NO21G00860.1, NO21G00860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00860.1
Unique NameNO21G00860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1839
Alignment locationchr21:286327..288876 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:286327..288876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00860.1 vs.
Match: ORZ40769.1 (S-adenosyl-L-methionine-dependent methyltransferase [Catenaria anguillulae PL171])

HSP 1 Score: 95.9 bits (237), Expect = 4.600e-16
Identity = 133/444 (29.95%), Postives = 184/444 (41.44%), Query Frame = 0 
Query:    1 MDHYQQASRVLADVLAKKGSIKTLALAKDIRNKRFVTALVTETLRHRSTIDVVLHRSKL--HSILRKQIRDPHLLALLLYDLLFG-KGIQGGGSVKRTLKHHEAVLRRATEGLILPEKHMSKQSQGWEEGGAGGTA---------AFPRYARVNTLKISLAEARSQLISSPPSSLPTSSSSREHARAAAAASAACQDVGSAPIAASVSSVVYALDRDGHRLDILKERVIGLMGAKGRLVVPLLQDFLSINPQQQQQPPEG-------RGRGTKKGRKGVAGLEGGREGGVEGRFREVRA------------IMLDPSCSGSGMVKSMERRLEEEEEEVEVEEGEERKRGGRKEWTYRDWDGGVKGGKEGEKEGEAVEEEERKSTKAVIKDGGATQRLRALSQFQFKALVKALVDFPAVNRVVYSTCSIHVEENEMVVAAALKSQ 414
            M+ Y  A+ +LA +  KKGS+K+L LA  ++NK+ V ALV +TL+  S +   L R  +  H       RD  L  +L +DLLF  +GI  GG VK  +  H   LR A   +   +     Q  G  +  A   A           PRY RVNTLK S+     Q            S ++ HA A+A ++         P   S+  +V+    D H         +  M   G ++   LQD  S  P     PPEG          G K           G     +   R +              I+LDPSCSGSG+V  ++  ++ E     V E E R + G               GK   K   A EE E               RL+AL++FQ + ++ A+  FP V  + YSTCSIH +ENE VVAA L +Q
Sbjct:    1 MEDYTTAADILAKLRQKKGSVKSLCLAPKVQNKKKVYALVCQTLKCHSILSDALTRVDVLAHEPSLNNSRD--LALVLAHDLLFARRGILCGGWVKPVMMRHRTALRAALVAIAREKGIEIAQGTGHAKVAAAVMAYVEGDQPSVPLPRYVRVNTLKTSVDVVIKQF----------DSLAQAHALASAGSALEKGHFYQDPHLPSL--LVFPPSTDFH---------LEPMYTHGEII---LQDKASSFPAHILSPPEGAHCIDGCAAPGNKTSHLSAILNNSGHITAYDLDSRRLETLKTMTKKAGLTHILLDPSCSGSGIVARLDHLVDTE----LVAEAEPRPKQGH--------------GKGKSKGAAATEESEE-------------DRLQALAKFQIECVLHAM-KFPNVQSITYSTCSIHPQENEHVVAAILAAQ 386
The following BLAST results are available for this feature:
BLAST of NO21G00860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
