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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr21 | genome | chr21:199846..203695 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00580.1 vs.
Match: EWM22556.1 (Protein of unknown function DUF599 [Nannochloropsis gaditana]) HSP 1 Score: 404.1 bits (1037), Expect = 5.600e-109 Identity = 217/383 (56.66%), Postives = 273/383 (71.28%), Query Frame = 0
Query: 36 MLDPSGAHRRNSPVPAPASVPFAYFDSSLSPPGPSMERPGPPSAPSVANLPLPTTVHRITSSQALPPASSRTLELNKYSRGRRRREVLIFVFPLIFALIPVVLLMFSSPHA---VHFEATTHIPPIVCFLVIPLYHIYLFAFRSRGKASLPFFGNIRVHWAMEMFNTGNIAAINSMRDFSKITMFLAANSTLAASILVTFAYQVFSRCPNMSLSGCSSETLYLTAQLVVLIVNFFFIIIHMLMATRFALNVEFMLNTKEIGGRLLRPEAVAAVLSRANLYYGVGLRQTYYSIPLFAWLLGPWSLVGVTVIYLAFVYYIESVDKFLHTVNHVIGESDGPTAYNSSTTTDDRNGNGNNNSSSNSGSNSNGIGSNAGLAGGRDGGR 416
M DPS +R +P P + FA S RP ++ + H IT Q LP SS TL LNK R+ RE+L+F+FP++FALIPVV ++FSSPHA + F+ TTH+PPI+CF+VIP+YHIY+FA+R +GKASLPFFGNIRVHW +E NTG +A +N++RDF K+++FLAAN+TLAASI+VTFAYQ+F+RCPN SLSGC + LYL AQLVVLIVNFFF+IIHMLMATRF +N EFMLN KE+GGR LRPEAVA+VLSRANLYYG+GLRQTYYSIPLF+WLLGPW+LVG+TV+YL F YY+ES + FLH NHVIGE++G + +N+ + G G G GG++GG+
Sbjct: 1 MTDPSVNNRGQTPPP----LSFALH---------SPHRPNNGASHHQTSARHDDIFHHITG-QELPAPSSSTLRLNKPLVRRKHREILVFIFPIVFALIPVVFIIFSSPHAGSRISFDLTTHVPPIICFIVIPMYHIYMFAYRGKGKASLPFFGNIRVHWVLENCNTGELAPLNTLRDFGKVSLFLAANATLAASIIVTFAYQIFNRCPNQSLSGCGPDNLYLVAQLVVLIVNFFFVIIHMLMATRFIMNCEFMLNVKEVGGRPLRPEAVASVLSRANLYYGIGLRQTYYSIPLFSWLLGPWTLVGMTVLYLGFAYYVESTNAFLHAANHVIGETEGASVFNNDGAPEGLKEGGKEG------------GKEGGREGGKEGGK 357
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G00580.1 ID=NO21G00580.1|Name=NO21G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2841bp ATGGAGCACAGTGGTGGCTTTGTACCATCAGAGGTCCGCAAAGCAACTCC TTCTACGACCGAGCCTCTTCCTCATCGACGTTCCCCTTCCCCTTGCCTCC GTCCCATGCTCGACCCATCTGGCGCACACCGACGCAATTCTCCAGTGCCT GCTCCCGCTTCTGTTCCATTTGCGTATTTTGATTCTTCCTTATCCCCGCC TGGTCCTTCCATGGAGCGTCCTGGCCCACCCAGCGCTCCCTCTGTTGCCA ACCTCCCCCTCCCCACCACCGTCCACCGGATCACGTCCAGCCAAGCCCTT CCCCCTGCCTCCAGTCGTACCTTAGAACTGAACAAATACTCCCGCGGGCG GAGACGAAGAGAAGTCTTAATCTTTGTCTTTCCGCTCATCTTTGCACTGA TCCCTGTAGTCCTCCTCATGTTCTCCTCCCCCCACGCGGTTCACTTTGAA GCCACCACTCACATCCCGCCCATTGTTTGCTTCCTCGTCATCCCGCTTTA