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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr21 | genome | chr21:95406..97186 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00280.1 vs.
Match: XP_005852547.1 (hypothetical protein NGA_0697400 [Nannochloropsis gaditana CCMP526]; EKU23285.1 hypothetical protein NGA_0697400 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 374.4 bits (960), Expect = 6.300e-100 Identity = 246/463 (53.13%), Postives = 307/463 (66.31%), Query Frame = 0
Query: 74 DDNDEEEELEGREEGEDDEEDGNLGEEGTEDQDENDYPSSGSSSSSSSSEELELTVDDEGRLAFNGGYVNYSLRSFPCAFPSLASSSSPSPLLSTLLHDCHLASTARAQARAGGEYSEGETFFITAVTTPTAQLEAIALSIFKFHSQHAVFDGARSGAEWWVQVLDEDDDIGMHFDKDYSLEAHLLNIHPHLATVTYLSPFGGPTLILPLPCPLRHGEDLSCILPWAGLSLPDVGKHTVFDGRLLHAAPAELRGLWKPQREEEEEGKEEGRAVSRERVTLLVNVWLNHIPNSAERPSAPLMAALSPYCPSSPLPCSLGSLPPSLASSGGKFGALPPSSLPSSSSPSSSYFSSSPVASRVTDVRVGGGV---ESPKLASWVLGGEAGQKYRVMVPLPAGEGGQVGRGEREEGTTIRLVFGGGLEGEVVREGKRKREEGGEGEEGSEEEEEEEEEEEVEEEEEEE 534
D + EE E E +D ++ + + G + D G S + +ELEL VD++GRL F+GG+V+YS RSFP AFPS + ++ S +LSTLLHDC +ASTARAQA+AGG+YSEGETFFITA T P QLEA+ALSIF H+ A + SGAEWWVQVL+E+DDIG+HFDKDY+LEAH LNI+PHLATVTYLS GGPTL+LPL PL GEDLS L A LSLP VGKHTVFDGRLLHAAPAELRGLW + EE G+ E R R+RVTLLVNVWLNHIPN +ERPS L+ ALSP ++PL C + PP + G ++ SS +SP AS+VT+V + GG + + ASW LGGEA Q+Y+V + +PA EG + R +EG+T+RL+F G+ G V ++++EEEEEEEVEEEEEEE
Sbjct: 3 DAKQKTEEEETVEHDDDADKHCSRKDGGWGNNDFQRKQDEGDSDIEAEGKELELLVDEDGRLVFDGGHVDYSFRSFPAAFPSFCTDATSSSVLSTLLHDCRVASTARAQAKAGGDYSEGETFFITADTKPKVQLEALALSIFWAHTSQATYTEGHSGAEWWVQVLEEEDDIGLHFDKDYALEAHGLNIYPHLATVTYLSSLGGPTLVLPLSGPLHVGEDLSGALSGAWLSLPAVGKHTVFDGRLLHAAPAELRGLWADEDGWEEGGRAE-RKGGRKRVTLLVNVWLNHIPNGSERPSPSLLQALSPCDSAAPLECRIPLAPPF------QRGDAEEGTISSS--------LASPGASQVTEVTLRGGAVGEGAAQRASWRLGGEAKQRYKVSILVPAEEGRKFSR--EDEGSTVRLMFKEGVTGMV-----------------GDKKKEEEEEEEVEEEEEEE 431
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G00280.1 ID=NO21G00280.1|Name=NO21G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp
AACCTCCTACCTCCTCCTCCTCCTCCCCATCTCCTCCTCCTTCTTTCAGG
CCAAAGTACAACGCAACAATGCCTGACAGCATGCACGGCGAGGAAGACGA
TGAGTCTTTCTTGGGAGCAGCAGCTCTAAAGGGCGACCCGGAGGAGGAGG
AGGAGGAGGTGGATGATGAGGGGGATTTTGGTGACGTGCTGGGTGATATC
