Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:187310..190581 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00540.1 vs.
Match: XP_002908687.1 (periodic tryptophan protein 2 [Phytophthora infestans T30-4]; EEY57501.1 periodic tryptophan protein 2 [Phytophthora infestans T30-4])
HSP 1 Score: 783.9 bits (2023), Expect = 5.400e-223
Identity = 441/920 (47.93%), Postives = 583/920 (63.37%), Query Frame = 0
Query: 1 MRFGYRLSRLSGAVHSGGNVIFSPDGNTLYSLVGNRVAAFDLVAHTCFTLPYEHAHPIRRLAISPDGRFLLTVDKGGYLFLVHLLRRIILCRMRLKRTHKVRDLVFSPDGQYFAITQERQFQVWRTPGAAREFAPFVLHRTYGSHSDDILSVAWSPCGQFLTTASKDLTVRVWSLHPLPPSIFVPATLSGHRDRVVCAFFSTTVPAA--------------ALPSEPLLALASEDGPPFS-----------TPADDSAMTFPSINGEQQARSPLSSLLLYSIAKDGFLYCWAYDEGTRAWSCQERQAFQKARRATVASASFHSSSSGNSSTSLLVVGFSDGVFGLYEIPTCQVIHTLSVSHGGLGTVALNKTGEWLALGCGPLGQLLVWEWQSETYVLKQQGHADAVNAVAFSPDGQSLVTGGEDAKVKLWSAGSGFSYATFTAHEAPISALAFLGSGQAILSASLDGTVRAHDLLRYRNFRTLTTPNPTQLLSLAVDPSGEVVCAGSNEPFEVYVWALQTGKLLEILPGHGGPVVALDFSPS---EPILASGSWDGTVKMWNVY--KKELIETHTHASDVLAVAFRPDGKELCVATLNGHLTFWDVAEGHQMRIIEGKRDIRGGRGLKDKVSSASSAASKHFTSVAYTADGMCVIAGGRSKFVCIYHVESKALVRKFQLSHDKNLDGVLDKLDSRKVGSDGLPMEEEE---EESDEEGGRGEEGLPGAKRGVNLSKRTTRAEVRSSCVRFSPTGREWAAATPQGLLVYGLEEDMVFNPLELDEAATPAAVTRKIKEDNIAMALVLACQLNEEKIMLQALEAAPPTFDALLLLARALPSSL-SPRLLALLAKHLPASPHLSFLLSFSLALLQTHGGFLRRDPSRHA---PHLRALQRAILKVQEDIGRHAESSTALLDLL 884
M+F Y+ L G+V+S GNV F+PDGN++ S VGNR+ FDLV +T T +E + R+A+S D R LL VD+ G LV+L R +L R K++ V+ L FSPD +Y A+ + Q+WRTPG REFAPFVLHRTY H D++SV+WS +F T ++DL+ RV+S+ P P F P TLSGHRD VV AFF+ + LP +L SE+ + +D+S S +++ + L+ IA+ T+ ++CQ+ K A V +FHSS T +LVVGF +G FGLYE+P IHTLSV+ L TVA+N TGEWLA LGQLLVWEW+SETYVLKQQGH +NA ++SPDG+ L TG +DAK+KLW SGF Y TFT H AP++A+ F SGQA+LSASLDGTVRA DL RY+NFR LTTP PTQ LSLA+DPSG+VVCAGS +PF VYVW+LQTG+L ++L GH GPV +L FSPS EPILAS SWD TV++WN++ KK IE H +DVLAVAFRPDGK+L TLNG + WDV +G Q+ I+GKRDI GGR D +++A++ +KHFTSV Y+ADG+ ++AGGRSKFVCIY VE + L++KFQ+SH+ +LDG+L++L+S+ V GL E + ++S+ G + L GAKR V+ R EV S V FSPTGR WAAAT +GLL+YGL+E + F+P ELDE TP +T+ + A ALV+A LNEE ++ + +E P ++ L+A+ L + RLL LLAK + SPHL F L +SLA+L THG LR DPS A P LR+LQ++I + +D+ + + + L L
