NO21G00430.1, NO21G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00430.1
Unique NameNO21G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1291
Alignment locationchr21:155810..157364 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:155810..157364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00430.1 vs.
Match: XP_009036044.1 (hypothetical protein AURANDRAFT_60034 [Aureococcus anophagefferens]; EGB08910.1 hypothetical protein AURANDRAFT_60034 [Aureococcus anophagefferens])

HSP 1 Score: 280.4 bits (716), Expect = 8.700e-72
Identity = 143/247 (57.89%), Postives = 178/247 (72.06%), Query Frame = 0 
Query:   20 GSRLPQTFDEEYNCYSFAFQDKTHLEGSDKIFLPPSALDTLARLHIDYPMLFQLTCRVSGKKTHCGVLEFSAAEGSCYLPYWMMQNLMLEEGGFLQVKNVSLPKCTFVKLRPQSVDFLEITNPRAVLERALRSFSCVTVGDQICIPHNEKFYHIEIRDVKPADAACIIETDCDVDFEAPVGYVEPGRNGGGREGGVAASTTSGGMITSRPLSGKGGYKEEHEAAAAAAAEMKKQASFSGRGARLDGK 267
            G R  + FDE+Y+C+S AF DK +LE  DK+ LP SA + LARL I+YPMLF+L  R +  +THCGVLEF+A EG+CY+P+WMMQNLMLEEGG L VKNVSLPK TFVK +PQS DFL+I+NPRAVLE+  R+FSC+TVGDQIC+P+N+K +++E+++VKP +AACIIE DC+VDF+APVGY EP      R    A S  S       PL      KE  EA A A    K   SF+G G+RLDGK
Sbjct:    4 GGRRNEVFDEQYHCFSGAFADKPNLEEGDKVLLPSSAFEQLARLQIEYPMLFEL--RSAKGRTHCGVLEFTAPEGNCYVPFWMMQNLMLEEGGVLSVKNVSLPKATFVKFKPQSTDFLDISNPRAVLEKQFRTFSCLTVGDQICLPYNDKRFYLEVQEVKPREAACIIECDCEVDFDAPVGYTEPDYASRSR----ATSEASSMPDLPAPLKALSAAKEA-EAKAKAEGNFK---SFAGAGSRLDGK 240
The following BLAST results are available for this feature:
BLAST of NO21G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009036044.18.700e-7257.89hypothetical protein AURANDRAFT_60034 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00430NO21G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00430.1NO21G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00430.1.cds1NO21G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00430.1.cds2NO21G00430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00430.1.cds3NO21G00430.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00430.1 ID=NO21G00430.1|Name=NO21G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1291bp
ACAGGCAAGTCTCTTCGCGTCAGCCTTCTCCTCTTTCATCGATTTTCATT
TCTGCGTCATCGCCAATCTCGCAAGAAAGAGGAAAATAATGGCAGCTTTC
TTCGGCGGAGGCGGGTACCACCAGGGCATGGGAGGATTGGGTGGCGGCTC
TCGTCTTCCTCAAACCTTCGACGAAGAATACAACTGCTACTCCTTTGCCT
TCCAAGACAAAACACATTTGGAGGGCAGCGATAAAATCTTTCTCCCTCCC
TCGGCCTTGGACACGTTGGCCCGCCTGCACATTGATTACCCGATGCTTTT
TCAACTCACATGCCGGGTGTCGGGGAAGAAGACGCATTGCGGCGTACTCG
AATTCTCCGCCGCGGAGGGTAGCTGTTACTTGCCCTATTGGATGATGCAG