GATGATGAAGAGGAGGAGCAGGAGGAGGATCAGGAGGAGGAGAAAGGAGA
AAGAGAGGCTGAGGATGAAGACAGTCACGAGGAACAGGATGATAATGATG
AGGAGGAGGAATTGGAGGGAAGGGAGGAGGGGGAGGACGACGAGGAGGAT
GGAAATCTGGGGGAGGAAGGCACAGAGGATCAAGATGAAAATGACTACCC
CTCCTCCGGTTCCTCCTCCTCTTCCTCCTCCTCCGAGGAGCTTGAGCTTA
CCGTGGACGATGAAGGTCGCCTCGCTTTCAATGGCGGCTACGTCAATTAC
TCCCTCCGCTCCTTTCCTTGCGCCTTCCCCTCCCTCGCTTCCTCCTCCTC
CCCCTCCCCTCTCCTCTCCACCTTACTCCACGACTGTCACCTTGCCAGCA
CGGCACGTGCTCAAGCCCGGGCAGGAGGGGAGTATAGCGAGGGTGAGACC
TTTTTTATCACTGCAGTTACAACGCCCACAGCGCAATTGGAGGCCATTGC
CCTGTCCATATTTAAGTTCCACAGTCAGCACGCAGTGTTCGACGGGGCGA
GGAGTGGGGCGGAATGGTGGGTGCAGGTCTTGGACGAGGACGACGACATT
GGCATGCACTTCGACAAGGACTACTCGCTCGAAGCCCATCTTCTCAACAT
CCACCCGCACCTGGCCACAGTCACCTACCTCTCCCCATTTGGGGGTCCCA
CCCTTATCCTTCCCCTCCCTTGCCCCTTGCGTCACGGCGAGGATCTTTCT
TGCATTTTGCCCTGGGCTGGCTTGTCGTTACCGGACGTTGGGAAACACAC
AGTCTTTGACGGCCGCCTCCTGCACGCCGCCCCTGCAGAACTACGGGGCC
TCTGGAAACCGCAGAGGGAAGAGGAGGAGGAAGGGAAGGAGGAAGGGAGA
GCGGTCTCGAGGGAGCGGGTCACCCTGCTCGTGAACGTGTGGTTGAATCA
CATCCCAAACTCAGCTGAACGACCAAGCGCTCCTCTCATGGCCGCCCTCT
CTCCCTACTGCCCTTCCAGTCCCCTTCCCTGCTCCCTTGGATCCCTCCCT
CCCTCCCTCGCGTCCTCAGGAGGGAAATTCGGCGCTCTTCCCCCGTCCTC
CCTCCCCTCCTCCTCCTCCCCCTCCTCCTCTTATTTCTCCTCCTCGCCTG
TGGCTTCGCGCGTGACAGATGTGAGGGTGGGAGGAGGGGTGGAAAGCCCC
AAGCTGGCATCCTGGGTGTTGGGGGGGGAGGCGGGTCAGAAGTATAGGGT
GATGGTGCCACTGCCAGCGGGGGAGGGAGGGCAGGTCGGGAGGGGGGAAA
GGGAGGAGGGAACCACAATACGGTTGGTTTTTGGCGGAGGATTGGAGGGA
GAGGTGGTGAGGGAAGGCAAGAGGAAGAGGGAAGAGGGGGGGGAGGGGGA
GGAGGGGAGTGAAGAAGAGGAGGAGGAGGAAGAGGAAGAGGAAGTGGAGG
AAGAGGAGGAGGAGGAAATGTACGGAAGAAAAAGTAAGGAAGAGGAGGAG
GATGAGAAGGAGGATGAGGATGAGGAGGAGGATGAGAAGGAGGATGAGGA
TGAGGAGGAGGAGGAGGAGGACGACCTCTAA back to topprotein sequence of NO21G00280.1 >NO21G00280.1-protein ID=NO21G00280.1-protein|Name=NO21G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=571bp
MPDSMHGEEDDESFLGAAALKGDPEEEEEEVDDEGDFGDVLGDIDDEEEE
QEEDQEEEKGEREAEDEDSHEEQDDNDEEEELEGREEGEDDEEDGNLGEE
GTEDQDENDYPSSGSSSSSSSSEELELTVDDEGRLAFNGGYVNYSLRSFP
CAFPSLASSSSPSPLLSTLLHDCHLASTARAQARAGGEYSEGETFFITAV
TTPTAQLEAIALSIFKFHSQHAVFDGARSGAEWWVQVLDEDDDIGMHFDK
DYSLEAHLLNIHPHLATVTYLSPFGGPTLILPLPCPLRHGEDLSCILPWA
GLSLPDVGKHTVFDGRLLHAAPAELRGLWKPQREEEEEGKEEGRAVSRER
VTLLVNVWLNHIPNSAERPSAPLMAALSPYCPSSPLPCSLGSLPPSLASS