Sbjct: 1 MKFAYQFQHLCGSVYSQGNVTFTPDGNSVLSPVGNRITQFDLVNNTSRTFAFEARKNVERIAVSHDSRLLLAVDEDGRCLLVNLKRGAVLYRFHFKQS--VKALNFSPDNRYIAVAIGNKVQLWRTPGLVREFAPFVLHRTYAGHYADVVSVSWSHDSKFFVTGAEDLSARVFSVDPYPG--FKPLTLSGHRDVVVGAFFAEDDRSIFTVGRDGGAFEWKYKLPDVEMLERTSEESEDNEEEEKEENKDKESDSDESESEDESAGKKRKRKLSEEKELIPEIAR-----------ATKWYTCQKHVL--KMDFAKVLCCTFHSS------TGMLVVGFGNGTFGLYELPAFVNIHTLSVTQNELETVAVNATGEWLAFASRKLGQLLVWEWRSETYVLKQQGHYFDLNAASYSPDGRLLATGADDAKLKLWDTNSGFCYVTFTEHAAPVTAVQFAPSGQAVLSASLDGTVRAFDLNRYKNFRVLTTPEPTQFLSLALDPSGQVVCAGSMDPFNVYVWSLQTGRLTDVLSGHTGPVTSLSFSPSSSAEPILASSSWDHTVRLWNLFASKKSFIEPLAHPTDVLAVAFRPDGKQLASTTLNGAINIWDVKDGEQVGTIDGKRDIAGGRKEGDHITAANNQLTKHFTSVCYSADGLLLLAGGRSKFVCIYAVEPQILLKKFQISHNLSLDGILEQLNSKNVTESGLSKSELDAHLDDSEASGRNAGDSLVGAKRAVDPGSRRKNMEVLSKAVLFSPTGRAWAAATTEGLLIYGLDESLAFDPFELDEDITPETITQTLARREYARALVMALHLNEEPLIARCVEGVP--IASIPLVAQTLRGEMYLQRLLQLLAKRMERSPHLEFYLQWSLAVLNTHGQTLRDDPSSSATCLPTLRSLQKSIARHLQDLAKICDDNQFTLSYL 895
The following BLAST results are available for this feature:
BLAST of NO21G00540.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 5.40e-223 / Id = 47.93 Sequence XP_002908687.1
Match Name E-value Identity Description
XP_002908687.1 5.400e-223 47.93 periodic tryptophan protein 2 [Phytophthora infest... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G00540.1 ID=NO21G00540.1|Name=NO21G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3003bp back to top protein sequence of NO21G00540.1
>NO21G00540.1-protein ID=NO21G00540.1-protein|Name=NO21G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=895bp back to top mRNA from alignment at chr21:187310..190581-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00540.1 ID=NO21G00540.1|Name=NO21G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3272bp|location=Sequence derived from alignment at chr21:187310..190581- (Nannochloropsis oceanica)ATGCGCTTCGGGTATCGGCTTTCTCGT
CTCTCGGGAGCGGTGCACTCGGGGGGCAATGTGATCTTCTCCCCCGACGG
CAACACCCTCTACAGCTTGGTCGGGAATCGCGTGGCGGCCTTCGACCTGG
TAGCACACACCTGCTTCACTCTCCCCTACGAGCATGCTCACCCCATTCGT
CGGTTGGCTATCTCGCCTGATGGGCGGTTCCTTCTGACGGTGGATAAAGG
CGGTTACCTCTTCCTCGTTCATTTATTACGGCGTATCATCCTCTGTAGGA
TGCGGCTCAAACGAACCCACAAGGTCCGCGACCTCGTCTTTTCCCCAGAT
GGGCAATATTTTGCTATTACCCAAGAACGACAGTTCCAAGTATGGCGGAC
CCCCGGGGCTGCCCGGGAATTCGCGCCATTTGTTTTGCATCGGACGTATG
GTTCGCATAGTGACGATATTCTGAGTGTGGCCTGGTCGCCATGTGGACAG
TTTTTGACGACCGCGAGCAAGGACCTGACGGTACGCGTCTGGAGCTTGCA
TCCTTTGCCCCCTTCGATATTTGTACCTGCCACGCTGTCAGGACATCGTG
ACCGTGTGGTTTGTGCATTTTTTAGCACCACAGTTCCAGCGGCCGCGTTG
CCCTCTGAGCCTCTCCTCGCTCTCGCGTCCGAAGACGGACCTCCCTTCTC
GACTCCTGCGGACGACAGCGCCATGACTTTTCCTTCCATTAATGGAGAGC
AGCAAGCACGCTCCCCCCTCTCCTCCCTTCTCCTTTACTCAATCGCCAAA
GATGGGTTTCTCTACTGTTGGGCCTACGACGAAGGGACCCGTGCCTGGAG
CTGCCAGGAGCGTCAAGCGTTTCAAAAGGCGCGGCGGGCTACCGTTGCAT
