +   R   SS    +LPR  SRAL    IRGGG G S+  A +  PPGTS+ +AS+VNLAKNIIGGGMLALPAGLAAGAGTGYIPA+LLLAFSAVSSAYTF+LVGRSVEAT+S SFKEAWSRTVGP+HAW+VDYAITALAF VCIVYACFVGDTFTSLLKGAGLP WLSSREASIL VT+TVLFPLTLL+DLSALQYSSYVGI AV+YTV+F+A R++DGSYAKGG FFAAI   LRPRPA FG WKMS GT+ILFSMFSTSYMAHTNAVK+YNELEGRSV RF QVV  AMG+ATVIYL+AM LGFETFGLASQGLVLNNYHVS+D+LAT+GR+ATAVSIIGAHPLLFSGLRDSFL++LPP + ++   W LST+ LL GAT +SLLCKDVG++VSLVGSSLGA IVYVFPP M+LHLLR+ K +I TS  EILLLHATI+FG+VSGC+GTWV L+G GG
Sbjct:    6 RAALFVLLLVSSLLTFVSATPSSS-RSAGNGNSPRLQKDSYIIKKSRDGASS----TLPRRKSRALFAG-IRGGGVGGSQPPAPVAPPPGTSSSVASMVNLAKNIIGGGMLALPAGLAAGAGTGYIPAYLLLAFSAVSSAYTFVLVGRSVEATRSRSFKEAWSRTVGPAHAWVVDYAITALAFAVCIVYACFVGDTFTSLLKGAGLPAWLSSREASILAVTITVLFPLTLLKDLSALQYSSYVGIAAVIYTVLFMAWRFWDGSYAKGGAFFAAIAPELRPRPAHFGPWKMSVGTAILFSMFSTSYMAHTNAVKFYNELEGRSVRRFWQVVAGAMGSATVIYLAAMTLGFETFGLASQGLVLNNYHVSQDVLATMGRIATAVSIIGAHPLLFSGLRDSFLSILPPNVVSRPSTWLLSTIVLLGGATCISLLCKDVGLLVSLVGSSLGAAIVYVFPPFMYLHLLRRRK-DIHTSRGEILLLHATILFGVVSGCFGTWVALTGGGG 501
The following BLAST results are available for this feature:
BLAST of NO21G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400Expect = 6.20e-192 / Id = 73.96SequenceEWM22597.1
Match NameE-valueIdentityDescription
EWM22597.16.200e-19273.96Amino acid transporter, transmembrane [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00970NO21G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00970.1NO21G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00970.1.cds1NO21G00970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00970.1 ID=NO21G00970.1|Name=NO21G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1518bp
ATGGCCGCGCTTCCCGTCCGCATGGCGGTCTTCGTCCTGGCTGTTCTTTC
GTTCGTCTTCTTCCTGGCGCCGGCGGCTTCTTCCCCTGCTGTTTCAAGCG
CCATCAACAGCAACAAGGACGTCGTCCAGCTCTTTCATAAGAGGCATATT
CGAAGCTCTCACCATTTTCATTCTCTGCCTCGCATCCCATCACGTGCGCT
GCTGCTATCGCAAATCCGCGGCGGTGGCGGTGGCAACAGCAAGGCTACCG
CTACCATCGGAGCTCCCCCTGGGACGAGCACATTGATGGCCTCCATCGTC
AATTTGGCCAAAAATATCATAGGAGGGGGCATGCTTGCTTTGCCTGCCGG
CCTGGCCGCAGGGGCAGGGACGGGGTATATACCCGCTTTTTTGCTGTTGG
CGTTCTCGGCGGTTAGCTCCGCGTATACGTTCATTTTGGTGGGGAGGTCG
GTAGAGGCGACAAAGTCTCATTCCTTTAAGGAGGCATGGTCGAGGACCGT
CGGACCGAGCCACGCATGGATAGTGGACTACGCGATCACCGCCTTGGCGT
TTGGGGTGTGCATTGTGTATGCGTGCTTTGTGGGGGATACCTTTACGTCT
TTGTTGAAAGGGGCAGGCCTTCCAGAGTGGCTGTCGAGTCGAGAAGCGAG
CATCCTCGGTGTGACCTTGACTGTGTTGTTTCCTTTGACGTTATTGAGAG
ATTTGAGTGCCTTGCAGTACAGTTCGTATGTGGGTATCGGTGCCGTTCTT
TACACGGTTGTGTTTATTGCCTTGAGGTGGTATGATGGGAGTTACGCCAA
GGGAGGGAGGTTCTTCGCGGCTATCCCTTCTTATTTGCGTCCTCGTCCCG
CGGAATTTGGACAGTGGAAGATGTCGGCGGGTACATCTATTCTGTTCAGC
