NO21G00110.1, NO21G00110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00110.1
Unique NameNO21G00110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1545
Alignment locationchr21:29777..33681 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:29777..33681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G00110.1 vs.
Match: EWM20660.1 (Histidine phosphatase superfamily, clade-1 [Nannochloropsis gaditana])

HSP 1 Score: 452.2 bits (1162), Expect = 2.100e-123
Identity = 240/369 (65.04%), Postives = 276/369 (74.80%), Query Frame = 0 
Query:    7 NSSSTSPPKGNGGGKAAGGIGDGPQAIIGEGNDPHGGTEVLFIRHAESRNNVLHAEVGAKYNFDPKYLKQMEKEVASLRSEDADLSDKGHAQAELLGEHLEERLRGRRVLVVSSPMQRAIKTILPAVTRLGLGPEAFACYGRYFEVGGCYLQDNVFKGTTRAELEGKYPLRCFDVHEDGWYAYTTEREGHAQALLRCELAWLWIHDLLMTGVPSDGTTREGWGEGGGGGGRKYDTIVLVGHGEFMHYIMKKIVGGGALSSALGFMHGNTAITTLQYHPSRGLLVRGLNSLEHLPRDLKTGHTLADGWWWV-----REGGGPVGREGGRGREREPVNLTRAHINTHVRLYRELVPSLQP---SIDSPLIH 368
            N  S++P   + GG+A  GIGDG +A++   +DPHGGTEVLFIRHAESRNNVLHAEVGA+YNFDP   + MEKEVASLRSEDADLS+KG  QAE LGE+L ERLR RRVLVV+SPMQRAIKTI P VTRLG+GPE FACYGRYFEVGGCYLQD V+ GT+RAELEG Y L+CFDV E+GWYA++ EREGH QALLRCE AWLWI D+L+ G   +    +G G GG GGGR YDTIV+VGHGEFMHY+MKK+VGGG+LSSALGF+HGNT I+TLQYHPSRG LVR LN LEHLP  L+TGH LADGWW V          P+        E EP      H+ T     R L PSL P    +D+  +H
Sbjct:    4 NDISSNPD--DCGGEALQGIGDGMRAMM---DDPHGGTEVLFIRHAESRNNVLHAEVGARYNFDPNLHELMEKEVASLRSEDADLSEKGFVQAERLGEYLAERLRQRRVLVVTSPMQRAIKTIRPLVTRLGIGPEDFACYGRYFEVGGCYLQDRVYTGTSRAELEGTYKLQCFDVEEEGWYAHSKEREGHPQALLRCEQAWLWIQDVLLAGALPNAVDGDGRG-GGRGGGRSYDTIVVVGHGEFMHYVMKKMVGGGSLSSALGFVHGNTGISTLQYHPSRGALVRSLNVLEHLPPSLRTGHALADGWWEVVPRPLSSSQRPLIHRFENLPEEEP----GLHMATQAIRQRYLPPSLPPYLTDVDAHSVH 362
The following BLAST results are available for this feature:
BLAST of NO21G00110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400Expect = 2.10e-123 / Id = 65.04SequenceEWM20660.1
Match NameE-valueIdentityDescription
EWM20660.12.100e-12365.04Histidine phosphatase superfamily, clade-1 [Nannoc... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00110NO21G00110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00110.1NO21G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00110.1.cds1NO21G00110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds2NO21G00110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds3NO21G00110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds4NO21G00110.