NO21G00230.1, NO21G00230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00230.1
Unique NameNO21G00230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1631
Alignment locationchr21:76914..78992 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:76914..78992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00230.1 vs.
Match: EWM22532.1 (hypothetical protein Naga_100290g2 [Nannochloropsis gaditana])

HSP 1 Score: 402.1 bits (1032), Expect = 1.900e-108
Identity = 183/289 (63.32%), Postives = 229/289 (79.24%), Query Frame = 0 
Query:   93 NRHRNKWGQIRIKTWKETKWQAKLEFALLKQKWKWIVGFFFAEYFNLVMHNFIYYLEGVIWGQDGPPPPLEDLGIRLFAGVFPPSAEWIVDLFLYILIGMVLTLCIARFVLNNVPWGGPEMLLTKKRGDGLDVATCSIPVPSVNICKRICKILSIAIVCRILSYTLTLEPNPAAYCHPPFWNPPSTVSEIMSTVAVRGSCGDLLFSSHTFHGMVMMLTILRHAPRMYVICGMAVCSMVMVVISLLAYKSHYSHDIVQAVYTTVLLWLLTPEPTVADCEELQIDFPPWEL 382
            NR  + W  IR K WKE +WQ +LE+ALLKQ+WKWI  FF AEYFNL+MHNF+Y+LEG +WG  GPPPPL DLGI  FAG+FP S  W+V  FLY+LIGMVL LC+ R +LNNVPWG PE +L K+ G+ L   TC IPVP V ICKR C++L+I +V R+LS+  TLEPNPA YCHPPFW+PP  + EI+  + + GSCGDLLFS+HT H M MMLT+LRHAP +Y++ G+AV SMVMVVIS+LA+K+HYSHDIV A+YT+VLLW+LTPEPTVADC+ L+++ PP ++
Sbjct:  101 NRAWDSWKAIRCKKWKEIEWQGRLEWALLKQEWKWIAMFFVAEYFNLIMHNFVYWLEGKMWGASGPPPPLTDLGIMAFAGIFPLSYSWLVGFFLYLLIGMVLVLCLGRLLLNNVPWGCPETVLEKREGETL--RTCCIPVPFVYICKRACQVLTIGLVLRVLSFVFTLEPNPADYCHPPFWDPPDALLEILGRIEIVGSCGDLLFSAHTLHAMAMMLTVLRHAPGLYLVTGLAVASMVMVVISMLAFKNHYSHDIVTAIYTSVLLWMLTPEPTVADCDLLKVELPPGDM 387
The following BLAST results are available for this feature:
BLAST of NO21G00230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22532.11.900e-10863.32hypothetical protein Naga_100290g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00230NO21G00230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00230.1NO21G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00230.1.cds1NO21G00230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00230.1.cds2NO21G00230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00230.1.cds3NO21G00230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00230.1.cds4NO21G00230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00230.1 ID=NO21G00230.1|Name=NO21G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1631bp
