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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr21 | genome | chr21:211935..215941 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00600.1 vs.
Match: GAX92789.1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, putative, partial [Pythium insidiosum]) HSP 1 Score: 94.4 bits (233), Expect = 9.400e-16 Identity = 74/217 (34.10%), Postives = 102/217 (47.00%), Query Frame = 0
Query: 29 SLSPSIPSR---GSRRLPIYTQLAALPGLPSPFPPSSIPPFIPTLIPIRIDVDIGGIRVIDSFSIDPHDSSLTPEQWARQLCVDLELPAPQEFERRIAHSIRKQLVTYAHDVALLSPIYTSTSSSPSSSPSHPPASQVQPPEPVRGHLCPILLNVRGPGGLTYKEIIEWDVFDPLNSPELLAMHTVADLGLPPSFEPAIALSVREQVLNFRFMLRTG 243
++SP + R GS +LAA L + PP LIPIR+DVD+ G R IDSF+ + H+ T E +A L DL+LP + F +RIA SI Q+ + + T + L PI +N+R L Y + EWD+ DP N PEL A DLGL FE IALS+REQ+ ++ ++R G
Sbjct: 79 AVSPKLKRRLDDGSDSSKTQKRLAASSSLRRLYEYPKHPPSDTLLIPIRLDVDVEGHRFIDSFAWNLHEKDFTYETFAASLVQDLDLP--ECFLKRIAASIEAQVEKAKRSMPWXDAMNTES-------------------------LHPIFINLRLQDTL-YMDRFEWDLSDPRNDPELFAQTVCDDLGLSGEFEAQIALSIREQLRDYSRLIREG 267
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G00600.1 ID=NO21G00600.1|Name=NO21G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3758bp CCTCCCTCCCCCTCCCTCCCCCTCTTCTCCACCTCTTCCTCTCCTGCCTT CCTCTTCCACCACCACCCTCTTCCCTCCGCTGCCATCACCACCAGAGACG TCAATACTACCAGTATCACGATCAAAGGTTTGAACCGACACACGCTCCCA TCCCTGCCCGACAAAAAAATGTTCTCTTGAAAGAGATGGAGGTGTCACGC TGGCCTTACACACACATTCATGTGTTTGTCGTACTCCTCTTGCCCCTGAC AGACAGCGGGGGCAGCACACAGGGAGGGAACGAGGGAGGAACCGCAGGAG GAGGGAGAGGCAGTTTGTTTGCCAGGCCGACCCTTCCGGCGGCGTGGTCA AGTACGACGCAGAGAGAGCGGAGGCAGAGTGTGCCGAAGATGACGTGATT GCTCAGGTACCACCAGTCCCTCTCTCCCTCCCTTCCCCCATCCCCTAGCA CGATGAGTTAAGTCCGGTTGGGATTCCCATCTTCGGAAGGGGATGAGAGC AGGTCGGCCAATGGCAGCGTCAGCAGCCCCTCCTCCTTCCCTCTCTCGTC CTCCTGTCCTCCCACCTCAAACAAGCGTTCTCGCAAGTGGAAGAGAAGGG ACGGAAGCAGGAGGCCGCCGCCGCCGCTGCTGCTGCTGCTGTTGCTGATG GTAGCAGCTTCCTGAAAATGAGAAGGAGGAAGATGGCAGATGAAACTATC AGCAGCATCGACGTCACACAAGTCCGAGGAAGGGGAGGAGGACGAGGAGA