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds5NO21G00110.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds6NO21G00110.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds7NO21G00110.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds8NO21G00110.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds9NO21G00110.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds10NO21G00110.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds11NO21G00110.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds12NO21G00110.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds13NO21G00110.1.cds13Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds14NO21G00110.1.cds14Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds15NO21G00110.1.cds15Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00110.1.cds16NO21G00110.1.cds16Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00110.1 ID=NO21G00110.1|Name=NO21G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp
ATGAGCAGTAACAGGGGCAACTCCAGCAGCACCAGCCCTCCGAAAGGCAA
TGGTGGAGGGAAAGCAGCCGGTGGCATCGGAGACGGCCCGCAGGCTATAA
TTGGCGAAGGGAACGACCCGCACGGTGGCACGGAGGTTCTCTTTATCCGA
CATGCCGAGTCTCGAAACAACGTATTGCATGCTGAGGTCGGAGCCAAGTA
CAACTTCGACCCTAAATACCTCAAACAGATGGAAAAAGAGGTCGCGAGTC
TGCGCAGCGAAGATGCCGATCTCAGTGATAAGGGCCATGCTCAAGCGGAG
CTGCTGGGGGAACACCTCGAGGAGCGCCTAAGAGGACGACGGGTCCTGGT
CGTCTCCTCGCCGATGCAACGCGCCATCAAGACCATCCTACCCGCGGTCA
CTCGCCTCGGGCTGGGCCCGGAGGCTTTCGCCTGCTACGGCCGATACTTC
GAGGTGGGAGGCTGCTACCTCCAAGACAACGTTTTTAAAGGAACAACAAG
AGCGGAATTAGAGGGGAAGTACCCGTTGCGATGCTTCGACGTGCACGAGG
ACGGTTGGTACGCCTACACGACGGAGCGGGAGGGGCATGCCCAGGCGTTG
CTACGGTGCGAACTCGCTTGGCTCTGGATCCACGATTTGCTGATGACCGG
CGTCCCCTCTGACGGCACGACGAGAGAAGGATGGGGAGAGGGAGGGGGGG
GAGGAGGGAGGAAATACGACACCATTGTCTTGGTGGGCCATGGAGAGTTC
ATGCACTACATCATGAAGAAGATAGTAGGCGGCGGAGCTCTATCTTCCGC
CTTGGGATTTATGCACGGCAACACGGCTATCACCACCCTGCAGTATCACC
CGTCCCGGGGCCTCCTCGTTAGGGGGCTAAACAGCCTCGAGCACCTGCCA
CGCGACCTCAAGACGGGCCACACGCTCGCAGACGGGTGGTGGTGGGTGAG
GGAGGGAGGAGGGCCCGTCGGGAGGGAGGGAGGGAGAGGGAGGGAGAGAG
AGCCCGTGAATCTGACACGCGCGCACATCAATACACACGTCCGCTTGTAC
AGGGAGTTGGTGCCTAGCCTTCAACCTTCCATAGACAGCCCGCTCATCCA
CCGCTTCGAGGACCTTCAACGAGAAGAGCCGGGTCTCTACACAGCCAGCC
AGGCCCTCCGGCAACGGTACCTCCCTCCCTCCCTCCCTCCTTACCTCAGC
GACGTCGACGCACACTCGGTTCATTTCGTGGCCTTGGCGCATGGACAGTC
GACAGTGGTTGGCGTGGCGCTTTACGACCCGCGGTTCAACCGACTCCGGC
