NO21G00930.1, NO21G00930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00930.1
Unique NameNO21G00930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length726
Alignment locationchr21:306673..307789 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:306673..307789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00930.1 vs.
Match: EWM22608.1 (aminotransferase class i and ii [Nannochloropsis gaditana])

HSP 1 Score: 402.1 bits (1032), Expect = 1.200e-108
Identity = 191/237 (80.59%), Postives = 211/237 (89.03%), Query Frame = 0 
Query:    1 MFTLCNPHNPVGKVFTIEELRQLGYFCKRHDLILLSDEIYHDLILDPALTPHVPIAALEDPELMKRTIILHAASKTYNVPGLSCAYAIIPDLALRTRFKKAAKGFVTEINAFGYESLYASYTGGESWRQSMLSYLKSNRDFLHHFFSTRLPLLKPYPNHDATYLLWVDTSALAPYLKQGEEAAEFFMREAKVAVSDGRDFGAKHHVRINFGCPRARLLEGLEKMEKAVNELVAARGK 238
            MFTLCNPHNPVGKVFT +EL +LG FCKRHDL+LLSDEIYHDLIL+P  TPHVPIAAL D +LMKRTIILHAASKTYNVPGLSCAYA+IPD+ LRTRFK+AA+GFVTEINAFGYESL+ASYTGGE WRQ+MLSYL+ NRDFL HF  TR+PLL+PY NHDATYLLWVDTSALAPYL QG EAA FF+  A+VAVSDGRDFG  HHVRINFGCPRARL  GLE ME+A+N++VAA  K
Sbjct:  199 MFTLCNPHNPVGKVFTAQELGELGDFCKRHDLVLLSDEIYHDLILEPDRTPHVPIAALGDADLMKRTIILHAASKTYNVPGLSCAYAVIPDIELRTRFKRAARGFVTEINAFGYESLHASYTGGEEWRQAMLSYLRGNRDFLVHFIKTRIPLLRPYSNHDATYLLWVDTSALAPYLSQGVEAATFFLENAQVAVSDGRDFGVFHHVRINFGCPRARLQIGLENMERAINDVVAAAEK 435
The following BLAST results are available for this feature:
BLAST of NO21G00930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22608.11.200e-10880.59aminotransferase class i and ii [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00930NO21G00930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00930.1NO21G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00930.1.cds1NO21G00930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00930.1.cds2NO21G00930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00930.1.cds3NO21G00930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00930.1 ID=NO21G00930.1|Name=NO21G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=726bp
ATGTTCACGCTTTGTAATCCTCACAATCCGGTGGGGAAGGTGTTTACAAT
TGAGGAACTGCGGCAATTGGGTTATTTCTGCAAGCGTCATGACCTCATCC
TTCTCTCCGACGAGATTTACCACGACCTGATCCTCGACCCAGCACTCACT
CCCCACGTCCCCATCGCGGCCCTTGAAGACCCGGAGCTGATGAAAAGGAC
GATTATCCTCCACGCCGCGAGCAAGACGTACAATGTGCCTGGCCTCTCAT
GCGCCTATGCCATCATTCCCGACCTCGCGCTTCGGACGCGGTTCAAAAAG
GCCGCAAAGGGCTTTGTGACAGAAATCAACGCCTTCGGGTACGAATCCTT
GTACGCGTCTTACACCGGAGGCGAATCCTGGCGTCAGTCGATGCTTTCCT
ACCTCAAGAGCAACAGGGACTTCCTCCACCACTTCTTTTCCACCCGCCTC
CCCCTCCTGAAGCCCTACCCCAACCATGACGCCACCTACCTGCTGTGGGT
GGATACTTCTGCTTTGGCACCTTATCTCAAGCAAGGAGAGGAGGCCGCAG
AATTCTTCATGAGAGAGGCGAAGGTGGCTGTGTCGGACGGAAGGGACTTT
GGAGCTAAGCACCACGTGAGGATTAATTTTGGATGTCCACGCGCACGACT
GCTGGAAGGGTTGGAAAAAATGGAAAAGGCCGTGAATGAGCTCGTGGCAG
CCAGAGGAAAGAAAGAGGGAAAGTGA
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protein sequence of NO21G00930.1