AAACGGGGCTATCGCGCAAGGCCCAAGCACGGAAAGAGTCGAATGCGTGA CTGGGAGAAAGAGAGTCGATGACCCCAAGCCAGTTGCTACTACTGCTGCT ACTGCTGCTGCTACTGCAATTACTCGAGAAGACGGGCACTCCACAGATGC GAAGGTCAAAGATGGGCAAGGCCAGGGAGGAGGCAGGGAGATAGGAAGGG AAAGATGAAGGGGGAGGTTGGAGGGCGCGCATGCTCCACTGGACCTGGGA GGCAAGGCGCGTGCTGTCGTAGCTTTTGATGGTCAGGATGGAGGGGAGGG AGGGAGGGAGGGAGGGGTCGTTCGCTGTGGATGGAGGGGCATTGAAATCG AGGCCGAAAAGCGTAGGTTCTGCTGCTGCTGCTGGTGCTGCTGCTATGGC TGCGGTTGCTTGGGTGTGATGTCTTCCCAAAATTTGTCCTGGGTACAGCT TGTCGTTGAAGGTTGTGGAGGAAGAGGAGGAGCTGGAGTATGAGGCGGGG AAGGAGGAGGAGGAAGGGGAGAGGCCCAGAAAGCCTTCCAATAAATCCAA CTCGTCGGCCAGCAAGGCAGCAGGGCTGTTACCAATACCACTGATGCTGC TGCTGCTGCTTCCCGGAACGATGACATTTAAAAATAGCATTGAGGAGGGT GTAGAAGAAGAAGACTAAGAGGAGGAAGATGATGAACCATTGAACAACAC CACCGGTGCCAAAGACAAGGAAACCATCTCGTCTGACGCATTTTCCACTC CTTCTCCTTCCTGCCCTCCCTCTTCCCCTGCGGCCCTTTGAAATCCCGGA GATAAAAACACATTGCCTTGAGCAAGATTACAAGCATCGAGCTCCGCGTT TAGATAATCACTCCCTACCCTCGTATTCCTCCGCCGCCGCGATTCCTCCT TTTCTTCCGCCCCCTTGGTCATGTCTTCCGCACTTATATCTTCTTCGTCT GTCCCCTGCCCGTTGACCGCCTCACCATCATGAACATCGCATCCCTGTAA AGAATTAGGATCCAGCATTGACGCGCTGAGGTAGGAAAGCACGCTGTCAC TATCAGCAGCAGTAGTGGCCGGCGTCGTCACTCTTCGCGCACAGTCTTTG ACCACCAACCTGTCCCCTTGTGTGTCGAGCAAGACATTCCTCAGCACCGT GCCTGTCTCTGAAGCAGTCGAAATTTTTACTGACAGAGAGTCTAGGGCGT AGTAGTAGCGGCCAAAGATCTTCAAGGGCAAGGAGAAAGAGGCAGAGGCA GCCGTAGTACTCGCGGGGGGGCGGGGTGACGGTGGAGAAGCGACAGTTTA GGGCTCCAGGGGCTGCCGATGCCACCTCCGGTTCCTGTAGCTGCTTCCGT CATGAAAAGGATGAGGAAAATTTCGACCCGTGAGTGGGGCTGGATGAAAA GTGAGGATAGAGGGTGAGTGTAGACAAATACGGAAGGAGTGAGAGGACAA AGAACAACTATACGCGCCTCGCCAAAGCGTTTCTCGCATTGTCTTAACAC ACACAACCCGCCCTCCTTCCCCTGAACTTCTTCTATACATGCCCACACAG AACAAAGAGAAAGGACGGGCACATCCAACTGCCACTTCGCCACCTGCCAT GGCTGCTCGTTCCCCTCCTCGTTCCCTTTCCCCATCCATCCCCTCCCGCG GCTCCCGTCGCCTCCCTATCTACACGCAACTCGCCGCACTCCCCGGTCTC CCTTCTCCCTTCCCTCCTTCTTCCATCCCTCCCTTCATCCCGACACTCAT TCCCATCCGTATCGACGTGGATATTGGCGGCATTCGTGTGATCGACTCCT TCTCCATCGATCCGCATGACTCCTCCCTCACTCCTGAGCAATGGGCAAGG CAATTGTGTGTGGATTTAGAGCTACCGGCCCCGCAAGAGTTTGAGCGACG