ORZ40769.14.600e-1629.95S-adenosyl-L-methionine-dependent methyltransferas... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00860NO21G00860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00860.1NO21G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00860.1.cds1NO21G00860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00860.1.cds2NO21G00860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00860.1.cds3NO21G00860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00860.1 ID=NO21G00860.1|Name=NO21G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp
ATGGACCACTACCAACAAGCCTCGCGGGTCCTCGCTGACGTCTTAGCCAA
GAAGGGTAGCATCAAGACGCTGGCCCTGGCCAAGGACATTCGCAACAAGC
GCTTCGTCACGGCCCTGGTCACCGAAACTCTCCGCCATAGATCCACAATT
GACGTCGTTCTCCATCGGTCCAAACTCCACTCCATCCTCCGAAAGCAAAT
CCGCGACCCCCACCTCCTCGCCCTCCTCCTCTATGATCTTCTCTTTGGCA
AAGGCATACAAGGGGGAGGCTCCGTCAAACGCACCCTGAAGCACCACGAA
GCCGTCCTTCGTCGTGCTACTGAGGGGTTGATACTCCCTGAGAAGCACAT
GTCAAAGCAGTCACAGGGATGGGAGGAAGGGGGGGCGGGAGGGACAGCAG
CATTCCCGCGCTACGCCAGAGTCAACACCCTAAAAATCTCATTAGCAGAA
GCCCGCTCCCAACTCATTTCTTCCCCCCCTTCCTCCCTCCCTACCTCCTC
CTCCTCACGCGAGCACGCGAGAGCAGCAGCAGCAGCGTCTGCTGCCTGCC
AAGACGTCGGTAGTGCGCCAATTGCTGCCTCTGTGTCCTCAGTGGTGTAT
GCATTAGACAGGGATGGGCATCGGCTGGATATTTTGAAGGAGAGGGTGAT
AGGGCTGATGGGCGCGAAGGGAAGGCTGGTGGTCCCCCTACTCCAAGACT
TTCTATCGATCAACCCGCAGCAGCAGCAGCAGCCACCAGAGGGAAGAGGT
AGAGGCACGAAGAAGGGGAGAAAGGGTGTGGCAGGTTTGGAGGGAGGGAG
GGAGGGAGGGGTGGAAGGACGATTCAGGGAGGTGCGTGCCATCATGCTTG
ATCCATCGTGCTCCGGCTCGGGGATGGTGAAGAGTATGGAGAGACGGTTG
GAGGAGGAGGAGGAGGAGGTGGAGGTGGAGGAAGGGGAGGAGAGAAAGAG
GGGAGGGAGAAAAGAGTGGACATATCGGGATTGGGATGGGGGAGTCAAGG
GAGGGAAGGAGGGCGAGAAGGAGGGCGAGGCGGTGGAGGAGGAAGAGAGG
AAGAGTACCAAGGCGGTGATTAAAGATGGCGGGGCGACACAGAGGCTGAG
GGCACTTTCTCAGTTCCAATTCAAAGCGTTAGTCAAGGCTTTGGTTGATT
TTCCGGCGGTCAACCGGGTGGTGTACTCGACGTGCTCGATCCATGTCGAG
GAGAATGAGATGGTGGTGGCCGCTGCATTGAAGTCGCAGAGAAAAGCATA
CGGGGAAGGAGCAGCCGACAAGGAAGGGAAAGAAGGAGGGGGCGTGATGG
AAGGCAGTGGAAAGGAGGGAGAAAAGAAGCGGCAAACCCAGGAGCAAAAG
CAACAGCTGGCACCATTTGAGCTTGTCCGGGCGTTACCTTCATGGCCTCG
ACGGGGCTTGTCTCGCACGCTCGAGGGGAGGGAGACGGGGTTGAGCGAGG
AGGAGGCCAACTGCCTCGTGAGGACCGATCCCCGACATGATTTGACCAAT
