NO21G00230.4, NO21G00230.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00230.4
Unique NameNO21G00230.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1925
Alignment locationchr21:76914..78992 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:76914..78992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G00230.4 vs.
Match: EWM22532.1 (hypothetical protein Naga_100290g2 [Nannochloropsis gaditana])

HSP 1 Score: 309.3 bits (791), Expect = 1.300e-80
Identity = 141/218 (64.68%), Postives = 173/218 (79.36%), Query Frame = 0 
Query:   61 FFFAEYFNLVMHNFIYYLEGVIWGQDGPPPPLEDLGIRLFAGVFPPSAEWIVDLFLYILIGMVLTLCIARFVLNNVPWGGPEMLLTKKRGDGLDVATCSIPVPSVNICKRICKILSIAIVCRILSYTLTLEPNPAAYCHPPFWNPPSTVSEIMSTVAVRGSCGDLLFSSHTFHGMVMMLTILRHAPRMYVICGMAVCSMVMVVISLLAYKSHYSHDIV 279
            FF AEYFNL+MHNF+Y+LEG +WG  GPPPPL DLGI  FAG+FP S  W+V  FLY+LIGMVL LC+ R +LNNVPWG PE +L K+ G+ L   TC IPVP V ICKR C++L+I +V R+LS+  TLEPNPA YCHPPFW+PP  + EI+  + + GSCGDLLFS+HT H M MMLT+LRHAP +Y++ G+AV SMVMVVIS+LA+K+HYSHDIV
Sbjct:  139 FFVAEYFNLIMHNFVYWLEGKMWGASGPPPPLTDLGIMAFAGIFPLSYSWLVGFFLYLLIGMVLVLCLGRLLLNNVPWGCPETVLEKREGETL--RTCCIPVPFVYICKRACQVLTIGLVLRVLSFVFTLEPNPADYCHPPFWDPPDALLEILGRIEIVGSCGDLLFSAHTLHAMAMMLTVLRHAPGLYLVTGLAVASMVMVVISMLAFKNHYSHDIV 354
The following BLAST results are available for this feature:
BLAST of NO21G00230.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22532.11.300e-8064.68hypothetical protein Naga_100290g2 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00230NO21G00230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00230.4NO21G00230.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00230.4.cds1NO21G00230.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00230.4 ID=NO21G00230.4|Name=NO21G00230.4|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp
GGGTCGTGTGAAAATTCTGCATAGTGCTTGGCAGGCACATAGCTATATTC
ACAGTCCTTGGTACGCATTACACAAGGCGTCAAAAATCCTTCCACTCAGC
AGGCACTTTGATAAGCACATTTTCAAGCCCGAGACATTCTTTTTCCTGAC
TTGACTGCCATTTTTGGAGCAAGGATTTAGTAGTCTAACGATCCTCCCTC
GTTCCTTCTTATCCAAGGCCTTCCCCAACTACACCATCATCACATGACAG
GCGGTAGCAACGACAGCAGCAGCAACATGACAGACAACGATGCTGTGGCC
AATGTCACAGATGGAGACGGTTCTACCCGCGAGAACTTTCAAATCATTGA
CATCGATCCTCCTTCCTCCCCCATGAGCTCCGCTGCCTCTACCAGCTTTC
GAGAAGCTGAGGGAGGAGTAGGACTGTGTTGTTTGCGGCGAGACCCAACC
GCTTTATCTCTCTTGCCGTTTAGCATGTTATTTGCGGCACGAACGTCGGG
CGATGCAATCGGTAATTCCAATCGGCATAGGAATAAGTGGGGGCAAATTC
GAATTAAAACCTGGAAGGAGACTAAGTGGCAGGCGAAGCTCGAGTTTGCC
TTGCTGAAGCAGAAATGGAAGTGGATAGTGGTACGTCTACAAACTACTGC
CTCAATCTCTTCCCTGCATTGTCATGCCATCTCCGTCGGTCGCAATATTC
CGAGCAGCTCACATACAGGTGCTTATCTCTTAATTCCTTTTCTCCGACTT
TGTGTACCACCTCTCTCCCTCCCTCTACCCTCCCCCTGCAGGGCTTCTTT
TTCGCCGAGTACTTCAATCTCGTGATGCATAACTTCATCTACTATCTGGA
AGGGGTGATCTGGGGGCAGGACGGGCCCCCTCCTCCTTTAGAAGACCTGG
GTATCAGGCTATTCGCAGGCGTTTTCCCTCCCTCGGCCGAGTGGATCGTG
GACCTCTTCCTCTACATTCTTATCGGCATGGTCCTCACCCTCTGCATTGC
GCGTTTTGTTTTAAATAATGTTCCGTGGGGCGGACCTGAGATGTTGCTCA
CTAAGAAGAGGGGAGATGGCCTGGACGTTGCCACCTGCTCGATTCCCGTA
CCCTCCGTCAATATATGCAAACGTATCTGCAAGATCCTTTCCATTGCAAT
CGTCTGTCGCATACTGTCCTATACGCTCACATTAGAGCCAAATCCGGCCG
CGTACTGTCACCCACCTTTTTGGAACCCTCCTAGCACCGTCAGTGAGATC
ATGAGCACGGTGGCCGTGAGGGGCAGCTGTGGGGATCTCCTCTTCTCGAG
CCACACATTCCATGGCATGGTGATGATGCTGACAATCTTGCGGCACGCGC
CGAGGATGTACGTCATCTGCGGAATGGCTGTCTGCTCGATGGTCATGGTC
GTCATCTCCCTCCTGGCATATAAGAGCCACTATTCACACGATATCGTACA
AGGTAAGCCCTTGCCCACCCTCCCTCCATCCTTTCCGCTTGTATAAGGGA
CGAGGTGTATGTGTTTCAGCCATATTCATGACCATGTCCCTGATTTCCTT
CCTTCCTCTATTCTCTGACCCTCTCCCCATCTCAGCCGTCTACACCACCG
TGTTGCTCTGGTTGCTGACACCCGAGCCCACTGTCGCAGATTGCGAAGAG
TTGCAAATCGACTTTCCACCATGGGAGCTCTAAGGAGGTAGAAGGCATAT
TATATTGCATCAAGAAAAGATAAAGGATCTGGGGCAGCAGTGATTGCCAT
GCACATTTCTTGTACATGGAAGGAAATAGCGTATGTTTGTGAAAAGTCAA
ATGATGACAAACTATTATTCTTTCGGGGATTTAAAATGAAAATGATCGTC
CCTACCATAAATGTCACTTTTGCTTGAAAGCAGATAAAGAGAAATTGGAA
AGAACAAAACCGAAATGTTACCGGA
back to top