CATCGCTCACAGTATAAGAAAACAGCTCGTCACCTACGCACATGATGTAG CCCTCCTCTCCCCCATCTACACCTCCACCTCATCGTCCCCATCGTCGTCC CCTTCCCACCCGCCGGCATCACAAGTACAACCACCAGAACCAGTAAGAGG ACACCTCTGCCCCATCCTCCTCAATGTCCGCGGGCCAGGCGGTCTAACCT ACAAAGAAATCATTGAATGGGACGTTTTTGACCCTCTCAATTCCCCAGAA CTCCTCGCCATGCACACGGTGGCCGACTTAGGCCTCCCCCCCTCCTTCGA ACCCGCCATCGCCCTCTCTGTTCGTGAGCAGGTTCTGAACTTTCGATTCA TGCTCCGCACGGGGCGTCCACCCTCAGTACTTGCAGAAGCAGAGATCCTC ACGTGGGGTATGGACAACACAACCCCCCTCCTTCGCTCCCTCCCTCCCTC TCTTCCTCCCTCCGTCGTGAAGAGTGAGGAGGAGGTAGGGGTGGCAGTGT ACGAGGGAGGATTGGATGAGAGGGTAAGATTTGCCGCAGATTTCTTGAGG CTAGCGCAGCCACGGAGGCAAGAACAGCAGCAGCAGCAACGACTGTATGC CGCGGTAGGAATGGGAGGAGGGGAGGGAAGGGACGGAGAAAGGGGACAAG CACATTCACTTCAGCTGCAGCAGCAGCATCAGCAGCATCAATCGACCGTA TCGCAGGCACACGCAAGAGGGAGGGAGGGAGGGAAGGAAGGAGGTGGCAC TGCGCAACAACAGTTTGATGAATATTGGAAGGGTCTGACACTTGAGCAAC AGCAACAATACACGGCGTGGTATTACTCATCTAGAGAAGGAGGAGGTGGA AGAGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGC ACGGCAGGCATTACGCTGAAAGTGAAATAGTGGAGGAAGAGACGGAGAAA AAAGAGGGGGGAGGAGGAGGAGGGACAGGAGGAAGAGGGGGGAGGGGGAG GCAAATCCCCACCCATAAGGTGCGGCGAGAAAGAGAAAGAGGCAAGCGAG TACGCGAGATTACGTCAAACGTAATGCAAAGGAATAATGAACACGTGTAT GTTATGTA back to topprotein sequence of NO21G00600.1 >NO21G00600.1-protein ID=NO21G00600.1-protein|Name=NO21G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp MPTQNKEKGRAHPTATSPPAMAARSPPRSLSPSIPSRGSRRLPIYTQLAA LPGLPSPFPPSSIPPFIPTLIPIRIDVDIGGIRVIDSFSIDPHDSSLTPE QWARQLCVDLELPAPQEFERRIAHSIRKQLVTYAHDVALLSPIYTSTSSS PSSSPSHPPASQVQPPEPVRGHLCPILLNVRGPGGLTYKEIIEWDVFDPL NSPELLAMHTVADLGLPPSFEPAIALSVREQVLNFRFMLRTGRPPSVLAE AEILTWGMDNTTPLLRSLPPSLPPSVVKSEEEVGVAVYEGGLDERVRFAA DFLRLAQPRRQEQQQQQRLYAAVGMGGGEGRDGERGQAHSLQLQQQHQQH QSTVSQAHARGREGGKEGGGTAQQQFDEYWKGLTLEQQQQYTAWYYSSRE GGGGRGGGGGGGGGGGGGGGARQALR* back to topmRNA from alignment at chr21:211935..215941+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G00600.1 ID=NO21G00600.1|Name=NO21G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=4007bp|location=Sequence derived from alignment at chr21:211935..215941+ (Nannochloropsis oceanica) CCTCCCTCCCCCTCCCTCCCCCTCTTCTCCACCTCTTCCTCTCCTGCCTT
