NO21G00310.1, NO21G00310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00310.1
Unique NameNO21G00310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length985
Alignment locationchr21:103501..104626 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:103501..104626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00310.1 vs.
Match: XP_009842777.1 (hypothetical protein, variant [Aphanomyces astaci]; ETV67785.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 66.6 bits (161), Expect = 8.600e-8
Identity = 48/172 (27.91%), Postives = 78/172 (45.35%), Query Frame = 0 
Query:    3 PYRIPLSRLTVGVLQDEVPPHETLRVLNASLVGLHTFPSSLPPSLPPSIHPSLPSIVHRDPSTGLAILLPSSSPPSLPSSLPPCLGLGICRSLGPPPFPPSLPPSHLYLLTPLPLSVLRPVSCILRGGLQLPLAFLHRGGDGSLTPYVSAEAATATAEGTSQLRNRAGIARR 175
            PYR+P S++ + V    VPP + L VLNAS+VGL   P  + P                D + G  + +       L + + PC+G GI RS+        +     ++LTP+P  +L+ V+ ++RG + L    L +      TPY   +   A   G S + +R  + R+
Sbjct:  470 PYRVPFSKVGLRVSGGSVPPSQILHVLNASVVGLCCHPYEIKP----------------DATNGGPVTV-------LDNPMVPCVGHGIVRSI-------DVERREFHILTPVPFEILQHVNLLVRGHISLAFQLLDQSAVYGTTPYAVVDVLAAEGTGASLMESRNNLKRK 611
The following BLAST results are available for this feature:
BLAST of NO21G00310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009842777.18.600e-827.91hypothetical protein, variant [Aphanomyces astaci]... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00310NO21G00310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00310.1NO21G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00310.1.cds1NO21G00310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00310.1.cds2NO21G00310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00310.1 ID=NO21G00310.1|Name=NO21G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=985bp
ATGGTGCCCTATCGCATCCCTCTTTCCCGCCTCACCGTTGGTGTACTCCA
GGACGAGGTTCCACCCCACGAAACCCTCCGAGTCCTCAACGCCTCCCTCG
TCGGCCTGCACACCTTCCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
ATCCATCCCTCCCTCCCCAGCATTGTCCACCGTGACCCGTCCACTGGCCT
CGCCATCCTCCTTCCTTCCTCTTCCCCTCCCTCCCTCCCCTCCTCCCTCC
CCCCTTGCCTCGGCCTGGGCATTTGCCGGAGTCTCGGCCCTCCCCCCTTT
CCGCCCTCCCTCCCTCCCTCCCACCTCTACCTCCTCACCCCCCTCCCTCT
GTCTGTGCTCCGGCCCGTCTCCTGCATCCTCCGGGGAGGGCTACAGCTGC
CGCTTGCCTTCCTGCACCGAGGGGGCGATGGCTCGCTCACTCCCTATGTG
TCTGCAGAAGCAGCAACAGCAACAGCAGAGGGAACGTCGCAGCTTCGAAA
CCGCGCGGGCATAGCCCGGAGGGGGTAGGAAGAAGTGCTAGGATGTCTGT
CAATGCAACAGCAGCAGCAACAGCAACAGCAGGTACCTCCCTCCCTCCCT
TGATCGTCAGTCTTGTCGGGCATTTCGAGGCTCCTTAACGGGTGGGTGGT
GGGAATATGGAAAAATATATCTACCTGTCCAGTGGGCATCATCTTCGCAG
GTGGCTCGTCCTACGATTTAATGACGTCGTGGGGGGGCTAGTGCAGGAGA
GGGAGGGAGGGAGGGAGGAGGGGGGAAGGAGGCCACGGAGAGGGAAAACA
AAACCATGTGACATAGATGCGCGAAACGGAAATAAGTTAAACACGAAAAT
GTCTCGTAAAAGAATAAGGAGGCAAGCGGCTTTTGATTCATTTCATCCCC
TGATTCCTCCTCCCTCTCTCGCTCCCTTCATCCCCCGTTCCACCTCTCAC
CAAACGTCATCTTCTCCTGCTCCATTTGCCTACCC