TCACATTTATTTATTTGCCTTTCGATCGAGGGGTAAGGCGTCCTTGCCCT TCTTTGGAAACATCCGGGTGCATTGGGCCATGGAAATGTTCAACACCGGT AATATTGCCGCCATTAACTCCATGCGAGACTTCAGTAAGATTACGATGTT TCTCGCAGCCAACAGCACCCTGGCCGCCTCCATCCTCGTCACCTTTGCCT ATCAGGTGTTCAGCCGGTGCCCGAACATGTCGCTGTCGGGGTGTAGCTCC GAAACCCTCTACTTGACTGCGCAGCTGGTGGTCCTGATCGTGAACTTCTT CTTCATCATCATCCATATGCTTATGGCCACGCGCTTTGCTCTAAACGTCG AGTTTATGTTAAACACCAAAGAGATAGGTGGCAGACTGCTCAGGCCTGAA GCAGTGGCCGCCGTTTTGTCTCGGGCCAACCTGTACTACGGCGTGGGCCT CCGTCAAACGTATTATTCTATTCCTCTCTTTGCCTGGCTCCTCGGCCCTT GGTCTTTGGTGGGGGTTACAGTTATCTACCTAGCGTTCGTGTACTATATT GAGAGCGTGGACAAATTTCTTCACACGGTGAATCACGTCATCGGCGAGTC GGATGGCCCTACGGCCTACAACAGCAGTACCACCACCGATGACAGAAATG GCAACGGCAATAACAACAGCAGTAGCAACAGCGGTAGCAACAGCAACGGT ATCGGTAGCAATGCTGGGTTGGCGGGAGGGAGGGACGGAGGGAGGGCTTG TGAAGTGCGCGTCGTTGAGAGACCTGCTGATGTGTGATGTTCCCTAAGGT TACTGGACGGGTAGGAAAAGGGGAAGGAGCAGGAAAAGAAAGAAGGAGGG CTGCTCAGAGAGGAGGGCAGGGAGGAGGAAAAATAGAAAAAAGACAGATG GAAAAGAAAAAATGGAAAAGAAAACAAACGAATTGGTTTGTTTGACGCAA ACACCTTTCTGAGAGGTCTCAATGATATCCATCCTAATGAGACGATGCTT TTAATTCGTAGACCTCAGGTCACACGCCGCGCCCTCTTCTCGTTTTTGTG GAGCATCAAATTTACCAATATGACCATGCTTTTATTTATACATTTTTTTT CTTTTTTTATATTTATACATACACTCTGATCTAACTACAGTGGGCAAGAC GCAGTAGACTGGCCATTAAGAGAAGCAGCATTGACAAGTGAAGGCTAAGA GCGAATGCAGTGGAGGCTGAGGAGCGAGTGAAAGTGGATGTGATTAAGGC CGTTACCCATTATCGTGTGAGTAAGGGCAAATGTAATGGTCACAATAGTA GGAGAAGTAGTAGCAGTAGCAGCGGCGGTAAAAAGGAGAAGGAATTCGAC TGTGACAGCAAAAGCCGGCTCTACTGAATGCAGGCATCTGAGCTTTTTCA AAGGATACCTTGGCAAGCGCAGCAGATCCCAGAGACCAAGAAATAGAATG AAGCCTTCGCCTACACCTTAAGCTGCACAATGTGATCGCTCGTCTGCTTA ATGGAAAGATATTGGCTTTCCCCAGTAGCTTCTTGGCTTCTTTATGGATT ACTTGATCGATTTTCTTGCACTGACACGTACAGTTATGGCTTCATATACA CACACACACACACACACACACACACACACACACACGTACATGCACACACA CACACACGTACATACACATATGCATGATTACACATTCATTCCCTCGCCCT CTTTTCTCACCAAGGTTTGTGCTTCAATTTGATCTTAATCTCACAGGCTT CCTTTCCTATGCCTTTCAACCTCTCCTCCACCCACGCGTACCGATCTAGA TCCTTCCTTGTCCGGAGCGGCCGCAAAGACAATTTGTCCAATTCGTCCTT TAAACGCATGCGCTCAATGTTCAGGTGCATCAAGGCATCTTCCAGAGGCG TGAACACATCAGATTGTAGGCCAGAAGAGTAATCCGTGGCAAAGGGAGGG AGAAAGGGAGGGAGGGAGGACGACGCTGGGTCTGGGCGGATCGAGGGTGT GGGTCGGGTAGAAGGAAAAAATGAGTCGTGCTGACACGGGTGGGAAAAGG GGTGGTTGCGATCACCATCTCCTTCCTGCCGTGCACGCTGGAGAGCACAG AGCGGGAGAACAGCTTCAGGTTCTTCGTCCCCTCCTCCGCCGCCTTGCCC TTCCCCCACTTTTTCCTCCTCATAGGGAGGGGGGGGAGAGGAAGGATAGT