AGGTGATCGTCATTCCCGCCTTCCGAAGGCAGGGGCTGGGCTCGGGCCTG
GTGGCGTCCGTCAAGGGAGAAGCGCGGAGATACGGGCACCGCACCCTCTG
TGTCCACGCGCCCGTGGAGAGGATGAAGGACTTCTACGTGACCAAGAACA
GTTTCGAGGAGGGAGGGAGGGAGAGAGAGAAGGAGGCAGGGGTGTACGTC
GACAAGAGAGGGAACAAGTGCCAAAAGCTTTGGGTCCAACTGTAA
back to top

protein sequence of NO21G00110.1

>NO21G00110.1-protein ID=NO21G00110.1-protein|Name=NO21G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MSSNRGNSSSTSPPKGNGGGKAAGGIGDGPQAIIGEGNDPHGGTEVLFIR
HAESRNNVLHAEVGAKYNFDPKYLKQMEKEVASLRSEDADLSDKGHAQAE
LLGEHLEERLRGRRVLVVSSPMQRAIKTILPAVTRLGLGPEAFACYGRYF
EVGGCYLQDNVFKGTTRAELEGKYPLRCFDVHEDGWYAYTTEREGHAQAL
LRCELAWLWIHDLLMTGVPSDGTTREGWGEGGGGGGRKYDTIVLVGHGEF
MHYIMKKIVGGGALSSALGFMHGNTAITTLQYHPSRGLLVRGLNSLEHLP
RDLKTGHTLADGWWWVREGGGPVGREGGRGREREPVNLTRAHINTHVRLY
RELVPSLQPSIDSPLIHRFEDLQREEPGLYTASQALRQRYLPPSLPPYLS
DVDAHSVHFVALAHGQSTVVGVALYDPRFNRLRQVIVIPAFRRQGLGSGL
VASVKGEARRYGHRTLCVHAPVERMKDFYVTKNSFEEGGREREKEAGVYV
DKRGNKCQKLWVQL*
back to top

mRNA from alignment at chr21:29777..33681+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00110.1 ID=NO21G00110.1|Name=NO21G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3905bp|location=Sequence derived from alignment at chr21:29777..33681+ (Nannochloropsis oceanica)
ATGAGCAGTAACAGGGGCAACTCCAGCAGCACCAGCCCTCCGAAAGGCAA
TGGTGGAGGGAAAGCAGCCGGTGGCATCGGAGACGGCCCGCAGGCTATAA
TTGGCGAAGGGGTACGTAGGGGAGTGTGGGATGGGAGAAGGAGGGAAGCA
CAAAAATGTATGGCTGATAGAAGAAGGAGGCGTGATCGTTTGGGGGCATT
TGGACGGGATAGATGCGTAGATTGGTGCCGGAGGGCAGAAGCAAGGACAT
ACACTGAGAATTACCACTCCCTCTCCTTCCCCCGCCCACTAGAACGACCC
GCACGGTGGCACGGAGGTTCTCTTTATCCGACATGCCGAGTCTCGAAACA
ACGTATTGCATGCTGAGGTACGATTTGAACACGAAAAATGAGTCAACATG
TGCAACGTCCCTCCCATTCCTCCCCTTCCCTCTCCTCCCATCCTGCTCTT
GTCTACACCTCCACTTTATTTTCATCTCTCAATCTTCTGCCTCGATTTCT
CCATCCTTTAGGTCGGAGCCAAGTACAACTTCGACCCTAAATACCTCAAA
CAGATGGAAAAAGAGGTATGCATCTGCCTCCCTTTTCGGTCCCCTCTTCC
TTCAGCTCTTTCGCCCCACCCTCCTCACCCCCTCCCTCCCTCCGTTCCGT
TTCCTACTACCCCTTTCTTCTTTCTCTTCAGGTCGCGAGTCTGCGCAGCG
AAGATGCCGATCTCAGTGATAAGGGCCATGCTCAAGCGGAGCTGCTGGGG
GAACACCTCGAGGAGCGCCTAAGAGGACGACGGTAGGAAGCAAGGGAGGG
AGGGAAGGAGGGGGGCCGCACAGGTTTCATACTTTCTGGGCCGTTTCATT
TTTGAATGCTCTCATCATCAGGGCCGCCAGATTTCTAAGATTCGTTATTA
TTGTCGTAATAAATCTAACATCAAATACAAATTCGTAATATGCAGGGTCC
TGGTCGTCTCCTCGCCGATGCAACGCGCCATCAAGACCATCCTACCCGCG
GTACGTCCCTCCCTTCCTCTCTCCCTCCTTCCCTCTTTCCCTCCCTCCCT
TCCTCCCTTCCTCCCTCCCTTCCTCCCTTCCTCCCTCCATTCGATCCCGT
TCCACTCCCAAACAAGCCTCCCTTTCCCCCCTCCCTCGCTACTACTACTA