protein sequence of NO21G00230.4

>NO21G00230.4-protein ID=NO21G00230.4-protein|Name=NO21G00230.4|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MEVDSGTSTNYCLNLFPALSCHLRRSQYSEQLTYRCLSLNSFSPTLCTTS
LPPSTLPLQGFFFAEYFNLVMHNFIYYLEGVIWGQDGPPPPLEDLGIRLF
AGVFPPSAEWIVDLFLYILIGMVLTLCIARFVLNNVPWGGPEMLLTKKRG
DGLDVATCSIPVPSVNICKRICKILSIAIVCRILSYTLTLEPNPAAYCHP
PFWNPPSTVSEIMSTVAVRGSCGDLLFSSHTFHGMVMMLTILRHAPRMYV
ICGMAVCSMVMVVISLLAYKSHYSHDIVQGKPLPTLPPSFPLV*
back to top

mRNA from alignment at chr21:76914..78992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00230.4 ID=NO21G00230.4|Name=NO21G00230.4|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp|location=Sequence derived from alignment at chr21:76914..78992+ (Nannochloropsis oceanica)
GGGTCGTGTGAAAATTCTGCATAGTGCTTGGCAGGCACATAGCTATATTC
ACAGTCCTTGGTACGCATTACACAAGGCGTCAAAAATCCTTCCACTCAGC
AGGCACTTTGATAAGCACATTTTCAAGCCCGAGACATTCTTTTTCCTGAC
TTGACTGCCATTTTTGGAGCAAGGATTTAGTAGTCTAACGATCCTCCCTC
GTTCCTTCTTATCCAAGGCCTTCCCCAACTACACCATCATCACATGACAG
GCGGTAGCAACGACAGCAGCAGCAACATGACAGACAACGATGCTGTGGCC
AATGTCACAGATGGAGACGGTTCTACCCGCGAGAACTTTCAAATCATTGA
CATCGATCCTCCTTCCTCCCCCATGAGCTCCGCTGCCTCTACCAGCTTTC
GAGAAGCTGAGGGAGGAGTAGGACTGTGTTGTTTGCGGCGAGACCCAACC
GCTTTATCTCTCTTGCCGTTTAGCATGTTATTTGCGGCACGAACGTCGGG
CGATGCAATCGGTAATTCCAATCGGCATAGGAATAAGTGGGGGCAAATTC
GAATTAAAACCTGGAAGGAGGTAAGTGAGAGGGAGGGAGAAATGGGGAAG
CGAGCGGGCAGAATGAATAAGAGGGACCTTCAAAATTTTATCTGAGGGAG
CAGGGTGATGGGGATCGTGAAGAGCTCGAAATCCTTTACATATTTCATCC
TCATCTTAACGCGATTCCCAACAGACTAAGTGGCAGGCGAAGCTCGAGTT
TGCCTTGCTGAAGCAGAAATGGAAGTGGATAGTGGTACGTCTACAAACTA
CTGCCTCAATCTCTTCCCTGCATTGTCATGCCATCTCCGTCGGTCGCAAT
ATTCCGAGCAGCTCACATACAGGTGCTTATCTCTTAATTCCTTTTCTCCG
ACTTTGTGTACCACCTCTCTCCCTCCCTCTACCCTCCCCCTGCAGGGCTT
CTTTTTCGCCGAGTACTTCAATCTCGTGATGCATAACTTCATCTACTATC
TGGAAGGGGTGATCTGGGGGCAGGACGGGCCCCCTCCTCCTTTAGAAGAC
CTGGGTATCAGGCTATTCGCAGGCGTTTTCCCTCCCTCGGCCGAGTGGAT
CGTGGACCTCTTCCTCTACATTCTTATCGGCATGGTCCTCACCCTCTGCA
TTGCGCGTTTTGTTTTAAATAATGTTCCGTGGGGCGGACCTGAGATGTTG
CTCACTAAGAAGAGGGGAGATGGCCTGGACGTTGCCACCTGCTCGATTCC