CCTCTTCCACCACCACCCTCTTCCCTCCGCTGCCATCACCACCAGAGACG
TCAATACTACCAGTATCACGATCAAAGGTTTGAACCGACACACGCTCCCA
TCCCTGCCCGACAAAAAAATGTTCTCTTGAAAGAGATGGAGGTGTCACGC
TGGCCTTACACACACATTCATGTGTTTGTCGTACTCCTCTTGCCCCTGAC
AGACAGCGGGGGCAGCACACAGGGAGGGAACGAGGGAGGAACCGCAGGAG
GAGGGAGAGGCAGTTTGTTTGCCAGGCCGACCCTTCCGGCGGCGTGGTCA
AGTACGACGCAGAGAGAGCGGAGGCAGAGTGTGCCGAAGATGACGTGATT
GCTCAGGTACCACCAGTCCCTCTCTCCCTCCCTTCCCCCATCCCCTAGCA
CGATGAGTTAAGTCCGGTTGGGATTCCCATCTTCGGAAGGGGATGAGAGC
AGGTCGGCCAATGGCAGCGTCAGCAGCCCCTCCTCCTTCCCTCTCTCGTC
CTCCTGTCCTCCCACCTCAAACAAGCGTTCTCGCAAGTGGAAGAGAAGGG
ACGGAAGCAGGAGGCCGCCGCCGCCGCTGCTGCTGCTGCTGTTGCTGATG
GTAGCAGCTTCCTGAAAATGAGAAGGAGGAAGATGGCAGATGAAACTATC
AGCAGCATCGACGTCACACAAGTCCGAGGAAGGGGAGGAGGACGAGGAGA
AAACGGGGCTATCGCGCAAGGCCCAAGCACGGAAAGAGTCGAATGCGTGA
CTGGGAGAAAGAGAGTCGATGACCCCAAGCCAGTTGCTACTACTGCTGCT
ACTGCTGCTGCTACTGCAATTACTCGAGAAGACGGGCACTCCACAGATGC
GAAGGTCAAAGATGGGCAAGGCCAGGGAGGAGGCAGGGAGATAGGAAGGG
AAAGATGAAGGGGGAGGTTGGAGGGCGCGCATGCTCCACTGGACCTGGGA
GGCAAGGCGCGTGCTGTCGTAGCTTTTGATGGTCAGGATGGAGGGGAGGG
AGGGAGGGAGGGAGGGGTCGTTCGCTGTGGATGGAGGGGCATTGAAATCG
AGGCCGAAAAGCGTAGGTTCTGCTGCTGCTGCTGGTGCTGCTGCTATGGC
TGCGGTTGCTTGGGTGTGATGTCTTCCCAAAATTTGTCCTGGGTACAGCT
TGTCGTTGAAGGTTGTGGAGGAAGAGGAGGAGCTGGAGTATGAGGCGGGG
AAGGAGGAGGAGGAAGGGGAGAGGCCCAGAAAGCCTTCCAATAAATCCAA
CTCGTCGGCCAGCAAGGCAGCAGGGCTGTTACCAATACCACTGATGCTGC
TGCTGCTGCTTCCCGGAACGATGACATTTAAAAATAGCATTGAGGAGGGT
GTAGAAGAAGAAGACTAAGAGGAGGAAGATGATGAACCATTGAACAACAC
CACCGGTGCCAAAGACAAGGAAACCATCTCGTCTGACGCATTTTCCACTC
CTTCTCCTTCCTGCCCTCCCTCTTCCCCTGCGGCCCTTTGAAATCCCGGA
GATAAAAACACATTGCCTTGAGCAAGATTACAAGCATCGAGCTCCGCGTT
TAGATAATCACTCCCTACCCTCGTATTCCTCCGCCGCCGCGATTCCTCCT
TTTCTTCCGCCCCCTTGGTCATGTCTTCCGCACTTATATCTTCTTCGTCT
GTCCCCTGCCCGTTGACCGCCTCACCATCATGAACATCGCATCCCTGTAA
AGAATTAGGATCCAGCATTGACGCGCTGAGGTAGGAAAGCACGCTGTCAC
