NO21G00610.1, NO21G00610.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO21G00610.1
Unique Name	NO21G00610.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	933
Alignment location	chr21:212392..213324 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr21	genome	chr21:212392..213324 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO21G00610.1 vs.

BLAST of NO21G00610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO21G00610	NO21G00610	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO21G00610.1	NO21G00610.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO21G00610.1.cds1	NO21G00610.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr21:212392..213324-
coding sequence from alignment at chr21:212392..213324-

mRNA sequence

>NO21G00610.1 ID=NO21G00610.1|Name=NO21G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ATGCTATTTTTAAATGTCATCGTTCCGGGAAGCAGCAGCAGCAGCATCAG
TGGTATTGGTAACAGCCCTGCTGCCTTGCTGGCCGACGAGTTGGATTTAT
TGGAAGGCTTTCTGGGCCTCTCCCCTTCCTCCTCCTCCTTCCCCGCCTCA
TACTCCAGCTCCTCCTCTTCCTCCACAACCTTCAACGACAAGCTGTACCC
AGGACAAATTTTGGGAAGACATCACACCCAAGCAACCGCAGCCATAGCAG
CAGCACCAGCAGCAGCAGCAGAACCTACGCTTTTCGGCCTCGATTTCAAT
GCCCCTCCATCCACAGCGAACGACCCCTCCCTCCCTCCCTCCCTCCCCTC
CATCCTGACCATCAAAAGCTACGACAGCACGCGCCTTGCCTCCCAGGTCC
AGTGGAGCATGCGCGCCCTCCAACCTCCCCCTTCATCTTTCCCTTCCTAT
CTCCCTGCCTCCTCCCTGGCCTTGCCCATCTTTGACCTTCGCATCTGTGG
AGTGCCCGTCTTCTCGAGTAATTGCAGTAGCAGCAGCAGTAGCAGCAGTA
GTAGCAACTGGCTTGGGGTCATCGACTCTCTTTCTCCCAGTCACGCATTC
GACTCTTTCCGTGCTTGGGCCTTGCGCGATAGCCCCGTTTTCTCCTCGTC
CTCCTCCCCTTCCTCGGACTTGTGTGACGTCGATGCTGCTGATAGTTTCA
TCTGCCATCTTCCTCCTTCTCATTTTCAGGAAGCTGCTACCATCAGCAAC
AGCAGCAGCAGCAGCGGCGGCGGCGGCCTCCTGCTTCCGTCCCTTCTCTT
CCACTTGCGAGAACGCTTGTTTGAGGTGGGAGGACAGGAGGACGAGAGAG
GGAAGGAGGAGGGGCTGCTGACGCTGCCATTGGCCGACCTGCTCTCATCC
CCTTCCGAAGATGGGAATCCCAACCGGACTTAA

protein sequence of NO21G00610.1

>NO21G00610.1-protein ID=NO21G00610.1-protein|Name=NO21G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MLFLNVIVPGSSSSSISGIGNSPAALLADELDLLEGFLGLSPSSSSFPAS
YSSSSSSSTTFNDKLYPGQILGRHHTQATAAIAAAPAAAAEPTLFGLDFN
APPSTANDPSLPPSLPSILTIKSYDSTRLASQVQWSMRALQPPPSSFPSY
LPASSLALPIFDLRICGVPVFSSNCSSSSSSSSSSNWLGVIDSLSPSHAF
DSFRAWALRDSPVFSSSSSPSSDLCDVDAADSFICHLPPSHFQEAATISN
SSSSSGGGGLLLPSLLFHLRERLFEVGGQEDERGKEEGLLTLPLADLLSS
PSEDGNPNRT*