GGCTTTTTTGTCGCTTACTTTGAGAGGGAGGGAACGGGAGGAGCAGGGAA
GAAATTGAGGCTGAGCAATGTAAAAGGTGGAGGACGAAAAGTGATAAAGG
GTACGGCCGAAACGGTTGCGGTGGTTCCAACCGTGGGTGGGACGAAGCGT
CCGCGGGAGGGAGGGGAGAGAACGGAGCAAGGAGGGGATAGATCGGGTGG
GGGTAGGGTCAGTTCCAAGCAGAACAAATCTGCTAAACGACGGGAGAGGA
GGAAGAAGCAGAAAAGGCTTGCGGGGGAAGGGAGGGGAGAGGGAGACGGG
GAAGCTCGTGGAGGGGAGGTGCAGAAGACGGCGGAGTGA
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protein sequence of NO21G00860.1

>NO21G00860.1-protein ID=NO21G00860.1-protein|Name=NO21G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MDHYQQASRVLADVLAKKGSIKTLALAKDIRNKRFVTALVTETLRHRSTI
DVVLHRSKLHSILRKQIRDPHLLALLLYDLLFGKGIQGGGSVKRTLKHHE
AVLRRATEGLILPEKHMSKQSQGWEEGGAGGTAAFPRYARVNTLKISLAE
ARSQLISSPPSSLPTSSSSREHARAAAAASAACQDVGSAPIAASVSSVVY
ALDRDGHRLDILKERVIGLMGAKGRLVVPLLQDFLSINPQQQQQPPEGRG
RGTKKGRKGVAGLEGGREGGVEGRFREVRAIMLDPSCSGSGMVKSMERRL
EEEEEEVEVEEGEERKRGGRKEWTYRDWDGGVKGGKEGEKEGEAVEEEER
KSTKAVIKDGGATQRLRALSQFQFKALVKALVDFPAVNRVVYSTCSIHVE
ENEMVVAAALKSQRKAYGEGAADKEGKEGGGVMEGSGKEGEKKRQTQEQK
QQLAPFELVRALPSWPRRGLSRTLEGRETGLSEEEANCLVRTDPRHDLTN
GFFVAYFEREGTGGAGKKLRLSNVKGGGRKVIKGTAETVAVVPTVGGTKR
PREGGERTEQGGDRSGGGRVSSKQNKSAKRRERRKKQKRLAGEGRGEGDG
EARGGEVQKTAE*
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mRNA from alignment at chr21:286327..288876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00860.1 ID=NO21G00860.1|Name=NO21G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2550bp|location=Sequence derived from alignment at chr21:286327..288876- (Nannochloropsis oceanica)
ATGGACCACTACCAACAAGCCTCGCGGGTCCTCGCTGACGTCTTAGCCAA
GAAGGGTAGCATCAAGACGCTGGCCCTGGCCAAGGACATTCGCAACAAGG
TACGTAAAAGCGGACAGATAGGCAAGTGCATTGACCTCCCCCATCGTGCG
GCAGCCCGCACTTCCCCTCTCTCTGTCGCCCGCTCTTACTCCCTCTTATT
CTCTTTGCATGCACTCTCAGTCATCTGGACATCCTTCTGTAGTACTCAGG
TTCAGTCCGCTCTTTTTGTGAACGTACCACTCTCAATGAATTTGGTTCAG
CCCATACCCCTCTTACCATGCCCCTCTTACCATGCCCACCCACCCATTCA
GACTAACACCCTCCCTTTCTGCTGAAGCATTTCGTCAACACCCTCATGAC
TACACCTCTGCGATACAAATCAGCCATCAACTTTGTCCCTGGATGCTCAA
TCTCCACTTTGCTCTCCCAAGGAAAGCAAGCGGTTCTCACTCAAAACCTC
CCTCCTTCTCTCCCTCCATTCGTCCCTCTCTCCCTTCCCTCTAGCGCTTC
GTCACGGCCCTGGTCACCGAAACTCTCCGCCATAGATCCACAATTGACGT