TATCAGCAGCAGTAGTGGCCGGCGTCGTCACTCTTCGCGCACAGTCTTTG
ACCACCAACCTGTCCCCTTGTGTGTCGAGCAAGACATTCCTCAGCACCGT
GCCTGTCTCTGAAGCAGTCGAAATTTTTACTGACAGAGAGTCTAGGGCGT
AGTAGTAGCGGCCAAAGATCTTCAAGGGCAAGGAGAAAGAGGCAGAGGCA
GCCGTAGTACTCGCGGGGGGGCGGGGTGACGGTGGAGAAGCGACAGTTTA
GGGCTCCAGGGGCTGCCGATGCCACCTCCGGTTCCTGTAGCTGCTTCCGT
CATGAAAAGGATGAGGAAAATTTCGACCCGTGAGTGGGGCTGGATGAAAA
GTGAGGATAGAGGGTGAGTGTAGACAAATACGGAAGGAGTGAGAGGACAA
AGAACAACTATACGCGCCTCGCCAAAGCGTTTCTCGCATTGTCTTAACAC
ACACAACCCGCCCTCCTTCCCCTGAACTTCTTCTATACATGCCCACACAG
AACAAAGAGAAAGGACGGGCACATCCAACTGCCACTTCGCCACCTGCCAT
GGCTGCTCGTTCCCCTCCTCGTTCCCTTTCCCCATCCATCCCCTCCCGCG
GCTCCCGTCGCCTCCCTATCTACACGCAACTCGCCGCACTCCCCGGTCTC
CCTTCTCCCTTCCCTCCTTCTTCCATCCCTCCCTTCATCCCGACACTCAT
TCCCATCCGTATCGACGTGGATATTGGCGGCATTCGTGTGATCGACTCCT
TCTCCATCGATCCGCATGACTCCTCCCTCACTCCTGAGCAATGGGCAAGG
CAATTGTGTGTGGATTTAGAGCTACCGGCCCCGCAAGAGTTTGAGCGACG
CATCGCTCACAGTATAAGGTATGTAAATATACGCGTGGGCAGATGGTGGA
GTGATGAAGGGATGGGAGGATGCCAGAGAGCGGGAGAGTGGAAAAGGAAT
GGCCAGCAACCCTGATTTTTAACCTCTCACACCCCTCCCCTGCCGTCCTT
CGGGCACTCTACCCATCAATCACAGAAAACAGCTCGTCACCTACGCACAT
GATGTAGCCCTCCTCTCCCCCATCTACACCTCCACCTCATCGTCCCCATC
GTCGTCCCCTTCCCACCCGCCGGCATCACAAGTACAACCACCAGAACCAG
TAAGAGGACACCTCTGCCCCATCCTCCTCAATGTCCGCGGGCCAGGCGGT
CTAACCTACAAAGAAATCATTGAATGGGACGTTTTTGACCCTCTCAATTC
CCCAGAACTCCTCGCCATGCACACGGTGGCCGACTTAGGTATATGAAAAG
CAAGCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCGCCTTCCCATG
TTTTCTACCCACCTCCCTCCTTCCCTCCAGGCCTCCCCCCCTCCTTCGAA
CCCGCCATCGCCCTCTCTGTTCGTGAGCAGGTTCTGAACTTTCGATTCAT
GCTCCGCACGGGGCGTCCACCCTCAGTACTTGCAGAAGCAGAGATCCTCA
CGTGGGGTATGGACAACACAACCCCCCTCCTTCGCTCCCTCCCTCCCTCT
CTTCCTCCCTCCGTCGTGAAGAGTGAGGAGGAGGTAGGGGTGGCAGTGTA
CGAGGGAGGATTGGATGAGAGGGTAAGATTTGCCGCAGATTTCTTGAGGC
TAGCGCAGCCACGGAGGCAAGAACAGCAGCAGCAGCAACGACTGTATGCC
GCGGTAGGAATGGGAGGAGGGGAGGGAAGGGACGGAGAAAGGGGACAAGC
ACATTCACTTCAGCTGCAGCAGCAGCATCAGCAGCATCAATCGACCGTAT
CGCAGGCACACGCAAGAGGGAGGGAGGGAGGGAAGGAAGGAGGTGGCACT
GCGCAACAACAGTTTGATGAATATTGGAAGGGTCTGACACTTGAGCAACA