>NO21G00930.1-protein ID=NO21G00930.1-protein|Name=NO21G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MFTLCNPHNPVGKVFTIEELRQLGYFCKRHDLILLSDEIYHDLILDPALT
PHVPIAALEDPELMKRTIILHAASKTYNVPGLSCAYAIIPDLALRTRFKK
AAKGFVTEINAFGYESLYASYTGGESWRQSMLSYLKSNRDFLHHFFSTRL
PLLKPYPNHDATYLLWVDTSALAPYLKQGEEAAEFFMREAKVAVSDGRDF
GAKHHVRINFGCPRARLLEGLEKMEKAVNELVAARGKKEGK*
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mRNA from alignment at chr21:306673..307789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00930.1 ID=NO21G00930.1|Name=NO21G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp|location=Sequence derived from alignment at chr21:306673..307789- (Nannochloropsis oceanica)
ATGTTCACGCTTTGTAATCCTCACAATCCGGTGGGGAAGGTGTTTACAAT
TGAGGTACGGGTGGGGGGGGTGTCGAGGGCTTCAATTATCCATCGCCCTG
CTTTTCATGTCCTTGTTTTTTCAAGGGACAGGTATATATTCTTTCCGCCC
TCCCTCCCTCCCTCCTCCCCCTCTTCACAGGAACTGCGGCAATTGGGTTA
TTTCTGCAAGCGTCATGACCTCATCCTTCTCTCCGACGAGATTTACCACG
ACCTGATCCTCGACCCAGCACTCACTCCCCACGTCCCCATCGCGGCCCTT
GAAGACCCGGAGCTGATGAAAAGGACGATTATCCTCCACGCCGCGAGCAA
GACGTACAATGTGCCTGGCCTCTCATGCGCCTATGCCATCATTCCCGACC
TCGCGCTTCGGACGCGGTTCAAAAAGGCCGCAAAGGGCTTTGTGACAGGT
GAACAAATCGTGTCTTCATTTTAATTAACAAAACGTTTCTTTTATTTTTC
AAATCGTCTAGGCTGGTTGGCTTTCGATTCCCAAGGTTTTGGGAAGGCTT
ACGCTTGCCTTTCTCTTCTCGTCGTCTTTTTGTTTTTGGTCCCCACTACC
AGTCAAACCTTCAGTCACGCATTCCCATTACCCTCCTGCACCGGCAACTA
GAGCCAGGCATCCATATCTTCTCATCTTGCCCCCCCTCTCTCCCTTACCC
TCTCCTTCCCAAGAAATCAACGCCTTCGGGTACGAATCCTTGTACGCGTC
TTACACCGGAGGCGAATCCTGGCGTCAGTCGATGCTTTCCTACCTCAAGA
GCAACAGGGACTTCCTCCACCACTTCTTTTCCACCCGCCTCCCCCTCCTG
AAGCCCTACCCCAACCATGACGCCACCTACCTGCTGTGGGTGGATACTTC
TGCTTTGGCACCTTATCTCAAGCAAGGAGAGGAGGCCGCAGAATTCTTCA
TGAGAGAGGCGAAGGTGGCTGTGTCGGACGGAAGGGACTTTGGAGCTAAG
CACCACGTGAGGATTAATTTTGGATGTCCACGCGCACGACTGCTGGAAGG
GTTGGAAAAAATGGAAAAGGCCGTGAATGAGCTCGTGGCAGCCAGAGGAA
AGAAAGAGGGAAAGTGA
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Coding sequence (CDS) from alignment at chr21:306673..307789-

>NO21G00930.1 ID=NO21G00930.1|Name=NO21G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at chr21:306673..307789- (Nannochloropsis oceanica)
ATGTTCACGCTTTGTAATCCTCACAATCCGGTGGGGAAGGTGTTTACAAT
TGAGGAACTGCGGCAATTGGGTTATTTCTGCAAGCGTCATGACCTCATCC
TTCTCTCCGACGAGATTTACCACGACCTGATCCTCGACCCAGCACTCACT
CCCCACGTCCCCATCGCGGCCCTTGAAGACCCGGAGCTGATGAAAAGGAC
GATTATCCTCCACGCCGCGAGCAAGACGTACAATGTGCCTGGCCTCTCAT
GCGCCTATGCCATCATTCCCGACCTCGCGCTTCGGACGCGGTTCAAAAAG
GCCGCAAAGGGCTTTGTGACAGAAATCAACGCCTTCGGGTACGAATCCTT
GTACGCGTCTTACACCGGAGGCGAATCCTGGCGTCAGTCGATGCTTTCCT
ACCTCAAGAGCAACAGGGACTTCCTCCACCACTTCTTTTCCACCCGCCTC
CCCCTCCTGAAGCCCTACCCCAACCATGACGCCACCTACCTGCTGTGGGT
GGATACTTCTGCTTTGGCACCTTATCTCAAGCAAGGAGAGGAGGCCGCAG
AATTCTTCATGAGAGAGGCGAAGGTGGCTGTGTCGGACGGAAGGGACTTT
GGAGCTAAGCACCACGTGAGGATTAATTTTGGATGTCCACGCGCACGACT
GCTGGAAGGGTTGGAAAAAATGGAAAAGGCCGTGAATGAGCTCGTGGCAG
CCAGAGGAAAGAAAGAGGGAAAGTGA
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Synonyms
Publications