NO21G00960.1, NO21G00960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00960.1
Unique NameNO21G00960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length822
Alignment locationchr21:310467..311288 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:310467..311288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00960.1 vs.
Match: EWM22595.1 (GNAT domain protein [Nannochloropsis gaditana])

HSP 1 Score: 215.7 bits (548), Expect = 1.800e-52
Identity = 133/271 (49.08%), Postives = 171/271 (63.10%), Query Frame = 0 
Query:    1 MHVTLGGIHEGNLAELRLLNDTTFPVRYNDKFYREVLTTLPEFTRYAYVHNKVVGAICCRVEE--EEVEEERGDDKREEQQQLSLPALLLQQQQREEGGLTRTPLT-------EVAHG-SMIRAPRR-TKRRRRLYIMTLGVQAAYRGQGIGSRLLTSVLDAATRPPQCSSNDPCDLDIEEIYLHVQTSNADAINFYSKFGFVTREIIKNYYKRIEPPDCYILSRTLGRGKNARDRKR-------------ETSTAASSTLAELATSATAA 248
            MH+T   I+  NL ELRLLNDTTFPVRYNDKFY EVLTTLP+FT+YA + N+VVGAICCR+EE  E VE +     R     L        Q+  +E       L+       +  HG  ++  P   + ++ +LYIMTLGVQAA+RG+GIGS+LLTSVL A  RPP  +        I EIYLHVQTSNADAI+FYSKFGF T+  I+NYYKRIEPPDC++LS  +  GK    R+               +S++  +TLA+LA++A++A
Sbjct:    1 MHITFTSINAANLTELRLLNDTTFPVRYNDKFYAEVLTTLPDFTKYACIQNEVVGAICCRLEEGIESVEGQCDHRTRSLVSSLQKDRPQDVQEHSKESDTKDNSLSTENILAADDIHGRQVVDIPSTPSDKQFKLYIMTLGVQAAHRGRGIGSQLLTSVLQATRRPPHANR-------IREIYLHVQTSNADAIHFYSKFGFETQSRIQNYYKRIEPPDCFVLSLLMDGGKQKHTRENGGASSEEGGRGHPTSSSSPLATLADLASTASSA 264
The following BLAST results are available for this feature:
BLAST of NO21G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800Expect = 1.80e-52 / Id = 49.08SequenceEWM22595.1
Match NameE-valueIdentityDescription
EWM22595.11.800e-5249.08GNAT domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00960NO21G00960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00960.1NO21G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00960.1.cds1NO21G00960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00960.1 ID=NO21G00960.1|Name=NO21G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
ATGCACGTGACCTTGGGGGGTATTCACGAGGGAAATTTGGCTGAGCTTCG
GCTTCTGAACGATACCACTTTCCCCGTCCGCTATAACGATAAATTTTATC
GCGAGGTTTTAACGACCCTTCCGGAATTTACGAGGTATGCTTACGTGCAT
AACAAGGTGGTGGGGGCAATTTGTTGTCGGGTGGAGGAAGAAGAGGTAGA
AGAAGAGAGAGGTGATGACAAAAGGGAAGAGCAGCAACAGTTGTCATTGC
CTGCGTTGCTGCTGCAGCAGCAGCAGCGGGAGGAGGGAGGACTCACGAGG
ACCCCACTAACAGAAGTAGCACATGGCTCCATGATTCGAGCTCCTAGAAG
AACCAAGCGAAGAAGGAGGCTGTATATAATGACGTTGGGGGTTCAAGCTG
CATATCGCGGTCAAGGGATTGGCTCCCGCTTACTGACCTCTGTGCTGGAC
GCCGCAACACGACCACCACAGTGCTCCAGCAATGATCCCTGTGACCTCGA
TATTGAAGAGATCTACCTGCACGTCCAAACGTCTAATGCGGACGCCATCA
ATTTCTACTCGAAATTCGGCTTTGTCACCCGGGAGATAATCAAAAATTAT
TACAAGAGAATCGAGCCGCCTGATTGTTACATTCTATCAAGAACGCTTGG
AAGAGGAAAGAATGCGAGGGACAGGAAGAGGGAAACATCAACAGCAGCAT
CGTCTACTCTGGCGGAGCTAGCAACATCAGCAACAGCAGCAGTAGGGGAC
GCAGAAATCAGAGGCATGACACATTTGGTGTGTTCTGTTCAACAAAAAGG
CAGTAAAGATAAAATTGCTTAA
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protein sequence of NO21G00960.1