CGTACCCTCCGTCAATATATGCAAACGTATCTGCAAGATCCTTTCCATTG
CAATCGTCTGTCGCATACTGTCCTATACGCTCACATTAGAGCCAAATCCG
GCCGCGTACTGTCACCCACCTTTTTGGAACCCTCCTAGCACCGTCAGTGA
GATCATGAGCACGGTGGCCGTGAGGGGCAGCTGTGGGGATCTCCTCTTCT
CGAGCCACACATTCCATGGCATGGTGATGATGCTGACAATCTTGCGGCAC
GCGCCGAGGATGTACGTCATCTGCGGAATGGCTGTCTGCTCGATGGTCAT
GGTCGTCATCTCCCTCCTGGCATATAAGAGCCACTATTCACACGATATCG
TACAAGGTAAGCCCTTGCCCACCCTCCCTCCATCCTTTCCGCTTGTATAA
GGGACGAGGTGTATGTGTTTCAGCCATATTCATGACCATGTCCCTGATTT
CCTTCCTTCCTCTATTCTCTGACCCTCTCCCCATCTCAGCCGTCTACACC
ACCGTGTTGCTCTGGTTGCTGACACCCGAGCCCACTGTCGCAGATTGCGA
AGAGTTGCAAATCGACTTTCCACCATGGGAGCTCTAAGGAGGTAGAAGGC
ATATTATATTGCATCAAGAAAAGATAAAGGATCTGGGGCAGCAGTGATTG
CCATGCACATTTCTTGTACATGGAAGGAAATAGCGTATGTTTGTGAAAAG
TCAAATGATGACAAACTATTATTCTTTCGGGGATTTAAAATGAAAATGAT
CGTCCCTACCATAAATGTCACTTTTGCTTGAAAGCAGATAAAGAGAAATT
GGAAAGAACAAAACCGAAATGTTACCGGA
back to top

Coding sequence (CDS) from alignment at chr21:76914..78992+

>NO21G00230.4 ID=NO21G00230.4|Name=NO21G00230.4|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr21:76914..78992+ (Nannochloropsis oceanica)
ATGGAAGTGGATAGTGGTACGTCTACAAACTACTGCCTCAATCTCTTCCC
TGCATTGTCATGCCATCTCCGTCGGTCGCAATATTCCGAGCAGCTCACAT
ACAGGTGCTTATCTCTTAATTCCTTTTCTCCGACTTTGTGTACCACCTCT
CTCCCTCCCTCTACCCTCCCCCTGCAGGGCTTCTTTTTCGCCGAGTACTT
CAATCTCGTGATGCATAACTTCATCTACTATCTGGAAGGGGTGATCTGGG
GGCAGGACGGGCCCCCTCCTCCTTTAGAAGACCTGGGTATCAGGCTATTC
GCAGGCGTTTTCCCTCCCTCGGCCGAGTGGATCGTGGACCTCTTCCTCTA
CATTCTTATCGGCATGGTCCTCACCCTCTGCATTGCGCGTTTTGTTTTAA
ATAATGTTCCGTGGGGCGGACCTGAGATGTTGCTCACTAAGAAGAGGGGA
GATGGCCTGGACGTTGCCACCTGCTCGATTCCCGTACCCTCCGTCAATAT
ATGCAAACGTATCTGCAAGATCCTTTCCATTGCAATCGTCTGTCGCATAC
TGTCCTATACGCTCACATTAGAGCCAAATCCGGCCGCGTACTGTCACCCA
CCTTTTTGGAACCCTCCTAGCACCGTCAGTGAGATCATGAGCACGGTGGC
CGTGAGGGGCAGCTGTGGGGATCTCCTCTTCTCGAGCCACACATTCCATG
GCATGGTGATGATGCTGACAATCTTGCGGCACGCGCCGAGGATGTACGTC
ATCTGCGGAATGGCTGTCTGCTCGATGGTCATGGTCGTCATCTCCCTCCT
GGCATATAAGAGCCACTATTCACACGATATCGTACAAGGTAAGCCCTTGC
CCACCCTCCCTCCATCCTTTCCGCTTGTATAA
back to top
Synonyms
Publications