AACCTGATGCTGGAGGAGGGTGGCTTCTTGCAGGTTAAGAATGTCTCTCT
CCCGAAATGCACCTTCGTCAAGCTCCGCCCACAGTCGGTGGACTTCCTCG
AGATCACCAATCCCCGTGCCGTCCTCGAGCGAGCCCTACGGTCCTTCAGT
TGTGTAACGGTCGGTGACCAGATCTGCATTCCCCACAACGAGAAATTCTA
CCATATCGAGATCCGTGATGTGAAGCCAGCGGACGCCGCCTGTATCATTG
AGACAGACTGTGACGTGGATTTTGAAGCCCCTGTGGGCTATGTGGAACCA
GGACGAAATGGAGGGGGGCGGGAAGGGGGAGTGGCGGCGAGCACAACCAG
CGGGGGGATGATCACATCGAGACCGTTGAGTGGGAAGGGAGGATACAAGG
AGGAGCATGAAGCAGCTGCTGCAGCAGCAGCGGAGATGAAGAAGCAGGCC
TCATTTTCAGGGAGGGGCGCCCGGCTGGACGGAAAGGCCCATGCAGGAGG
AGAGGGGGAGGGAGGGGAGGGTTTGGACGGGGGGGACTCTATGGACGTGT
CAGGAGAGGGTGGAGGAGGAGGAGGCGGGGAGGAAGGGCCAACTTCACCG
CCGGTGTTTTTGGGGAGAACCATTAGTGGACGAGCCTCTTTGTCGATGAC
TGAAGGGAGAGGTTCCTCCCTCATCAGCCAGACAGGAGGGGGGAGCATAA
GCTCAAGTTTGCGCGCGTCGTCTTCTGTTTCCTACGGCTCGTCTTCGTCC
TCGTCCTTGTCCTCCTCGACGGCAGCAGCAGGAGCAGCAGCAGGAGCAGG
AGGATACAAAAAGCCGGGGGCACTTGACAATAAATACAGTAGTAAAAAGG
GGTTTCGATCCTTTGCGGGCCCGGGGAATAAGCTGGCGTAG
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protein sequence of NO21G00430.1

>NO21G00430.1-protein ID=NO21G00430.1-protein|Name=NO21G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MAAFFGGGGYHQGMGGLGGGSRLPQTFDEEYNCYSFAFQDKTHLEGSDKI
FLPPSALDTLARLHIDYPMLFQLTCRVSGKKTHCGVLEFSAAEGSCYLPY
WMMQNLMLEEGGFLQVKNVSLPKCTFVKLRPQSVDFLEITNPRAVLERAL
RSFSCVTVGDQICIPHNEKFYHIEIRDVKPADAACIIETDCDVDFEAPVG
YVEPGRNGGGREGGVAASTTSGGMITSRPLSGKGGYKEEHEAAAAAAAEM
KKQASFSGRGARLDGKAHAGGEGEGGEGLDGGDSMDVSGEGGGGGGGEEG
PTSPPVFLGRTISGRASLSMTEGRGSSLISQTGGGSISSSLRASSSVSYG
SSSSSSLSSSTAAAGAAAGAGGYKKPGALDNKYSSKKGFRSFAGPGNKLA
*
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mRNA from alignment at chr21:155810..157364-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00430.1 ID=NO21G00430.1|Name=NO21G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp|location=Sequence derived from alignment at chr21:155810..157364- (Nannochloropsis oceanica)
ACAGGCAAGTCTCTTCGCGTCAGCCTTCTCCTCTTTCATCGATTTTCATT
TCTGCGTCATCGCCAATCTCGCAAGAAAGAGGAAAATAATGGCAGCTTTC
TTCGGCGGAGGCGGGTACCACCAGGGCATGGGAGGATTGGGTGGCGGCTC
TCGTCTTCCTCAAACCTTCGACGAAGAATACAACTGCTACTCCTTTGCCT
TCCAAGACAAAACACATTTGGAGGGCAGCGATAAAATCTTTCTCCCTCCC
TCGGCCTTGGACACGTTGGCCCGCCTGCACATTGATTACCCGATGCTTTT
TCAACTCACATGCCGGGTGTCGGGGAAGAAGACGCATTGCGGCGTACTCG
AATTCTCCGCCGCGGAGGGTAGCTGTTACTTGCCCTATTGGATGATGCAG
AACCTGATGCTGGAGGAGGGTGGCTTCTTGCAGGTAAGCGAGGGAAGGAG
CGGGGACGGTTTGCCTCGTCCGCCCACTCGCTCGCTCTGCCATCTCTCTG
ACACCTCTCGTCTTTCCCTCCTCCCTTCCTCCCCTCCATCGCTCCTCCCC
TCCACCCCTCTTTCCTTCTTTTCCTCCTCCACGTAGGTTAAGAATGTCTC
TCTCCCGAAATGCACCTTCGTCAAGCTCCGCCCACAGTCGGTGGACTTCC