AGGATGAGACGTCCCGCTCTTTATAATACATGGGCGGCGGTGGTGGAGGT CGAAACTGCTGCTGCGGCTGCTGTAGTTGTTGTTGTGGCTGTTGTTGTTG TTGTGGCTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTT back to topprotein sequence of NO21G00580.1 >NO21G00580.1-protein ID=NO21G00580.1-protein|Name=NO21G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp MEHSGGFVPSEVRKATPSTTEPLPHRRSPSPCLRPMLDPSGAHRRNSPVP APASVPFAYFDSSLSPPGPSMERPGPPSAPSVANLPLPTTVHRITSSQAL PPASSRTLELNKYSRGRRRREVLIFVFPLIFALIPVVLLMFSSPHAVHFE ATTHIPPIVCFLVIPLYHIYLFAFRSRGKASLPFFGNIRVHWAMEMFNTG NIAAINSMRDFSKITMFLAANSTLAASILVTFAYQVFSRCPNMSLSGCSS ETLYLTAQLVVLIVNFFFIIIHMLMATRFALNVEFMLNTKEIGGRLLRPE AVAAVLSRANLYYGVGLRQTYYSIPLFAWLLGPWSLVGVTVIYLAFVYYI ESVDKFLHTVNHVIGESDGPTAYNSSTTTDDRNGNGNNNSSSNSGSNSNG IGSNAGLAGGRDGGRACEVRVVERPADV* back to topmRNA from alignment at chr21:199846..203695- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G00580.1 ID=NO21G00580.1|Name=NO21G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=3850bp|location=Sequence derived from alignment at chr21:199846..203695- (Nannochloropsis oceanica) ATGGAGCACAGTGGTGGCTTTGTACCATCAGAGGTCCGCAAAGCAACTCC
TTCTACGACCGAGCCTCTTCCTCATCGACGTTCCCCTTCCCCTTGCCTCC
GTCCCATGCTCGACCCATCTGGCGCACACCGACGCAATTCTCCAGTGCCT
GCTCCCGCTTCTGTTCCATTTGCGTATTTTGATTCTTCCTTATCCCCGCC
TGGTCCTTCCATGGAGCGTCCTGGCCCACCCAGCGCTCCCTCTGTTGCCA
ACCTCCCCCTCCCCACCACCGTCCACCGGATCACGTCCAGCCAAGCCCTT
CCCCCTGCCTCCAGTCGTACCTTAGAACTGAACAAATACTCCCGCGGGCG
GAGACGAAGAGAAGTCTTAATCTTTGTCTTTCCGCTCATCTTTGCACTGA
TCCCTGTAGTCCTCCTCATGTTCTCCTCCCCCCACGCGGTTCACTTTGAA
GCCACCACTCACATCCCGCCCATTGTTTGCTTCCTCGTCATCCCGCTTTA
TCACATTTATTTATTTGCCTTTCGATCGAGGGGTAAGGCGTCCTTGCCCT
TCTTTGGAAACATCCGGGGTACGTACCCAAATGTTATGGATTGAATGTCT
TTTCGGGATTCCACTTCTTCGGAATCCCGACAAAACAAAGATAAGAACGG
AAAGGGGATGGGTTTATAAGGAAGGTGGAGGGAGGAACGAGGGGGTCAGC
ATAAGGATGAGGAAGAAGGTTTCCTTTCTAATCATACAACAATCATGCCC
TCCCTCCCTCCCCCGCTCCCTCTCTTTCTCCCTCCCTCCCTCCCTCCTTC
AGTGCATTGGGCCATGGAAATGTTCAACACCGGTAATATTGCCGCCATTA
ACTCCATGCGAGACTTCAGTAAGATTACGATGTTTCTCGCAGCCAACAGC
ACCCTGGCCGCCTCCATCCTCGTCACCTTTGCCTATCAGGTAGGGAGAGA
GGGAGAAAGGAAATGGTCAATACAATTAAATGACTTTCCTACCACAAACC
AGTGTATGGTATCGAAATAAAGCATTCACAAGGCTCATGGACTAATAAAC
GTCGTCTACCCTGGCCTTCCCTCAACCCCTCGTTTACCAGGTGTTCAGCC