GGGTCGTGTGAAAATTCTGCATAGTGCTTGGCAGGCACATAGCTATATTC
ACAGTCCTTGGTACGCATTACACAAGGCGTCAAAAATCCTTCCACTCAGC
AGGCACTTTGATAAGCACATTTTCAAGCCCGAGACATTCTTTTTCCTGAC
TTGACTGCCATTTTTGGAGCAAGGATTTAGTAGTCTAACGATCCTCCCTC
GTTCCTTCTTATCCAAGGCCTTCCCCAACTACACCATCATCACATGACAG
GCGGTAGCAACGACAGCAGCAGCAACATGACAGACAACGATGCTGTGGCC
AATGTCACAGATGGAGACGGTTCTACCCGCGAGAACTTTCAAATCATTGA
CATCGATCCTCCTTCCTCCCCCATGAGCTCCGCTGCCTCTACCAGCTTTC
GAGAAGCTGAGGGAGGAGTAGGACTGTGTTGTTTGCGGCGAGACCCAACC
GCTTTATCTCTCTTGCCGTTTAGCATGTTATTTGCGGCACGAACGTCGGG
CGATGCAATCGGTAATTCCAATCGGCATAGGAATAAGTGGGGGCAAATTC
GAATTAAAACCTGGAAGGAGACTAAGTGGCAGGCGAAGCTCGAGTTTGCC
TTGCTGAAGCAGAAATGGAAGTGGATAGTGGGCTTCTTTTTCGCCGAGTA
CTTCAATCTCGTGATGCATAACTTCATCTACTATCTGGAAGGGGTGATCT
GGGGGCAGGACGGGCCCCCTCCTCCTTTAGAAGACCTGGGTATCAGGCTA
TTCGCAGGCGTTTTCCCTCCCTCGGCCGAGTGGATCGTGGACCTCTTCCT
CTACATTCTTATCGGCATGGTCCTCACCCTCTGCATTGCGCGTTTTGTTT
TAAATAATGTTCCGTGGGGCGGACCTGAGATGTTGCTCACTAAGAAGAGG
GGAGATGGCCTGGACGTTGCCACCTGCTCGATTCCCGTACCCTCCGTCAA
TATATGCAAACGTATCTGCAAGATCCTTTCCATTGCAATCGTCTGTCGCA
TACTGTCCTATACGCTCACATTAGAGCCAAATCCGGCCGCGTACTGTCAC
CCACCTTTTTGGAACCCTCCTAGCACCGTCAGTGAGATCATGAGCACGGT
GGCCGTGAGGGGCAGCTGTGGGGATCTCCTCTTCTCGAGCCACACATTCC
ATGGCATGGTGATGATGCTGACAATCTTGCGGCACGCGCCGAGGATGTAC
GTCATCTGCGGAATGGCTGTCTGCTCGATGGTCATGGTCGTCATCTCCCT
CCTGGCATATAAGAGCCACTATTCACACGATATCGTACAAGCCGTCTACA
CCACCGTGTTGCTCTGGTTGCTGACACCCGAGCCCACTGTCGCAGATTGC
GAAGAGTTGCAAATCGACTTTCCACCATGGGAGCTCTAAGGAGGTAGAAG
GCATATTATATTGCATCAAGAAAAGATAAAGGATCTGGGGCAGCAGTGAT
TGCCATGCACATTTCTTGTACATGGAAGGAAATAGCGTATGTTTGTGAAA
AGTCAAATGATGACAAACTATTATTCTTTCGGGGATTTAAAATGAAAATG
ATCGTCCCTACCATAAATGTCACTTTTGCTTGAAAGCAGATAAAGAGAAA
TTGGAAAGAACAAAACCGAAATGTTACCGGA
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protein sequence of NO21G00230.1

>NO21G00230.1-protein ID=NO21G00230.1-protein|Name=NO21G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MTGGSNDSSSNMTDNDAVANVTDGDGSTRENFQIIDIDPPSSPMSSAAST
SFREAEGGVGLCCLRRDPTALSLLPFSMLFAARTSGDAIGNSNRHRNKWG
QIRIKTWKETKWQAKLEFALLKQKWKWIVGFFFAEYFNLVMHNFIYYLEG