TCGAGATCACCAATCCCCGTGCCGTCCTCGAGCGAGCCCTACGGTCCTTC
AGTTGTGTAACGGTCGGTGACCAGATCTGCATTCCCCACAACGAGAAATT
CTACCATATCGAGGTACGCACATCATTGCCTTTGCCTCCCTCCCTCCCTC
TCTTGTTACCTGATTTCTCGTCCCACGCACCCACCCCTCCTCCCCGTCCT
CCTTCCCTGCCTCTTTCCGTTTAGATCCGTGATGTGAAGCCAGCGGACGC
CGCCTGTATCATTGAGACAGACTGTGACGTGGATTTTGAAGCCCCTGTGG
GCTATGTGGAACCAGGACGAAATGGAGGGGGGCGGGAAGGGGGAGTGGCG
GCGAGCACAACCAGCGGGGGGATGATCACATCGAGACCGTTGAGTGGGAA
GGGAGGATACAAGGAGGAGCATGAAGCAGCTGCTGCAGCAGCAGCGGAGA
TGAAGAAGCAGGCCTCATTTTCAGGGAGGGGCGCCCGGCTGGACGGAAAG
GCCCATGCAGGAGGAGAGGGGGAGGGAGGGGAGGGTTTGGACGGGGGGGA
CTCTATGGACGTGTCAGGAGAGGGTGGAGGAGGAGGAGGCGGGGAGGAAG
GGCCAACTTCACCGCCGGTGTTTTTGGGGAGAACCATTAGTGGACGAGCC
TCTTTGTCGATGACTGAAGGGAGAGGTTCCTCCCTCATCAGCCAGACAGG
AGGGGGGAGCATAAGCTCAAGTTTGCGCGCGTCGTCTTCTGTTTCCTACG
GCTCGTCTTCGTCCTCGTCCTTGTCCTCCTCGACGGCAGCAGCAGGAGCA
GCAGCAGGAGCAGGAGGATACAAAAAGCCGGGGGCACTTGACAATAAATA
CAGTAGTAAAAAGGGGTTTCGATCCTTTGCGGGCCCGGGGAATAAGCTGG
CGTAG
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Coding sequence (CDS) from alignment at chr21:155810..157364-

>NO21G00430.1 ID=NO21G00430.1|Name=NO21G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr21:155810..157364- (Nannochloropsis oceanica)
ATGGCAGCTTTCTTCGGCGGAGGCGGGTACCACCAGGGCATGGGAGGATT
GGGTGGCGGCTCTCGTCTTCCTCAAACCTTCGACGAAGAATACAACTGCT
ACTCCTTTGCCTTCCAAGACAAAACACATTTGGAGGGCAGCGATAAAATC
TTTCTCCCTCCCTCGGCCTTGGACACGTTGGCCCGCCTGCACATTGATTA
CCCGATGCTTTTTCAACTCACATGCCGGGTGTCGGGGAAGAAGACGCATT
GCGGCGTACTCGAATTCTCCGCCGCGGAGGGTAGCTGTTACTTGCCCTAT
TGGATGATGCAGAACCTGATGCTGGAGGAGGGTGGCTTCTTGCAGGTTAA
GAATGTCTCTCTCCCGAAATGCACCTTCGTCAAGCTCCGCCCACAGTCGG
TGGACTTCCTCGAGATCACCAATCCCCGTGCCGTCCTCGAGCGAGCCCTA
CGGTCCTTCAGTTGTGTAACGGTCGGTGACCAGATCTGCATTCCCCACAA
CGAGAAATTCTACCATATCGAGATCCGTGATGTGAAGCCAGCGGACGCCG
CCTGTATCATTGAGACAGACTGTGACGTGGATTTTGAAGCCCCTGTGGGC
TATGTGGAACCAGGACGAAATGGAGGGGGGCGGGAAGGGGGAGTGGCGGC
GAGCACAACCAGCGGGGGGATGATCACATCGAGACCGTTGAGTGGGAAGG
GAGGATACAAGGAGGAGCATGAAGCAGCTGCTGCAGCAGCAGCGGAGATG
AAGAAGCAGGCCTCATTTTCAGGGAGGGGCGCCCGGCTGGACGGAAAGGC
CCATGCAGGAGGAGAGGGGGAGGGAGGGGAGGGTTTGGACGGGGGGGACT
CTATGGACGTGTCAGGAGAGGGTGGAGGAGGAGGAGGCGGGGAGGAAGGG
CCAACTTCACCGCCGGTGTTTTTGGGGAGAACCATTAGTGGACGAGCCTC
TTTGTCGATGACTGAAGGGAGAGGTTCCTCCCTCATCAGCCAGACAGGAG
GGGGGAGCATAAGCTCAAGTTTGCGCGCGTCGTCTTCTGTTTCCTACGGC
TCGTCTTCGTCCTCGTCCTTGTCCTCCTCGACGGCAGCAGCAGGAGCAGC
AGCAGGAGCAGGAGGATACAAAAAGCCGGGGGCACTTGACAATAAATACA
GTAGTAAAAAGGGGTTTCGATCCTTTGCGGGCCCGGGGAATAAGCTGGCG
TAG
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Synonyms
Publications