CTTTCGCCACCCAGGTCACTCGCCTCGGGCTGGGCCCGGAGGCTTTCGCC
TGCTACGGCCGATACTTCGAGGTATGACCATTCCCTCCCTCCCTCCCTCC
CTCCCTCTTCCTTTCTCCCCTCCACTGCTTCCTCCTTCCACAACCCCTTC
CTCTCTCCCGCCTCTCTCCACTTCTCCTTAGGTGGGAGGCTGCTACCTCC
AAGACAACGTTTTTAAAGGAACAACAAGAGCGGAATTAGAGGGGAAGTAC
CCGGTAGGAAGGGAGGGAGGGAGGGGAAGATGAAACAGATGAAGAGTGAC
TGAAAGTTATTTCCCCGCTTACACACACACACACACACACACACACGCAT
ATGTATATATATTATATATATATATATATATATATATATATACGTGGCCA
TACTCATCCACACCAACATACCTACATACGTGTGCCTCCTTCCTCACGTA
CGTGGCAGTTGCGATGCTTCGACGTGCACGAGGACGGTTGGTACGCCTAC
ACGGTATGTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCC
CTCCTTTCTTCGTCTGACCCTCCATCCTCCACTCCTTCCCTCCATCTCCC
TCCCTTTCCTCTCTTTTTCCCTTTACAGACGGAGCGGGAGGGGCATGCCC
AGGCGTTGCTACGGTGCGAACTCGCTTGGCTCTGGATCCACGATTTGCTG
ATGACCGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGAGAGGG
AGGGAGGGAGGGGCAAGAGCATTTTCCCCCTCCATCGTGTTTCTAAGTCT
TTTTTTAATATCTTTACATATCTCGTGCTCCTAGGCGTCCCCTCTGACGG
CACGACGAGAGAAGGATGGGGAGAGGGAGGGGGGGGAGGAGGGAGGAAAT
ACGACACCATTGTCTTGGTGGGCCATGGAGAGTTCATGCACTACATCATG
AAGAAGGTGAGAAGCTGCACTCTTCTTTTCTTCTTCCCTCTCTCCCTCCT
TTCCTCCCTTTCTCTCTCTTTCCCTTCAAATCAAATCCCTGCTCTTTCTT
GACAGCCAGCCAAATACACTCATCCCCTCTCTTCCCCTCTCCCTCCTTCC
CTTCCTTCCTCCTTTGCCTCGCCTTCTCTACCTGATGATCTAGACCCCCT
CCCTCCCTCCCCATCTCCCTCCCCCCCTCCCTCCCCACCTCCCTCCCTCC
CTCCCTTCCCTTCCCCTTCAAGATAGTAGGCGGCGGAGCTCTATCTTCCG
CCTTGGGATTTATGCACGGCAACACGGCTATCACCACCCTGCAGGTACGC
CCCTCCCCTTGCCCTCCCTCGCTCGCTTCCTCCCCCCCTTCCTGGACATA
CCGGCCATCTACCCTTCCATTCCCCCTCCCTCCTCCCCGCCCTCCTCCCC
GCCCTCCTTCCCAGTATCACCCGTCCCGGGGCCTCCTCGTTAGGGGGCTA
AACAGCCTCGAGCACCTGCCACGCGACCTCAAGACGGGCCACACGCTCGC
AGACGGGTGGTGGTGGGTGAGGGAGGGAGGAGGGCCCGTCGGGAGGGAGG
GAGGGAGAGGGAGGGAGAGAGAGCCCGTGAATCTGACACGCGCGCACATC
AATACACACGTCCGCTTGTACAGGGAGTTGGTGCCTAGCCTTCAACCTTC
CATAGACAGCCCGCTCATCCACCGGTAGGCTAATCATTCATTCTCATGTT
CTTTCTCTCGCATTGCCGTTTCCTCCTCCCCTTTCGTTTTCTCCTTTCCT
CTGACCCTCCCTCCCTTATTCCGTCCCATTCCCCTCACTTTTCCCCCCTT
TATTTTTCTCGCCCCTCCCTTCTTCTCCTAATGTCCTCCCTCCCTCCTTT
CCTCCCTCCCCAGCTTCGAGGACCTTCAACGAGAAGAGCCGGGTCTCTAC
ACAGCCAGCCAGGCCCTCCGGCAACGGTACCTCCCTCCCTCCCTCCCTCC
TTACCTCAGCGACGTCGACGCACACTCGGTTCATTTCGTGGCCTTGGCGC
ATGGACAGGTGAAGGGGAGGGAAGAAGGGAGGGAGGGAGGGAGGGAGGGA
GGGATGGATGGATCGATGGACAACTTGAAGAAAGAGAAAGCTGTTCTCGT
GAATAAATATCTATTGGTAAATCTTCTCTCCCTCCCTCCCTCCCTCCCTC
TTTCCTTTCCAGTCGACAGTGGTTGGCGTGGCGCTTTACGACCCGCGGTT
CAACCGACTCCGGCAGGTACGTCAGAGGGAGGGACGGATGGAGGGAAGGA