VIWGQDGPPPPLEDLGIRLFAGVFPPSAEWIVDLFLYILIGMVLTLCIAR
FVLNNVPWGGPEMLLTKKRGDGLDVATCSIPVPSVNICKRICKILSIAIV
CRILSYTLTLEPNPAAYCHPPFWNPPSTVSEIMSTVAVRGSCGDLLFSSH
TFHGMVMMLTILRHAPRMYVICGMAVCSMVMVVISLLAYKSHYSHDIVQA
VYTTVLLWLLTPEPTVADCEELQIDFPPWEL*
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mRNA from alignment at chr21:76914..78992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00230.1 ID=NO21G00230.1|Name=NO21G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp|location=Sequence derived from alignment at chr21:76914..78992+ (Nannochloropsis oceanica)
GGGTCGTGTGAAAATTCTGCATAGTGCTTGGCAGGCACATAGCTATATTC
ACAGTCCTTGGTACGCATTACACAAGGCGTCAAAAATCCTTCCACTCAGC
AGGCACTTTGATAAGCACATTTTCAAGCCCGAGACATTCTTTTTCCTGAC
TTGACTGCCATTTTTGGAGCAAGGATTTAGTAGTCTAACGATCCTCCCTC
GTTCCTTCTTATCCAAGGCCTTCCCCAACTACACCATCATCACATGACAG
GCGGTAGCAACGACAGCAGCAGCAACATGACAGACAACGATGCTGTGGCC
AATGTCACAGATGGAGACGGTTCTACCCGCGAGAACTTTCAAATCATTGA
CATCGATCCTCCTTCCTCCCCCATGAGCTCCGCTGCCTCTACCAGCTTTC
GAGAAGCTGAGGGAGGAGTAGGACTGTGTTGTTTGCGGCGAGACCCAACC
GCTTTATCTCTCTTGCCGTTTAGCATGTTATTTGCGGCACGAACGTCGGG
CGATGCAATCGGTAATTCCAATCGGCATAGGAATAAGTGGGGGCAAATTC
GAATTAAAACCTGGAAGGAGGTAAGTGAGAGGGAGGGAGAAATGGGGAAG
CGAGCGGGCAGAATGAATAAGAGGGACCTTCAAAATTTTATCTGAGGGAG
CAGGGTGATGGGGATCGTGAAGAGCTCGAAATCCTTTACATATTTCATCC
TCATCTTAACGCGATTCCCAACAGACTAAGTGGCAGGCGAAGCTCGAGTT
TGCCTTGCTGAAGCAGAAATGGAAGTGGATAGTGGTACGTCTACAAACTA
CTGCCTCAATCTCTTCCCTGCATTGTCATGCCATCTCCGTCGGTCGCAAT
ATTCCGAGCAGCTCACATACAGGTGCTTATCTCTTAATTCCTTTTCTCCG
ACTTTGTGTACCACCTCTCTCCCTCCCTCTACCCTCCCCCTGCAGGGCTT
CTTTTTCGCCGAGTACTTCAATCTCGTGATGCATAACTTCATCTACTATC
TGGAAGGGGTGATCTGGGGGCAGGACGGGCCCCCTCCTCCTTTAGAAGAC
CTGGGTATCAGGCTATTCGCAGGCGTTTTCCCTCCCTCGGCCGAGTGGAT
CGTGGACCTCTTCCTCTACATTCTTATCGGCATGGTCCTCACCCTCTGCA
TTGCGCGTTTTGTTTTAAATAATGTTCCGTGGGGCGGACCTGAGATGTTG
CTCACTAAGAAGAGGGGAGATGGCCTGGACGTTGCCACCTGCTCGATTCC
CGTACCCTCCGTCAATATATGCAAACGTATCTGCAAGATCCTTTCCATTG
CAATCGTCTGTCGCATACTGTCCTATACGCTCACATTAGAGCCAAATCCG
GCCGCGTACTGTCACCCACCTTTTTGGAACCCTCCTAGCACCGTCAGTGA
GATCATGAGCACGGTGGCCGTGAGGGGCAGCTGTGGGGATCTCCTCTTCT
CGAGCCACACATTCCATGGCATGGTGATGATGCTGACAATCTTGCGGCAC