GGKFGALPPSSLPSSSSPSSSYFSSSPVASRVTDVRVGGGVESPKLASWV
LGGEAGQKYRVMVPLPAGEGGQVGRGEREEGTTIRLVFGGGLEGEVVREG
KRKREEGGEGEEGSEEEEEEEEEEEVEEEEEEEMYGRKSKEEEEDEKEDE
DEEEDEKEDEDEEEEEEDDL* back to topmRNA from alignment at chr21:95406..97186- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G00280.1 ID=NO21G00280.1|Name=NO21G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp|location=Sequence derived from alignment at chr21:95406..97186- (Nannochloropsis oceanica)
AACCTCCTACCTCCTCCTCCTCCTCCCCATCTCCTCCTCCTTCTTTCAGG
CCAAAGTACAACGCAACAATGCCTGACAGCATGCACGGCGAGGAAGACGA
TGAGTCTTTCTTGGGAGCAGCAGCTCTAAAGGGCGACCCGGAGGAGGAGG
AGGAGGAGGTGGATGATGAGGGGGATTTTGGTGACGTGCTGGGTGATATC
GATGATGAAGAGGAGGAGCAGGAGGAGGATCAGGAGGAGGAGAAAGGAGA
AAGAGAGGCTGAGGATGAAGACAGTCACGAGGAACAGGATGATAATGATG
AGGAGGAGGAATTGGAGGGAAGGGAGGAGGGGGAGGACGACGAGGAGGAT
GGAAATCTGGGGGAGGAAGGCACAGAGGATCAAGATGAAAATGACTACCC
CTCCTCCGGTTCCTCCTCCTCTTCCTCCTCCTCCGAGGAGCTTGAGCTTA
CCGTGGACGATGAAGGTCGCCTCGCTTTCAATGGCGGCTACGTCAATTAC
TCCCTCCGCTCCTTTCCTTGCGCCTTCCCCTCCCTCGCTTCCTCCTCCTC
CCCCTCCCCTCTCCTCTCCACCTTACTCCACGACTGTCACCTTGCCAGCA
CGGCACGTGCTCAAGCCCGGGCAGGAGGGGAGTATAGCGAGGGTGAGACC
TTTTTTATCACTGCAGTTACAACGCCCACAGCGCAATTGGAGGCCATTGC
CCTGTCCATATTTAAGTTCCACAGTCAGCACGCAGTGTTCGACGGGGCGA
GGAGTGGGGCGGAATGGTGGGTGCAGGTCTTGGACGAGGACGACGACATT
GGCATGCACTTCGACAAGGACTACTCGCTCGAAGCCCATCTTCTCAACAT
CCACCCGCACCTGGCCACAGTCACCTACCTCTCCCCATTTGGGGGTCCCA
CCCTTATCCTTCCCCTCCCTTGCCCCTTGCGTCACGGCGAGGATCTTTCT
TGCATTTTGCCCTGGGCTGGCTTGTCGTTACCGGACGTTGGGAAACACAC
AGTCTTTGACGGCCGCCTCCTGCACGCCGCCCCTGCAGAACTACGGGGCC
TCTGGAAACCGCAGAGGGAAGAGGAGGAGGAAGGGAAGGAGGAAGGGAGA
GCGGTCTCGAGGGAGCGGGTCACCCTGCTCGTGAACGTGTGGTTGAATCA
CATCCCAAACTCAGCTGAACGACCAAGCGCTCCTCTCATGGCCGCCCTCT
CTCCCTACTGCCCTTCCAGTCCCCTTCCCTGCTCCCTTGGATCCCTCCCT
CCCTCCCTCGCGTCCTCAGGAGGGAAATTCGGCGCTCTTCCCCCGTCCTC
CCTCCCCTCCTCCTCCTCCCCCTCCTCCTCTTATTTCTCCTCCTCGCCTG
TGGCTTCGCGCGTGACAGATGTGAGGGTGGGAGGAGGGGTGGAAAGCCCC
AAGCTGGCATCCTGGGTGTTGGGGGGGGAGGCGGGTCAGAAGTATAGGGT
GATGGTGCCACTGCCAGCGGGGGAGGGAGGGCAGGTCGGGAGGGGGGAAA
GGGAGGAGGGAACCACAATACGGTTGGTTTTTGGCGGAGGATTGGAGGGA
GAGGTGGTGAGGGAAGGCAAGAGGAAGAGGGAAGAGGGGGGGGAGGGGGA
GGAGGGGAGTGAAGAAGAGGAGGAGGAGGAAGAGGAAGAGGAAGTGGAGG
AAGAGGAGGAGGAGGAAATGTACGGAAGAAAAAGTAAGGAAGAGGAGGAG