CTGCCTCCTTCCACTCCTCCTCATCAGGCAACAGCAGTACTTCGTTGTTG
GTGGTGGGATTCTCAGACGGTGTATTTGGGCTGTACGAAATACCGACCTG
TCAGGTAATCCACACGTTGTCAGTATCCCATGGGGGACTAGGTACCGTAG
CGCTCAACAAAACAGGAGAATGGCTCGCGCTAGGCTGTGGTCCCCTGGGA
CAGCTGTTGGTGTGGGAGTGGCAGAGCGAGACGTATGTTCTGAAGCAACA
AGGACACGCAGACGCAGTTAATGCCGTGGCTTTTTCGCCAGATGGCCAAT
CGCTCGTGACAGGGGGGGAAGACGCGAAAGTGAAGCTTTGGAGCGCTGGA
AGCGGTTTTAGTTATGCCACCTTTACTGCGCACGAAGCCCCTATTAGCGC
ACTGGCGTTTTTGGGCTCGGGACAAGCGATTCTCTCGGCGTCGTTAGATG
GGACTGTCCGCGCGCATGATTTGTTGAGGTACCGAAACTTTAGGACCCTA
ACTACGCCGAATCCGACGCAGTTATTGAGTCTGGCGGTGGACCCAAGCGG
GGAGGTGGTGTGTGCCGGTTCAAATGAGCCGTTTGAG GTGAGAAGGAGGA
AGGCAGGGACATGAAAGTGTAGATGTGTTGCAGTCGTTTCGTTTTAGATG
GTCCGTACCGCTTTTCTTTCTTCTTCCTTATCTTCGTTCCTCCCTTCCTG
ATCAGGTCTATGTGTGGGCTCTCCAAACTGGCAAACTCTTAGAAATCCTT
CCAGGCCACGGCGGACCTGTCGTTGCCCTCGATTTCTCCCCTTCTGAGCC
CATTCTTGCATCGGGCTCATGGGATGGTACTGTCAAGATGTGGAACGTCT
ACAAGAAAG GTAAATTCTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTTCCTTCCTTCCTTCCTGCTAACAATGGCTTTTCATACTA
CCTTAGCCCTCTTGACCCTTCCTCCCGTATTCTTCACCCCCCAATTTCCT
TCAAAAACAGAACTCATCGAAACACACACCCACGCCTCGGACGTGCTCGC
CGTCGCTTTCCGCCCTGATGGAAAAGAGCTCTGCGTTGCCACACTTAACG
GTCATCTCACATTCTGGGATGTGGCCGAAGGGCACCAAATGAGGATAATT
GAAGGGAAGAGGGACATCAGGGGAGGGCGAGGGTTGAAGGACAAGGTATC
CTCTGCCTCCTCTGCTGCCAGCAAACATTTCACCTCCGTGGCGTACACGG
CGGATGGAATGTGTGTGATTGCTGGGGGGAGGAGTAAATTTGTGTGTATA
TACCATGTGGAGAGCAAGGCTTTAGTGAGGAAATTTCAATTGAGTCACGA
CAAAAATTTGGATGGAGTTTTGGATAAATTGGACTCAAGAAAGGTAGGGA
GTGATGGGCTGCCTATGGAGGAGGAGGAGGAGGAGTCTGATGAGGAGGGA
GGAAGGGGGGAGGAGGGACTACCAGGAGCGAAGAGGGGAGTGAACCTGTC
CAAAAGGACGACACGGGCGGAAGTGAGGTCGTCGTGTGTGAGATTTTCCC
CGACAGGGAGGGAGTGGGCGGCGGCTACCCCTCAGGGGTTGTTGGTGTAT
GGGTTGGAGGAGGACATGGTCTTCAACCCTTTAGAACTGGATGAGGCAGC
GACGCCTGCAGCCGTGACCAGAAAGATCAAGGAGGATAATATAGCAATGG
CTCTTGTCTTGGCCTGTCAATTGAATGAGGAGAAAATCATGCTCCAAGCT
CTCGAAGCCGCCCCTCCCACCTTTGACGCCCTCCTCCTCCTCGCCCGGGC
TCTACCTTCCTCCCTTTCTCCCCGTCTTTTGGCGCTGCTGGCAAAGCACC
TACCGGCTTCTCCACACCTGTCCTTTCTCCTCTCTTTTTCCCTGGCCCTG
CTTCAGACTCATGGAGGTTTTCTGCGCCGTGATCCCTCGAGGCATGCACC
TCATCTTCGGGCATTACAAAGAGCTATTTTGAAGGTGCAGGAGGATATAG
GGAGACACGCAGAGTCGTCGACGGCGTTGTTGGATCTGCTGGTGGCGGGA
GAGGAGGGGCGGGAGGAACCGATATAG back to top Coding sequence (CDS) from alignment at chr21:187310..190581-
>NO21G00540.1 ID=NO21G00540.1|Name=NO21G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=2685bp|location=Sequence derived from alignment at chr21:187310..190581- (Nannochloropsis oceanica) back to top