ATGTTCTCGACCAGTTATATGGCACATACGAACGCGGTCAAATATTACAA
CGAGCTGGAGGGGAGGAGCGTCGGGAGATTCACACAGGTTGTGGGGGTGG
CGATGGGCGCGGCGACGGTGATTTATTTGAGCGCTATGGTCCTGGGCTTT
GAGACTTTCGGACTTGCAAGCCAGGGGCTGGTCTTGAACAATTATCATGT
CTCGAAAGACATGCTTGCAACACTGGGGAGGGTGGCGACGGCGGTGTCGA
TCATTGGCGCGCACCCTCTTTTATTTTCGGGCTTGAGGGACTCTTTTTTG
AATGTACTGCCGCCAGCCATGAGCACCAAGAAGGAGGCCTGGTTCCTTTC
GACAGTGGGCTTGTTGGCGGGGGCGACGGGTCTGTCGTTGCTGTGTAAAG
ACGTAGGGATGATCGTTAGTCTGGTGGGGTCGTCTCTGGGGGCTTTGATT
GTGTACGTGTTCCCCCCCTTGATGTTCCTGCATTTGTTGCGGAAGAATAA
GGGAGAGATCAAGACAAGCGGCGCAGAGATCTTGTTGTTGCATGCCACAA
TCGTGTTCGGGATTGTGAGTGGGTGTTACGGGACGTGGGTCACCTTGTCG
GGGGTGGGGGGTAAATGA
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protein sequence of NO21G00970.1

>NO21G00970.1-protein ID=NO21G00970.1-protein|Name=NO21G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=506bp
MAALPVRMAVFVLAVLSFVFFLAPAASSPAVSSAINSNKDVVQLFHKRHI
RSSHHFHSLPRIPSRALLLSQIRGGGGGNSKATATIGAPPGTSTLMASIV
NLAKNIIGGGMLALPAGLAAGAGTGYIPAFLLLAFSAVSSAYTFILVGRS
VEATKSHSFKEAWSRTVGPSHAWIVDYAITALAFGVCIVYACFVGDTFTS
LLKGAGLPEWLSSREASILGVTLTVLFPLTLLRDLSALQYSSYVGIGAVL
YTVVFIALRWYDGSYAKGGRFFAAIPSYLRPRPAEFGQWKMSAGTSILFS
MFSTSYMAHTNAVKYYNELEGRSVGRFTQVVGVAMGAATVIYLSAMVLGF
ETFGLASQGLVLNNYHVSKDMLATLGRVATAVSIIGAHPLLFSGLRDSFL
NVLPPAMSTKKEAWFLSTVGLLAGATGLSLLCKDVGMIVSLVGSSLGALI
VYVFPPLMFLHLLRKNKGEIKTSGAEILLLHATIVFGIVSGCYGTWVTLS
GVGGK*
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mRNA from alignment at chr21:311812..313329+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00970.1 ID=NO21G00970.1|Name=NO21G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1518bp|location=Sequence derived from alignment at chr21:311812..313329+ (Nannochloropsis oceanica)
ATGGCCGCGCTTCCCGTCCGCATGGCGGTCTTCGTCCTGGCTGTTCTTTC
GTTCGTCTTCTTCCTGGCGCCGGCGGCTTCTTCCCCTGCTGTTTCAAGCG
CCATCAACAGCAACAAGGACGTCGTCCAGCTCTTTCATAAGAGGCATATT
CGAAGCTCTCACCATTTTCATTCTCTGCCTCGCATCCCATCACGTGCGCT
GCTGCTATCGCAAATCCGCGGCGGTGGCGGTGGCAACAGCAAGGCTACCG
CTACCATCGGAGCTCCCCCTGGGACGAGCACATTGATGGCCTCCATCGTC
AATTTGGCCAAAAATATCATAGGAGGGGGCATGCTTGCTTTGCCTGCCGG
CCTGGCCGCAGGGGCAGGGACGGGGTATATACCCGCTTTTTTGCTGTTGG
CGTTCTCGGCGGTTAGCTCCGCGTATACGTTCATTTTGGTGGGGAGGTCG
GTAGAGGCGACAAAGTCTCATTCCTTTAAGGAGGCATGGTCGAGGACCGT
CGGACCGAGCCACGCATGGATAGTGGACTACGCGATCACCGCCTTGGCGT
TTGGGGTGTGCATTGTGTATGCGTGCTTTGTGGGGGATACCTTTACGTCT
TTGTTGAAAGGGGCAGGCCTTCCAGAGTGGCTGTCGAGTCGAGAAGCGAG
CATCCTCGGTGTGACCTTGACTGTGTTGTTTCCTTTGACGTTATTGAGAG
ATTTGAGTGCCTTGCAGTACAGTTCGTATGTGGGTATCGGTGCCGTTCTT
TACACGGTTGTGTTTATTGCCTTGAGGTGGTATGATGGGAGTTACGCCAA
GGGAGGGAGGTTCTTCGCGGCTATCCCTTCTTATTTGCGTCCTCGTCCCG