GATGAGAAGGAGGATGAGGATGAGGAGGAGGATGAGAAGGAGGATGAGGA
TGAGGAGGAGGAGGAGGAGGACGACCTCTAA back to topCoding sequence (CDS) from alignment at chr21:95406..97186- >NO21G00280.1 ID=NO21G00280.1|Name=NO21G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=1713bp|location=Sequence derived from alignment at chr21:95406..97186- (Nannochloropsis oceanica)
ATGCCTGACAGCATGCACGGCGAGGAAGACGATGAGTCTTTCTTGGGAGC
AGCAGCTCTAAAGGGCGACCCGGAGGAGGAGGAGGAGGAGGTGGATGATG
AGGGGGATTTTGGTGACGTGCTGGGTGATATCGATGATGAAGAGGAGGAG
CAGGAGGAGGATCAGGAGGAGGAGAAAGGAGAAAGAGAGGCTGAGGATGA
AGACAGTCACGAGGAACAGGATGATAATGATGAGGAGGAGGAATTGGAGG
GAAGGGAGGAGGGGGAGGACGACGAGGAGGATGGAAATCTGGGGGAGGAA
GGCACAGAGGATCAAGATGAAAATGACTACCCCTCCTCCGGTTCCTCCTC
CTCTTCCTCCTCCTCCGAGGAGCTTGAGCTTACCGTGGACGATGAAGGTC
GCCTCGCTTTCAATGGCGGCTACGTCAATTACTCCCTCCGCTCCTTTCCT
TGCGCCTTCCCCTCCCTCGCTTCCTCCTCCTCCCCCTCCCCTCTCCTCTC
CACCTTACTCCACGACTGTCACCTTGCCAGCACGGCACGTGCTCAAGCCC
GGGCAGGAGGGGAGTATAGCGAGGGTGAGACCTTTTTTATCACTGCAGTT
ACAACGCCCACAGCGCAATTGGAGGCCATTGCCCTGTCCATATTTAAGTT
CCACAGTCAGCACGCAGTGTTCGACGGGGCGAGGAGTGGGGCGGAATGGT
GGGTGCAGGTCTTGGACGAGGACGACGACATTGGCATGCACTTCGACAAG
GACTACTCGCTCGAAGCCCATCTTCTCAACATCCACCCGCACCTGGCCAC
AGTCACCTACCTCTCCCCATTTGGGGGTCCCACCCTTATCCTTCCCCTCC
CTTGCCCCTTGCGTCACGGCGAGGATCTTTCTTGCATTTTGCCCTGGGCT
GGCTTGTCGTTACCGGACGTTGGGAAACACACAGTCTTTGACGGCCGCCT
CCTGCACGCCGCCCCTGCAGAACTACGGGGCCTCTGGAAACCGCAGAGGG
AAGAGGAGGAGGAAGGGAAGGAGGAAGGGAGAGCGGTCTCGAGGGAGCGG
GTCACCCTGCTCGTGAACGTGTGGTTGAATCACATCCCAAACTCAGCTGA
ACGACCAAGCGCTCCTCTCATGGCCGCCCTCTCTCCCTACTGCCCTTCCA
GTCCCCTTCCCTGCTCCCTTGGATCCCTCCCTCCCTCCCTCGCGTCCTCA
GGAGGGAAATTCGGCGCTCTTCCCCCGTCCTCCCTCCCCTCCTCCTCCTC
CCCCTCCTCCTCTTATTTCTCCTCCTCGCCTGTGGCTTCGCGCGTGACAG
ATGTGAGGGTGGGAGGAGGGGTGGAAAGCCCCAAGCTGGCATCCTGGGTG
TTGGGGGGGGAGGCGGGTCAGAAGTATAGGGTGATGGTGCCACTGCCAGC
GGGGGAGGGAGGGCAGGTCGGGAGGGGGGAAAGGGAGGAGGGAACCACAA
TACGGTTGGTTTTTGGCGGAGGATTGGAGGGAGAGGTGGTGAGGGAAGGC
AAGAGGAAGAGGGAAGAGGGGGGGGAGGGGGAGGAGGGGAGTGAAGAAGA
GGAGGAGGAGGAAGAGGAAGAGGAAGTGGAGGAAGAGGAGGAGGAGGAAA
TGTACGGAAGAAAAAGTAAGGAAGAGGAGGAGGATGAGAAGGAGGATGAG
GATGAGGAGGAGGATGAGAAGGAGGATGAGGATGAGGAGGAGGAGGAGGA
GGACGACCTCTAA back to top
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