CGTTCTCCATCGGTCCAAACTCCACTCCATCCTCCGAAAGCAAATCCGCG
ACCCCCACCTCCTCGCCCTCCTCCTCTATGATCTTCTCTTTGGCAAAGGC
ATACAAGGGGGAGGCTCCGTCAAACGCACCCTGAAGCACCACGAAGCCGT
CCTTCGTCGTGCTACTGAGGGGTTGATACTCCCTGAGAAGCACATGTCAA
AGCAGTCACAGGGATGGGAGGAAGGGGGGGCGGGAGGGACAGCAGCATTC
CCGCGCTACGCCAGAGTCAACACCCTAAAAATCTCATTAGCAGAAGCCCG
CTCCCAACTCATTTCTTCCCCCCCTTCCTCCCTCCCTACCTCCTCCTCCT
CACGCGTAAGTTTCACGGCCGATGAAATCAAAGATGACGAGCACATCCCG
AACCTCCTCCTCTTCCCCCCGGGAGCGACCTCCACGACCATCCCTTGGTT
AAATCGGGAGCATTAATCCTCCAAGATAAAGCATCCTGTTTCCCCGCCCA
TGTCTTGCTGGGGAAAGAGGGAGGGAAGGAGGGAGGGAGGGAGGACTGGT
GGGTCGGGGATGTGATTGATGCGTGTGCGGCGCCGGGAAACAAAACGTCC
CATGCCGCGGCCTTGTTGCAGGAGCACGCGAGAGCAGCAGCAGCAGCGTC
TGCTGCCTGCCAAGACGTCGGTAGTGCGCCAATTGCTGCCTCTGTGTCCT
CAGTGGTGTATGCATTAGACAGGGATGGGCATCGGCTGGATATTTTGAAG
GAGAGGGTGATAGGGCTGATGGGCGCGAAGGGAAGGCTGGTGGTCCCCCT
ACTCCAAGACTTTCTATCGATCAACCCGCAGCAGCAGCAGCAGCCACCAG
AGGGAAGAGGTAGAGGCACGAAGAAGGGGAGAAAGGGTGTGGCAGGTTTG
GAGGGAGGGAGGGAGGGAGGGGTGGAAGGACGATTCAGGGAGGTGCGTGC
CATCATGCTTGATCCATCGTGCTCCGGCTCGGGGATGGTGAAGAGTATGG
AGAGACGGTTGGAGGAGGAGGAGGAGGAGGTGGAGGTGGAGGAAGGGGAG
GAGAGAAAGAGGGGAGGGAGAAAAGAGTGGACATATCGGGATTGGGATGG
GGGAGTCAAGGGAGGGAAGGAGGGCGAGAAGGAGGGCGAGGCGGTGGAGG
AGGAAGAGAGGAAGAGTACCAAGGCGGTGATTAAAGATGGCGGGGCGACA
CAGAGGCTGAGGGCACTTTCTCAGTTCCAATTCAAAGCGTTAGTCAAGGC
TTTGGTTGATTTTCCGGCGGTCAACCGGGTGGTGTACTCGACGTGCTCGA
TCCATGTCGAGGAGAATGAGATGGTGGTGGCCGCTGCATTGAAGTCGCAG
AGAAAAGCATACGGGGAAGGAGCAGCCGACAAGGAAGGGAAAGAAGGAGG
GGGCGTGATGGAAGGCAGTGGAAAGGAGGGAGAAAAGAAGCGGCAAACCC
AGGAGCAAAAGCAACAGCTGGCACCATTTGAGCTTGTCCGGGCGTTACCT
TCATGGCCTCGACGGGGCTTGTCTCGCACGCTCGAGGGGAGGGAGACGGG
GTTGAGCGAGGAGGAGGCCAACTGCCTCGTGAGGACCGATCCCCGACATG
ATTTGACCAATGGCTTTTTTGTCGCTTACTTTGAGAGGGAGGGAACGGGA
GGAGCAGGGAAGAAATTGAGGCTGAGCAATGTAAAAGGTGGAGGACGAAA
AGTGATAAAGGGTACGGCCGAAACGGTTGCGGTGGTTCCAACCGTGGGTG
GGACGAAGCGTCCGCGGGAGGGAGGGGAGAGAACGGAGCAAGGAGGGGAT
AGATCGGGTGGGGGTAGGGTCAGTTCCAAGCAGAACAAATCTGCTAAACG
ACGGGAGAGGAGGAAGAAGCAGAAAAGGCTTGCGGGGGAAGGGAGGGGAG
AGGGAGACGGGGAAGCTCGTGGAGGGGAGGTGCAGAAGACGGCGGAGTGA
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Coding sequence (CDS) from alignment at chr21:286327..288876-