>NO21G00960.1-protein ID=NO21G00960.1-protein|Name=NO21G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MHVTLGGIHEGNLAELRLLNDTTFPVRYNDKFYREVLTTLPEFTRYAYVH
NKVVGAICCRVEEEEVEEERGDDKREEQQQLSLPALLLQQQQREEGGLTR
TPLTEVAHGSMIRAPRRTKRRRRLYIMTLGVQAAYRGQGIGSRLLTSVLD
AATRPPQCSSNDPCDLDIEEIYLHVQTSNADAINFYSKFGFVTREIIKNY
YKRIEPPDCYILSRTLGRGKNARDRKRETSTAASSTLAELATSATAAVGD
AEIRGMTHLVCSVQQKGSKDKIA*
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mRNA from alignment at chr21:310467..311288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00960.1 ID=NO21G00960.1|Name=NO21G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=822bp|location=Sequence derived from alignment at chr21:310467..311288- (Nannochloropsis oceanica)
ATGCACGTGACCTTGGGGGGTATTCACGAGGGAAATTTGGCTGAGCTTCG
GCTTCTGAACGATACCACTTTCCCCGTCCGCTATAACGATAAATTTTATC
GCGAGGTTTTAACGACCCTTCCGGAATTTACGAGGTATGCTTACGTGCAT
AACAAGGTGGTGGGGGCAATTTGTTGTCGGGTGGAGGAAGAAGAGGTAGA
AGAAGAGAGAGGTGATGACAAAAGGGAAGAGCAGCAACAGTTGTCATTGC
CTGCGTTGCTGCTGCAGCAGCAGCAGCGGGAGGAGGGAGGACTCACGAGG
ACCCCACTAACAGAAGTAGCACATGGCTCCATGATTCGAGCTCCTAGAAG
AACCAAGCGAAGAAGGAGGCTGTATATAATGACGTTGGGGGTTCAAGCTG
CATATCGCGGTCAAGGGATTGGCTCCCGCTTACTGACCTCTGTGCTGGAC
GCCGCAACACGACCACCACAGTGCTCCAGCAATGATCCCTGTGACCTCGA
TATTGAAGAGATCTACCTGCACGTCCAAACGTCTAATGCGGACGCCATCA
ATTTCTACTCGAAATTCGGCTTTGTCACCCGGGAGATAATCAAAAATTAT
TACAAGAGAATCGAGCCGCCTGATTGTTACATTCTATCAAGAACGCTTGG
AAGAGGAAAGAATGCGAGGGACAGGAAGAGGGAAACATCAACAGCAGCAT
CGTCTACTCTGGCGGAGCTAGCAACATCAGCAACAGCAGCAGTAGGGGAC
GCAGAAATCAGAGGCATGACACATTTGGTGTGTTCTGTTCAACAAAAAGG
CAGTAAAGATAAAATTGCTTAA
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Coding sequence (CDS) from alignment at chr21:310467..311288-

>NO21G00960.1 ID=NO21G00960.1|Name=NO21G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr21:310467..311288- (Nannochloropsis oceanica)
ATGCACGTGACCTTGGGGGGTATTCACGAGGGAAATTTGGCTGAGCTTCG
GCTTCTGAACGATACCACTTTCCCCGTCCGCTATAACGATAAATTTTATC
GCGAGGTTTTAACGACCCTTCCGGAATTTACGAGGTATGCTTACGTGCAT
AACAAGGTGGTGGGGGCAATTTGTTGTCGGGTGGAGGAAGAAGAGGTAGA
AGAAGAGAGAGGTGATGACAAAAGGGAAGAGCAGCAACAGTTGTCATTGC
CTGCGTTGCTGCTGCAGCAGCAGCAGCGGGAGGAGGGAGGACTCACGAGG
ACCCCACTAACAGAAGTAGCACATGGCTCCATGATTCGAGCTCCTAGAAG
AACCAAGCGAAGAAGGAGGCTGTATATAATGACGTTGGGGGTTCAAGCTG
CATATCGCGGTCAAGGGATTGGCTCCCGCTTACTGACCTCTGTGCTGGAC
GCCGCAACACGACCACCACAGTGCTCCAGCAATGATCCCTGTGACCTCGA
TATTGAAGAGATCTACCTGCACGTCCAAACGTCTAATGCGGACGCCATCA
ATTTCTACTCGAAATTCGGCTTTGTCACCCGGGAGATAATCAAAAATTAT
TACAAGAGAATCGAGCCGCCTGATTGTTACATTCTATCAAGAACGCTTGG
AAGAGGAAAGAATGCGAGGGACAGGAAGAGGGAAACATCAACAGCAGCAT
CGTCTACTCTGGCGGAGCTAGCAACATCAGCAACAGCAGCAGTAGGGGAC
GCAGAAATCAGAGGCATGACACATTTGGTGTGTTCTGTTCAACAAAAAGG
CAGTAAAGATAAAATTGCTTAA
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Synonyms
Publications