GAGAGGGAGGGATAGACGTGTAGCGCTACATGTACAAAATAATGATGACG
TAGCTAGAGCAGCGCCGCACTCAACCTCTCGTTCCTCCCTTCCTCCCTCC
CTCCCTATTTTTGTGCAGGTGATCGTCATTCCCGCCTTCCGAAGGCAGGG
GCTGGGCTCGGGCCTGGTGGCGTCCGTCAAGGGAGAAGCGCGGAGATACG
GGCACCGGTAAGGAGAGCGGGAGGTAGGGAGGGAAAACACGAGTAGGGAA
GATTCGATCATTTTCACACTTTTGACGTTTGAACATTCTCTCTTATCTCT
TCCCTCATCCTCCTTCCCTCCCTCCTTTCCTCCCTCCCTCCCTCCCTGCA
GCACCCTCTGTGTCCACGCGCCCGTGGAGAGGATGAAGGACTTCTACGTG
ACCAAGAACAGTTTCGAGGAGGGAGGGAGGGAGAGAGAGAAGGAGGCAGG
GGTGTACGTCGACAAGAGAGGGAACAAGTGCCAAAAGCTTTGGGTCCAAC
TGTAA
back to top

Coding sequence (CDS) from alignment at chr21:29777..33681+

>NO21G00110.1 ID=NO21G00110.1|Name=NO21G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=1545bp|location=Sequence derived from alignment at chr21:29777..33681+ (Nannochloropsis oceanica)
ATGAGCAGTAACAGGGGCAACTCCAGCAGCACCAGCCCTCCGAAAGGCAA
TGGTGGAGGGAAAGCAGCCGGTGGCATCGGAGACGGCCCGCAGGCTATAA
TTGGCGAAGGGAACGACCCGCACGGTGGCACGGAGGTTCTCTTTATCCGA
CATGCCGAGTCTCGAAACAACGTATTGCATGCTGAGGTCGGAGCCAAGTA
CAACTTCGACCCTAAATACCTCAAACAGATGGAAAAAGAGGTCGCGAGTC
TGCGCAGCGAAGATGCCGATCTCAGTGATAAGGGCCATGCTCAAGCGGAG
CTGCTGGGGGAACACCTCGAGGAGCGCCTAAGAGGACGACGGGTCCTGGT
CGTCTCCTCGCCGATGCAACGCGCCATCAAGACCATCCTACCCGCGGTCA
CTCGCCTCGGGCTGGGCCCGGAGGCTTTCGCCTGCTACGGCCGATACTTC
GAGGTGGGAGGCTGCTACCTCCAAGACAACGTTTTTAAAGGAACAACAAG
AGCGGAATTAGAGGGGAAGTACCCGTTGCGATGCTTCGACGTGCACGAGG
ACGGTTGGTACGCCTACACGACGGAGCGGGAGGGGCATGCCCAGGCGTTG
CTACGGTGCGAACTCGCTTGGCTCTGGATCCACGATTTGCTGATGACCGG
CGTCCCCTCTGACGGCACGACGAGAGAAGGATGGGGAGAGGGAGGGGGGG
GAGGAGGGAGGAAATACGACACCATTGTCTTGGTGGGCCATGGAGAGTTC
ATGCACTACATCATGAAGAAGATAGTAGGCGGCGGAGCTCTATCTTCCGC
CTTGGGATTTATGCACGGCAACACGGCTATCACCACCCTGCAGTATCACC
CGTCCCGGGGCCTCCTCGTTAGGGGGCTAAACAGCCTCGAGCACCTGCCA
CGCGACCTCAAGACGGGCCACACGCTCGCAGACGGGTGGTGGTGGGTGAG
GGAGGGAGGAGGGCCCGTCGGGAGGGAGGGAGGGAGAGGGAGGGAGAGAG
AGCCCGTGAATCTGACACGCGCGCACATCAATACACACGTCCGCTTGTAC
AGGGAGTTGGTGCCTAGCCTTCAACCTTCCATAGACAGCCCGCTCATCCA
CCGCTTCGAGGACCTTCAACGAGAAGAGCCGGGTCTCTACACAGCCAGCC
AGGCCCTCCGGCAACGGTACCTCCCTCCCTCCCTCCCTCCTTACCTCAGC
GACGTCGACGCACACTCGGTTCATTTCGTGGCCTTGGCGCATGGACAGTC
GACAGTGGTTGGCGTGGCGCTTTACGACCCGCGGTTCAACCGACTCCGGC
AGGTGATCGTCATTCCCGCCTTCCGAAGGCAGGGGCTGGGCTCGGGCCTG
GTGGCGTCCGTCAAGGGAGAAGCGCGGAGATACGGGCACCGCACCCTCTG
TGTCCACGCGCCCGTGGAGAGGATGAAGGACTTCTACGTGACCAAGAACA
GTTTCGAGGAGGGAGGGAGGGAGAGAGAGAAGGAGGCAGGGGTGTACGTC
GACAAGAGAGGGAACAAGTGCCAAAAGCTTTGGGTCCAACTGTAA
back to top
Synonyms
Publications