>NO21G00860.1 ID=NO21G00860.1|Name=NO21G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at chr21:286327..288876- (Nannochloropsis oceanica)
ATGGACCACTACCAACAAGCCTCGCGGGTCCTCGCTGACGTCTTAGCCAA
GAAGGGTAGCATCAAGACGCTGGCCCTGGCCAAGGACATTCGCAACAAGC
GCTTCGTCACGGCCCTGGTCACCGAAACTCTCCGCCATAGATCCACAATT
GACGTCGTTCTCCATCGGTCCAAACTCCACTCCATCCTCCGAAAGCAAAT
CCGCGACCCCCACCTCCTCGCCCTCCTCCTCTATGATCTTCTCTTTGGCA
AAGGCATACAAGGGGGAGGCTCCGTCAAACGCACCCTGAAGCACCACGAA
GCCGTCCTTCGTCGTGCTACTGAGGGGTTGATACTCCCTGAGAAGCACAT
GTCAAAGCAGTCACAGGGATGGGAGGAAGGGGGGGCGGGAGGGACAGCAG
CATTCCCGCGCTACGCCAGAGTCAACACCCTAAAAATCTCATTAGCAGAA
GCCCGCTCCCAACTCATTTCTTCCCCCCCTTCCTCCCTCCCTACCTCCTC
CTCCTCACGCGAGCACGCGAGAGCAGCAGCAGCAGCGTCTGCTGCCTGCC
AAGACGTCGGTAGTGCGCCAATTGCTGCCTCTGTGTCCTCAGTGGTGTAT
GCATTAGACAGGGATGGGCATCGGCTGGATATTTTGAAGGAGAGGGTGAT
AGGGCTGATGGGCGCGAAGGGAAGGCTGGTGGTCCCCCTACTCCAAGACT
TTCTATCGATCAACCCGCAGCAGCAGCAGCAGCCACCAGAGGGAAGAGGT
AGAGGCACGAAGAAGGGGAGAAAGGGTGTGGCAGGTTTGGAGGGAGGGAG
GGAGGGAGGGGTGGAAGGACGATTCAGGGAGGTGCGTGCCATCATGCTTG
ATCCATCGTGCTCCGGCTCGGGGATGGTGAAGAGTATGGAGAGACGGTTG
GAGGAGGAGGAGGAGGAGGTGGAGGTGGAGGAAGGGGAGGAGAGAAAGAG
GGGAGGGAGAAAAGAGTGGACATATCGGGATTGGGATGGGGGAGTCAAGG
GAGGGAAGGAGGGCGAGAAGGAGGGCGAGGCGGTGGAGGAGGAAGAGAGG
AAGAGTACCAAGGCGGTGATTAAAGATGGCGGGGCGACACAGAGGCTGAG
GGCACTTTCTCAGTTCCAATTCAAAGCGTTAGTCAAGGCTTTGGTTGATT
TTCCGGCGGTCAACCGGGTGGTGTACTCGACGTGCTCGATCCATGTCGAG
GAGAATGAGATGGTGGTGGCCGCTGCATTGAAGTCGCAGAGAAAAGCATA
CGGGGAAGGAGCAGCCGACAAGGAAGGGAAAGAAGGAGGGGGCGTGATGG
AAGGCAGTGGAAAGGAGGGAGAAAAGAAGCGGCAAACCCAGGAGCAAAAG
CAACAGCTGGCACCATTTGAGCTTGTCCGGGCGTTACCTTCATGGCCTCG
ACGGGGCTTGTCTCGCACGCTCGAGGGGAGGGAGACGGGGTTGAGCGAGG
AGGAGGCCAACTGCCTCGTGAGGACCGATCCCCGACATGATTTGACCAAT
GGCTTTTTTGTCGCTTACTTTGAGAGGGAGGGAACGGGAGGAGCAGGGAA
GAAATTGAGGCTGAGCAATGTAAAAGGTGGAGGACGAAAAGTGATAAAGG
GTACGGCCGAAACGGTTGCGGTGGTTCCAACCGTGGGTGGGACGAAGCGT
CCGCGGGAGGGAGGGGAGAGAACGGAGCAAGGAGGGGATAGATCGGGTGG
GGGTAGGGTCAGTTCCAAGCAGAACAAATCTGCTAAACGACGGGAGAGGA
GGAAGAAGCAGAAAAGGCTTGCGGGGGAAGGGAGGGGAGAGGGAGACGGG
GAAGCTCGTGGAGGGGAGGTGCAGAAGACGGCGGAGTGA
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Synonyms
Publications