Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:22236..28411 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00080.2 vs.
Match: XP_005855616.1 (DNA topoisomerase III [Nannochloropsis gaditana CCMP526]; EKU20747.1 DNA topoisomerase III [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 1472.6 bits (3811), Expect = 0.000e+0
Identity = 691/798 (86.59%), Postives = 746/798 (93.48%), Query Frame = 0
Query: 35 MVAEKPSICNSIAHALCGGAELSTRGRSPPVHEFHGRFEGQAARIRVTSVTGHVFSTDFPGQYSNWEAVDPVDLFRAPTCKEPTSKFITHHLASEGKGADVLVLWLDCDREGENICFEVIDCMQQGFKSHTRILRAHFSAITPKDIQHALQNLGVPNKNEALSVDARQELDLKVGVAFSRFQTRYFQGKYGDLDSTLVSYGPCQTPTLGFCVQRHDNIQSFTPEKFWYVAATIVKDGVSVPLEWNRGRLFDQEVAHVFLHLVGEAGTVTVDKVLKSEQRRTKPSAMNTVEMLKEASKVLGMGPAQTMSIAERLYLSGYLSYPRTESTAYPESFDVRGSLALQTSHPIWGDYAKGLLEEGVARPRAGLDAGDHPPITPVRALDSTEFPGDMGRLYELVTRHFLATLSHDARFLQTKVLLSSTSGENFTVAGKIMIDPGYLAVLLQSKDENKLPDFREGERFSFASLALRDGQTAPPGYLTESELIEKMEKHGIGTDASISSHINNIVERNYVHIGDGRTLIPNP-------LGIVLVHGYLRIDADLVLPKVRAQIESECTLIAKGLADMQSVVDHSLKNFEAKFRYFAEHIDLMDSLFEATFSPLAATGKPLSKCGKCKRFMKYIHLKPQRLHCPTCNETYALPQNGTIKLYKELKCPLDDFELLLFSLGNSERAQGKSFTLCPYCYSHPPFEGLNIMGCDSCMHPTCKHSLTRNGVCPCPGESGATCPGTLVLDINSRPNWKMSCNRCNNLVLFK--GVNIHNIKPLAGQYCDACGSAILAVDFHKDKTPLPGKSNR 824
MVAEKPSICN+IA+ALC GAE+STRGRSPPVHEFHGRFEGQ+ARIRVTSVTGHVFSTDFPGQYSNWEAVDPVDLF+APT KEPTSKFITHHLASEGKGAD+LVLWLDCDREGENICFEVI+CMQ GFK+HTRILRAHFSAITPKDI ALQ LGVPNK+EALSVDARQELDLKVGVAFSRFQTRYFQGKYGDLD+TLVSYGPCQTPTLGFCVQRHD IQSF+PEKFWY+AA + KDG +V LEW RGR+FD EVAHVFLHLVGEAG+V VDKV KSEQRRTKP+A+NTVE+LKEASKVLGMGPAQTMS+AERLYLSGYLSYPRTESTAYPESFDVRG+L+LQ SHP WGDYAKGLL+EGV+RPRAG+DAGDHPPITPVRALD TEFPGDMGRLY+LVTRHFLA+LSHDARFLQTKVL SS GE+F+ +GKIMIDPGYLAVL QSKDE+KLPDF+EG+ F+F+SL L DG T+PPGYLTESELIE+MEKHGIGTDASISSHINNIVERNYVH+GDGRTLIPNP LGIVLVHGYLRIDADLVLPKVRAQIESECTLIAKG ADMQSVVDHSL+NFEAKFRYFAEHIDLMDSLFEATFSPLAATGKPLS+CGKC+RFMKYIHLKPQRL+CP CNETYALPQNGTIKLYKELKCPLDDFELLLFSLGN++ AQGKSF LCPYCYSHPPFEGL+IMGCDSCMHPTCKHSLTRNGVCPCPGESGA CPGTLVLD+NS PNWKM+CNRCNNLVLFK G NIH+IKP QYC+ CGSA+L +++ KDK+PL G+ R