GGTGCCCGAACATGTCGCTGTCGGGGTGTAGCTCCGAAACCCTCTACTTG
ACTGCGCAGGTAGGTATTTAAATAAGGGCTTAGAGGGAAAAGTAAACAAG
GCCTCTGTAAGTCAAGTAGTGGTGCACTGAGGGACAGGAAGACCTCTCGT
ACTCATCCCTCCATGCCCCTCTCCCTTCCTCCAGCTGGTGGTCCTGATCG
TGAACTTCTTCTTCATCATCATCCATATGCTTATGGCCACGCGCTTTGCT
CTAAACGTCGAGTTTATGTTAAACACCAAAGAGATAGGTGGCAGACTGCT
CAGGCCTGAAGCAGGTACGCAACCTTTCTGTCCCTCCCTCCCTCCCTCAT
TCCTCACTTCCCTCCTCCCTTCTGGTGATTATTTTGGCCCAAAATGTGGA
GATGTGAGAGAACGTTGCAACAGGATGGAGCCTGGTAGAGGGGAGAAATA
CGGGAGGGATATAATGCATTCATAAAATGAATAAAATTCAAATAATTTAA
TTTAACCGTTCTTTTTCTATGCACACGCCCACTCCCAGTGGCCGCCGTTT
TGTCTCGGGCCAACCTGTACTACGGCGTGGGCCTCCGTCAAACGTATTAT
TCTATTCCTCTCTTTGCCTGGTGAGAAGGAAGGGGAGGGAGGGAGGGAGG
AAGGGAGGGAGGAGTGTGTGCTTGATGTGTCATGTGCTAGAATACGGATA
CGTCACAAGCTCAACACCTTCTCCCCCTCATTTCCTTCCTCCCGCCCTCC
CTCCCGCCCACCCCCTACCTCAGGCTCCTCGGCCCTTGGTCTTTGGTGGG
GGTTACAGTTATCTACCTAGCGTTCGTGTACTATATTGAGAGCGTGGACA
AATTTCTTCACACGGTGAATCACGTCATCGGTGAGGATGGGCGGGAGGGC
GGGAGGGCGGGAGGGAGGGAGCGAGGGAGCGAGAGAACCCTAATCCTAAA
TACAATCTTTGACACGCAATTTATACATTCACACTTCTTGTCCTTCGTTA
AGGCGAGTCGGATGGCCCTACGGCCTACAACAGCAGTACCACCACCGATG
ACAGAAATGGCAACGGCAATAACAACAGCAGTAGCAACAGCGGTAGCAAC
AGCAACGGTATCGGTAGCAATGCTGGGTTGGCGGGAGGGAGGGACGGAGG
GAGGGCTTGTGAAGTGCGCGTCGTTGAGAGACCTGCTGATGTGTGATGTT
CCCTAAGGTTACTGGACGGGTAGGAAAAGGGGAAGGAGCAGGAAAAGAAA
GAAGGAGGGCTGCTCAGAGAGGAGGGCAGGGAGGAGGAAAAATAGAAAAA
AGACAGATGGAAAAGAAAAAATGGAAAAGAAAACAAACGAATTGGTTTGT
TTGACGCAAACACCTTTCTGAGAGGTCTCAATGATATCCATCCTAATGAG
ACGATGCTTTTAATTCGTAGACCTCAGGTCACACGCCGCGCCCTCTTCTC
GTTTTTGTGGAGCATCAAATTTACCAATATGACCATGCTTTTATTTATAC
ATTTTTTTTCTTTTTTTATATTTATACATACACTCTGATCTAACTACAGT
GGGCAAGACGCAGTAGACTGGCCATTAAGAGAAGCAGCATTGACAAGTGA
AGGCTAAGAGCGAATGCAGTGGAGGCTGAGGAGCGAGTGAAAGTGGATGT
GATTAAGGCCGTTACCCATTATCGTGTGAGTAAGGGCAAATGTAATGGTC
ACAATAGTAGGAGAAGTAGTAGCAGTAGCAGCGGCGGTAAAAAGGAGAAG
GAATTCGACTGTGACAGCAAAAGCCGGCTCTACTGAATGCAGGCATCTGA
GCTTTTTCAAAGGATACCTTGGCAAGCGCAGCAGATCCCAGAGACCAAGA
AATAGAATGAAGCCTTCGCCTACACCTTAAGCTGCACAATGTGATCGCTC
GTCTGCTTAATGGAAAGATATTGGCTTTCCCCAGTAGCTTCTTGGCTTCT
TTATGGATTACTTGATCGATTTTCTTGCACTGACACGTACAGTTATGGCT
TCATATACACACACACACACACACACACACACACACACACACACGTACAT
GCACACACACACACACGTACATACACATATGCATGATTACACATTCATTC
CCTCGCCCTCTTTTCTCACCAAGGTTTGTGCTTCAATTTGATCTTAATCT