GCAACAATACACGGCGTGGTATTACTCATCTAGAGAAGGAGGAGGTGGAA
GAGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCA
CGGCAGGCATTACGCTGAAAGTGAAATAGTGGAGGAAGAGACGGAGAAAA
AAGAGGGGGGAGGAGGAGGAGGGACAGGAGGAAGAGGGGGGAGGGGGAGG
CAAATCCCCACCCATAAGGTGCGGCGAGAAAGAGAAAGAGGCAAGCGAGT
ACGCGAGATTACGTCAAACGTAATGCAAAGGAATAATGAACACGTGTATG
TTATGTA back to topCoding sequence (CDS) from alignment at chr21:211935..215941+ >NO21G00600.1 ID=NO21G00600.1|Name=NO21G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr21:211935..215941+ (Nannochloropsis oceanica) ATGCCCACACAGAACAAAGAGAAAGGACGGGCACATCCAACTGCCACTTC GCCACCTGCCATGGCTGCTCGTTCCCCTCCTCGTTCCCTTTCCCCATCCA TCCCCTCCCGCGGCTCCCGTCGCCTCCCTATCTACACGCAACTCGCCGCA CTCCCCGGTCTCCCTTCTCCCTTCCCTCCTTCTTCCATCCCTCCCTTCAT CCCGACACTCATTCCCATCCGTATCGACGTGGATATTGGCGGCATTCGTG TGATCGACTCCTTCTCCATCGATCCGCATGACTCCTCCCTCACTCCTGAG CAATGGGCAAGGCAATTGTGTGTGGATTTAGAGCTACCGGCCCCGCAAGA GTTTGAGCGACGCATCGCTCACAGTATAAGAAAACAGCTCGTCACCTACG CACATGATGTAGCCCTCCTCTCCCCCATCTACACCTCCACCTCATCGTCC CCATCGTCGTCCCCTTCCCACCCGCCGGCATCACAAGTACAACCACCAGA ACCAGTAAGAGGACACCTCTGCCCCATCCTCCTCAATGTCCGCGGGCCAG GCGGTCTAACCTACAAAGAAATCATTGAATGGGACGTTTTTGACCCTCTC AATTCCCCAGAACTCCTCGCCATGCACACGGTGGCCGACTTAGGCCTCCC CCCCTCCTTCGAACCCGCCATCGCCCTCTCTGTTCGTGAGCAGGTTCTGA ACTTTCGATTCATGCTCCGCACGGGGCGTCCACCCTCAGTACTTGCAGAA GCAGAGATCCTCACGTGGGGTATGGACAACACAACCCCCCTCCTTCGCTC CCTCCCTCCCTCTCTTCCTCCCTCCGTCGTGAAGAGTGAGGAGGAGGTAG GGGTGGCAGTGTACGAGGGAGGATTGGATGAGAGGGTAAGATTTGCCGCA GATTTCTTGAGGCTAGCGCAGCCACGGAGGCAAGAACAGCAGCAGCAGCA ACGACTGTATGCCGCGGTAGGAATGGGAGGAGGGGAGGGAAGGGACGGAG AAAGGGGACAAGCACATTCACTTCAGCTGCAGCAGCAGCATCAGCAGCAT CAATCGACCGTATCGCAGGCACACGCAAGAGGGAGGGAGGGAGGGAAGGA AGGAGGTGGCACTGCGCAACAACAGTTTGATGAATATTGGAAGGGTCTGA CACTTGAGCAACAGCAACAATACACGGCGTGGTATTACTCATCTAGAGAA GGAGGAGGTGGAAGAGGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGCACGGCAGGCATTACGCTGA back to top
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