GCGCCGAGGATGTACGTCATCTGCGGAATGGCTGTCTGCTCGATGGTCAT
GGTCGTCATCTCCCTCCTGGCATATAAGAGCCACTATTCACACGATATCG
TACAAGGTAAGCCCTTGCCCACCCTCCCTCCATCCTTTCCGCTTGTATAA
GGGACGAGGTGTATGTGTTTCAGCCATATTCATGACCATGTCCCTGATTT
CCTTCCTTCCTCTATTCTCTGACCCTCTCCCCATCTCAGCCGTCTACACC
ACCGTGTTGCTCTGGTTGCTGACACCCGAGCCCACTGTCGCAGATTGCGA
AGAGTTGCAAATCGACTTTCCACCATGGGAGCTCTAAGGAGGTAGAAGGC
ATATTATATTGCATCAAGAAAAGATAAAGGATCTGGGGCAGCAGTGATTG
CCATGCACATTTCTTGTACATGGAAGGAAATAGCGTATGTTTGTGAAAAG
TCAAATGATGACAAACTATTATTCTTTCGGGGATTTAAAATGAAAATGAT
CGTCCCTACCATAAATGTCACTTTTGCTTGAAAGCAGATAAAGAGAAATT
GGAAAGAACAAAACCGAAATGTTACCGGA
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Coding sequence (CDS) from alignment at chr21:76914..78992+

>NO21G00230.1 ID=NO21G00230.1|Name=NO21G00230.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr21:76914..78992+ (Nannochloropsis oceanica)
ATGACAGGCGGTAGCAACGACAGCAGCAGCAACATGACAGACAACGATGC
TGTGGCCAATGTCACAGATGGAGACGGTTCTACCCGCGAGAACTTTCAAA
TCATTGACATCGATCCTCCTTCCTCCCCCATGAGCTCCGCTGCCTCTACC
AGCTTTCGAGAAGCTGAGGGAGGAGTAGGACTGTGTTGTTTGCGGCGAGA
CCCAACCGCTTTATCTCTCTTGCCGTTTAGCATGTTATTTGCGGCACGAA
CGTCGGGCGATGCAATCGGTAATTCCAATCGGCATAGGAATAAGTGGGGG
CAAATTCGAATTAAAACCTGGAAGGAGACTAAGTGGCAGGCGAAGCTCGA
GTTTGCCTTGCTGAAGCAGAAATGGAAGTGGATAGTGGGCTTCTTTTTCG
CCGAGTACTTCAATCTCGTGATGCATAACTTCATCTACTATCTGGAAGGG
GTGATCTGGGGGCAGGACGGGCCCCCTCCTCCTTTAGAAGACCTGGGTAT
CAGGCTATTCGCAGGCGTTTTCCCTCCCTCGGCCGAGTGGATCGTGGACC
TCTTCCTCTACATTCTTATCGGCATGGTCCTCACCCTCTGCATTGCGCGT
TTTGTTTTAAATAATGTTCCGTGGGGCGGACCTGAGATGTTGCTCACTAA
GAAGAGGGGAGATGGCCTGGACGTTGCCACCTGCTCGATTCCCGTACCCT
CCGTCAATATATGCAAACGTATCTGCAAGATCCTTTCCATTGCAATCGTC
TGTCGCATACTGTCCTATACGCTCACATTAGAGCCAAATCCGGCCGCGTA
CTGTCACCCACCTTTTTGGAACCCTCCTAGCACCGTCAGTGAGATCATGA
GCACGGTGGCCGTGAGGGGCAGCTGTGGGGATCTCCTCTTCTCGAGCCAC
ACATTCCATGGCATGGTGATGATGCTGACAATCTTGCGGCACGCGCCGAG
GATGTACGTCATCTGCGGAATGGCTGTCTGCTCGATGGTCATGGTCGTCA
TCTCCCTCCTGGCATATAAGAGCCACTATTCACACGATATCGTACAAGCC
GTCTACACCACCGTGTTGCTCTGGTTGCTGACACCCGAGCCCACTGTCGC
AGATTGCGAAGAGTTGCAAATCGACTTTCCACCATGGGAGCTCTAA
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Synonyms
Publications