CACAGGCTTCCTTTCCTATGCCTTTCAACCTCTCCTCCACCCACGCGTAC
CGATCTAGATCCTTCCTTGTCCGGAGCGGCCGCAAAGACAATTTGTCCAA
TTCGTCCTTTAAACGCATGCGCTCAATGTTCAGGTGCATCAAGGCATCTT
CCAGAGGCGTGAACACATCAGATTGTAGGCCAGAAGAGTAATCCGTGGCA
AAGGGAGGGAGAAAGGGAGGGAGGGAGGACGACGCTGGGTCTGGGCGGAT
CGAGGGTGTGGGTCGGGTAGAAGGAAAAAATGAGTCGTGCTGACACGGGT
GGGAAAAGGGGTGGTTGCGATCACCATCTCCTTCCTGCCGTGCACGCTGG
AGAGCACAGAGCGGGAGAACAGCTTCAGGTTCTTCGTCCCCTCCTCCGCC
GCCTTGCCCTTCCCCCACTTTTTCCTCCTCATAGGGAGGGGGGGGAGAGG
AAGGATAGTAGGATGAGACGTCCCGCTCTTTATAATACATGGGCGGCGGT
GGTGGAGGTCGAAACTGCTGCTGCGGCTGCTGTAGTTGTTGTTGTGGCTG
TTGTTGTTGTTGTGGCTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTT
back to topCoding sequence (CDS) from alignment at chr21:199846..203695- >NO21G00580.1 ID=NO21G00580.1|Name=NO21G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr21:199846..203695- (Nannochloropsis oceanica) ATGGAGCACAGTGGTGGCTTTGTACCATCAGAGGTCCGCAAAGCAACTCC TTCTACGACCGAGCCTCTTCCTCATCGACGTTCCCCTTCCCCTTGCCTCC GTCCCATGCTCGACCCATCTGGCGCACACCGACGCAATTCTCCAGTGCCT GCTCCCGCTTCTGTTCCATTTGCGTATTTTGATTCTTCCTTATCCCCGCC TGGTCCTTCCATGGAGCGTCCTGGCCCACCCAGCGCTCCCTCTGTTGCCA ACCTCCCCCTCCCCACCACCGTCCACCGGATCACGTCCAGCCAAGCCCTT CCCCCTGCCTCCAGTCGTACCTTAGAACTGAACAAATACTCCCGCGGGCG GAGACGAAGAGAAGTCTTAATCTTTGTCTTTCCGCTCATCTTTGCACTGA TCCCTGTAGTCCTCCTCATGTTCTCCTCCCCCCACGCGGTTCACTTTGAA GCCACCACTCACATCCCGCCCATTGTTTGCTTCCTCGTCATCCCGCTTTA TCACATTTATTTATTTGCCTTTCGATCGAGGGGTAAGGCGTCCTTGCCCT TCTTTGGAAACATCCGGGTGCATTGGGCCATGGAAATGTTCAACACCGGT AATATTGCCGCCATTAACTCCATGCGAGACTTCAGTAAGATTACGATGTT TCTCGCAGCCAACAGCACCCTGGCCGCCTCCATCCTCGTCACCTTTGCCT ATCAGGTGTTCAGCCGGTGCCCGAACATGTCGCTGTCGGGGTGTAGCTCC GAAACCCTCTACTTGACTGCGCAGCTGGTGGTCCTGATCGTGAACTTCTT CTTCATCATCATCCATATGCTTATGGCCACGCGCTTTGCTCTAAACGTCG AGTTTATGTTAAACACCAAAGAGATAGGTGGCAGACTGCTCAGGCCTGAA GCAGTGGCCGCCGTTTTGTCTCGGGCCAACCTGTACTACGGCGTGGGCCT CCGTCAAACGTATTATTCTATTCCTCTCTTTGCCTGGCTCCTCGGCCCTT GGTCTTTGGTGGGGGTTACAGTTATCTACCTAGCGTTCGTGTACTATATT GAGAGCGTGGACAAATTTCTTCACACGGTGAATCACGTCATCGGCGAGTC GGATGGCCCTACGGCCTACAACAGCAGTACCACCACCGATGACAGAAATG GCAACGGCAATAACAACAGCAGTAGCAACAGCGGTAGCAACAGCAACGGT ATCGGTAGCAATGCTGGGTTGGCGGGAGGGAGGGACGGAGGGAGGGCTTG TGAAGTGCGCGTCGTTGAGAGACCTGCTGATGTGTGA back to top
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