CGGAATTTGGACAGTGGAAGATGTCGGCGGGTACATCTATTCTGTTCAGC
ATGTTCTCGACCAGTTATATGGCACATACGAACGCGGTCAAATATTACAA
CGAGCTGGAGGGGAGGAGCGTCGGGAGATTCACACAGGTTGTGGGGGTGG
CGATGGGCGCGGCGACGGTGATTTATTTGAGCGCTATGGTCCTGGGCTTT
GAGACTTTCGGACTTGCAAGCCAGGGGCTGGTCTTGAACAATTATCATGT
CTCGAAAGACATGCTTGCAACACTGGGGAGGGTGGCGACGGCGGTGTCGA
TCATTGGCGCGCACCCTCTTTTATTTTCGGGCTTGAGGGACTCTTTTTTG
AATGTACTGCCGCCAGCCATGAGCACCAAGAAGGAGGCCTGGTTCCTTTC
GACAGTGGGCTTGTTGGCGGGGGCGACGGGTCTGTCGTTGCTGTGTAAAG
ACGTAGGGATGATCGTTAGTCTGGTGGGGTCGTCTCTGGGGGCTTTGATT
GTGTACGTGTTCCCCCCCTTGATGTTCCTGCATTTGTTGCGGAAGAATAA
GGGAGAGATCAAGACAAGCGGCGCAGAGATCTTGTTGTTGCATGCCACAA
TCGTGTTCGGGATTGTGAGTGGGTGTTACGGGACGTGGGTCACCTTGTCG
GGGGTGGGGGGTAAATGA
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Coding sequence (CDS) from alignment at chr21:311812..313329+

>NO21G00970.1 ID=NO21G00970.1|Name=NO21G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at chr21:311812..313329+ (Nannochloropsis oceanica)
ATGGCCGCGCTTCCCGTCCGCATGGCGGTCTTCGTCCTGGCTGTTCTTTC
GTTCGTCTTCTTCCTGGCGCCGGCGGCTTCTTCCCCTGCTGTTTCAAGCG
CCATCAACAGCAACAAGGACGTCGTCCAGCTCTTTCATAAGAGGCATATT
CGAAGCTCTCACCATTTTCATTCTCTGCCTCGCATCCCATCACGTGCGCT
GCTGCTATCGCAAATCCGCGGCGGTGGCGGTGGCAACAGCAAGGCTACCG
CTACCATCGGAGCTCCCCCTGGGACGAGCACATTGATGGCCTCCATCGTC
AATTTGGCCAAAAATATCATAGGAGGGGGCATGCTTGCTTTGCCTGCCGG
CCTGGCCGCAGGGGCAGGGACGGGGTATATACCCGCTTTTTTGCTGTTGG
CGTTCTCGGCGGTTAGCTCCGCGTATACGTTCATTTTGGTGGGGAGGTCG
GTAGAGGCGACAAAGTCTCATTCCTTTAAGGAGGCATGGTCGAGGACCGT
CGGACCGAGCCACGCATGGATAGTGGACTACGCGATCACCGCCTTGGCGT
TTGGGGTGTGCATTGTGTATGCGTGCTTTGTGGGGGATACCTTTACGTCT
TTGTTGAAAGGGGCAGGCCTTCCAGAGTGGCTGTCGAGTCGAGAAGCGAG
CATCCTCGGTGTGACCTTGACTGTGTTGTTTCCTTTGACGTTATTGAGAG
ATTTGAGTGCCTTGCAGTACAGTTCGTATGTGGGTATCGGTGCCGTTCTT
TACACGGTTGTGTTTATTGCCTTGAGGTGGTATGATGGGAGTTACGCCAA
GGGAGGGAGGTTCTTCGCGGCTATCCCTTCTTATTTGCGTCCTCGTCCCG
CGGAATTTGGACAGTGGAAGATGTCGGCGGGTACATCTATTCTGTTCAGC
ATGTTCTCGACCAGTTATATGGCACATACGAACGCGGTCAAATATTACAA
CGAGCTGGAGGGGAGGAGCGTCGGGAGATTCACACAGGTTGTGGGGGTGG
CGATGGGCGCGGCGACGGTGATTTATTTGAGCGCTATGGTCCTGGGCTTT
GAGACTTTCGGACTTGCAAGCCAGGGGCTGGTCTTGAACAATTATCATGT
CTCGAAAGACATGCTTGCAACACTGGGGAGGGTGGCGACGGCGGTGTCGA
TCATTGGCGCGCACCCTCTTTTATTTTCGGGCTTGAGGGACTCTTTTTTG
AATGTACTGCCGCCAGCCATGAGCACCAAGAAGGAGGCCTGGTTCCTTTC
GACAGTGGGCTTGTTGGCGGGGGCGACGGGTCTGTCGTTGCTGTGTAAAG
ACGTAGGGATGATCGTTAGTCTGGTGGGGTCGTCTCTGGGGGCTTTGATT
GTGTACGTGTTCCCCCCCTTGATGTTCCTGCATTTGTTGCGGAAGAATAA
GGGAGAGATCAAGACAAGCGGCGCAGAGATCTTGTTGTTGCATGCCACAA
TCGTGTTCGGGATTGTGAGTGGGTGTTACGGGACGTGGGTCACCTTGTCG
GGGGTGGGGGGTAAATGA
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Synonyms
Publications