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protein sequence of NO21G00310.1

>NO21G00310.1-protein ID=NO21G00310.1-protein|Name=NO21G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MVPYRIPLSRLTVGVLQDEVPPHETLRVLNASLVGLHTFPSSLPPSLPPS
IHPSLPSIVHRDPSTGLAILLPSSSPPSLPSSLPPCLGLGICRSLGPPPF
PPSLPPSHLYLLTPLPLSVLRPVSCILRGGLQLPLAFLHRGGDGSLTPYV
SAEAATATAEGTSQLRNRAGIARRG*
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mRNA from alignment at chr21:103501..104626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00310.1 ID=NO21G00310.1|Name=NO21G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1126bp|location=Sequence derived from alignment at chr21:103501..104626- (Nannochloropsis oceanica)
ATGGTACGCCCCCCTTCCCTCCTTCCCTTCCTCCCTTCCTCCTTCCTTCC
GTCCCTCCCACTCTCCCCCAATGCCCATCCATCCTGATGCCAACGACTGC
ACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACAGGTGCCC
TATCGCATCCCTCTTTCCCGCCTCACCGTTGGTGTACTCCAGGACGAGGT
TCCACCCCACGAAACCCTCCGAGTCCTCAACGCCTCCCTCGTCGGCCTGC
ACACCTTCCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCATCCATCCC
TCCCTCCCCAGCATTGTCCACCGTGACCCGTCCACTGGCCTCGCCATCCT
CCTTCCTTCCTCTTCCCCTCCCTCCCTCCCCTCCTCCCTCCCCCCTTGCC
TCGGCCTGGGCATTTGCCGGAGTCTCGGCCCTCCCCCCTTTCCGCCCTCC
CTCCCTCCCTCCCACCTCTACCTCCTCACCCCCCTCCCTCTGTCTGTGCT
CCGGCCCGTCTCCTGCATCCTCCGGGGAGGGCTACAGCTGCCGCTTGCCT
TCCTGCACCGAGGGGGCGATGGCTCGCTCACTCCCTATGTGTCTGCAGAA
GCAGCAACAGCAACAGCAGAGGGAACGTCGCAGCTTCGAAACCGCGCGGG
CATAGCCCGGAGGGGGTAGGAAGAAGTGCTAGGATGTCTGTCAATGCAAC
AGCAGCAGCAACAGCAACAGCAGGTACCTCCCTCCCTCCCTTGATCGTCA
GTCTTGTCGGGCATTTCGAGGCTCCTTAACGGGTGGGTGGTGGGAATATG
GAAAAATATATCTACCTGTCCAGTGGGCATCATCTTCGCAGGTGGCTCGT
CCTACGATTTAATGACGTCGTGGGGGGGCTAGTGCAGGAGAGGGAGGGAG
GGAGGGAGGAGGGGGGAAGGAGGCCACGGAGAGGGAAAACAAAACCATGT
GACATAGATGCGCGAAACGGAAATAAGTTAAACACGAAAATGTCTCGTAA
AAGAATAAGGAGGCAAGCGGCTTTTGATTCATTTCATCCCCTGATTCCTC
CTCCCTCTCTCGCTCCCTTCATCCCCCGTTCCACCTCTCACCAAACGTCA
TCTTCTCCTGCTCCATTTGCCTACCC
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Coding sequence (CDS) from alignment at chr21:103501..104626-

>NO21G00310.1 ID=NO21G00310.1|Name=NO21G00310.1|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at chr21:103501..104626- (Nannochloropsis oceanica)
ATGGTGCCCTATCGCATCCCTCTTTCCCGCCTCACCGTTGGTGTACTCCA
GGACGAGGTTCCACCCCACGAAACCCTCCGAGTCCTCAACGCCTCCCTCG
TCGGCCTGCACACCTTCCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
ATCCATCCCTCCCTCCCCAGCATTGTCCACCGTGACCCGTCCACTGGCCT
CGCCATCCTCCTTCCTTCCTCTTCCCCTCCCTCCCTCCCCTCCTCCCTCC
CCCCTTGCCTCGGCCTGGGCATTTGCCGGAGTCTCGGCCCTCCCCCCTTT
CCGCCCTCCCTCCCTCCCTCCCACCTCTACCTCCTCACCCCCCTCCCTCT
GTCTGTGCTCCGGCCCGTCTCCTGCATCCTCCGGGGAGGGCTACAGCTGC
CGCTTGCCTTCCTGCACCGAGGGGGCGATGGCTCGCTCACTCCCTATGTG
TCTGCAGAAGCAGCAACAGCAACAGCAGAGGGAACGTCGCAGCTTCGAAA
CCGCGCGGGCATAGCCCGGAGGGGGTAG
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Synonyms
Publications