mRNA from alignment at chr21:212392..213324-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO21G00610.1 ID=NO21G00610.1|Name=NO21G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp|location=Sequence derived from alignment at chr21:212392..213324- (Nannochloropsis oceanica)
ATGCTATTTTTAAATGTCATCGTTCCGGGAAGCAGCAGCAGCAGCATCAG
TGGTATTGGTAACAGCCCTGCTGCCTTGCTGGCCGACGAGTTGGATTTAT
TGGAAGGCTTTCTGGGCCTCTCCCCTTCCTCCTCCTCCTTCCCCGCCTCA
TACTCCAGCTCCTCCTCTTCCTCCACAACCTTCAACGACAAGCTGTACCC
AGGACAAATTTTGGGAAGACATCACACCCAAGCAACCGCAGCCATAGCAG
CAGCACCAGCAGCAGCAGCAGAACCTACGCTTTTCGGCCTCGATTTCAAT
GCCCCTCCATCCACAGCGAACGACCCCTCCCTCCCTCCCTCCCTCCCCTC
CATCCTGACCATCAAAAGCTACGACAGCACGCGCCTTGCCTCCCAGGTCC
AGTGGAGCATGCGCGCCCTCCAACCTCCCCCTTCATCTTTCCCTTCCTAT
CTCCCTGCCTCCTCCCTGGCCTTGCCCATCTTTGACCTTCGCATCTGTGG
AGTGCCCGTCTTCTCGAGTAATTGCAGTAGCAGCAGCAGTAGCAGCAGTA
GTAGCAACTGGCTTGGGGTCATCGACTCTCTTTCTCCCAGTCACGCATTC
GACTCTTTCCGTGCTTGGGCCTTGCGCGATAGCCCCGTTTTCTCCTCGTC
CTCCTCCCCTTCCTCGGACTTGTGTGACGTCGATGCTGCTGATAGTTTCA
TCTGCCATCTTCCTCCTTCTCATTTTCAGGAAGCTGCTACCATCAGCAAC
AGCAGCAGCAGCAGCGGCGGCGGCGGCCTCCTGCTTCCGTCCCTTCTCTT
CCACTTGCGAGAACGCTTGTTTGAGGTGGGAGGACAGGAGGACGAGAGAG
GGAAGGAGGAGGGGCTGCTGACGCTGCCATTGGCCGACCTGCTCTCATCC
CCTTCCGAAGATGGGAATCCCAACCGGACTTAA

Coding sequence (CDS) from alignment at chr21:212392..213324-

>NO21G00610.1 ID=NO21G00610.1|Name=NO21G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr21:212392..213324- (Nannochloropsis oceanica)
ATGCTATTTTTAAATGTCATCGTTCCGGGAAGCAGCAGCAGCAGCATCAG
TGGTATTGGTAACAGCCCTGCTGCCTTGCTGGCCGACGAGTTGGATTTAT
TGGAAGGCTTTCTGGGCCTCTCCCCTTCCTCCTCCTCCTTCCCCGCCTCA
TACTCCAGCTCCTCCTCTTCCTCCACAACCTTCAACGACAAGCTGTACCC
AGGACAAATTTTGGGAAGACATCACACCCAAGCAACCGCAGCCATAGCAG
CAGCACCAGCAGCAGCAGCAGAACCTACGCTTTTCGGCCTCGATTTCAAT
GCCCCTCCATCCACAGCGAACGACCCCTCCCTCCCTCCCTCCCTCCCCTC
CATCCTGACCATCAAAAGCTACGACAGCACGCGCCTTGCCTCCCAGGTCC
AGTGGAGCATGCGCGCCCTCCAACCTCCCCCTTCATCTTTCCCTTCCTAT
CTCCCTGCCTCCTCCCTGGCCTTGCCCATCTTTGACCTTCGCATCTGTGG
AGTGCCCGTCTTCTCGAGTAATTGCAGTAGCAGCAGCAGTAGCAGCAGTA
GTAGCAACTGGCTTGGGGTCATCGACTCTCTTTCTCCCAGTCACGCATTC
GACTCTTTCCGTGCTTGGGCCTTGCGCGATAGCCCCGTTTTCTCCTCGTC
CTCCTCCCCTTCCTCGGACTTGTGTGACGTCGATGCTGCTGATAGTTTCA
TCTGCCATCTTCCTCCTTCTCATTTTCAGGAAGCTGCTACCATCAGCAAC
AGCAGCAGCAGCAGCGGCGGCGGCGGCCTCCTGCTTCCGTCCCTTCTCTT
CCACTTGCGAGAACGCTTGTTTGAGGTGGGAGGACAGGAGGACGAGAGAG
GGAAGGAGGAGGGGCTGCTGACGCTGCCATTGGCCGACCTGCTCTCATCC
CCTTCCGAAGATGGGAATCCCAACCGGACTTAA

Synonyms

Publications