Sbjct: 1 MVAEKPSICNAIANALCAGAEMSTRGRSPPVHEFHGRFEGQSARIRVTSVTGHVFSTDFPGQYSNWEAVDPVDLFKAPTRKEPTSKFITHHLASEGKGADILVLWLDCDREGENICFEVIECMQPGFKAHTRILRAHFSAITPKDIHRALQKLGVPNKDEALSVDARQELDLKVGVAFSRFQTRYFQGKYGDLDATLVSYGPCQTPTLGFCVQRHDEIQSFSPEKFWYLAAAVAKDGANVALEWGRGRVFDHEVAHVFLHLVGEAGSVAVDKVQKSEQRRTKPTALNTVELLKEASKVLGMGPAQTMSVAERLYLSGYLSYPRTESTAYPESFDVRGALSLQVSHPTWGDYAKGLLQEGVSRPRAGVDAGDHPPITPVRALDPTEFPGDMGRLYDLVTRHFLASLSHDARFLQTKVLFSSECGESFSASGKIMIDPGYLAVLAQSKDESKLPDFQEGDHFTFSSLGLGDGHTSPPGYLTESELIERMEKHGIGTDASISSHINNIVERNYVHVGDGRTLIPNPLGDCGNILGIVLVHGYLRIDADLVLPKVRAQIESECTLIAKGQADMQSVVDHSLRNFEAKFRYFAEHIDLMDSLFEATFSPLAATGKPLSRCGKCRRFMKYIHLKPQRLYCPICNETYALPQNGTIKLYKELKCPLDDFELLLFSLGNAQGAQGKSFPLCPYCYSHPPFEGLSIMGCDSCMHPTCKHSLTRNGVCPCPGESGAACPGTLVLDVNSYPNWKMACNRCNNLVLFKVTGGNIHSIKPATSQYCEVCGSAVLTIEYQKDKSPLSGEEGR 798
The following BLAST results are available for this feature:
BLAST of NO21G00080.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 0.00e+0 / Id = 86.59 Sequence XP_005855616.1
Match Name E-value Identity Description
XP_005855616.1 0.000e+0 86.59 DNA topoisomerase III [Nannochloropsis gaditana CC... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G00080.2 ID=NO21G00080.2|Name=NO21G00080.2|organism=Nannochloropsis oceanica|type=mRNA|length=4133bp back to top protein sequence of NO21G00080.2
>NO21G00080.2-protein ID=NO21G00080.2-protein|Name=NO21G00080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=830bp back to top mRNA from alignment at chr21:22236..28411-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00080.2 ID=NO21G00080.2|Name=NO21G00080.2|organism=Nannochloropsis oceanica|type=mRNA|length=6176bp|location=Sequence derived from alignment at chr21:22236..28411- (Nannochloropsis oceanica)ATGCATCTCCTTCCCATTTTCATCCCCATCCTCTCAGCGACAGATA
AGGAGTACCACACTGTGCTTCCACGAATGGCGGGCGGCGGCGGCAAGCTC
GTGGTGATGGTGGCTGAGAAGCCCAGTATTTGCAATTCCATCGCTCATGC
GCTGTGCGGTGGGGCGGAACTGAGCACACGTG GTACGTCGAAGGGAAACA
TGGGGAGAAGTTGCTGGAGAGGAGGTTATTTCCAACAAAATGATGCAATC
TTTTCAATATTATAGGCTATCAAGGTTTCTGGTTGTACAAGTCTCTACCT
TATACTCTGTCTTCGTCATGGTATCTCTATTTTTAAAGGCATTCCCTTTC
CCTTTTCATCCTACACCACAGGACGTTCGCCACCTGTGCATGAGTTTCAC
GGGCGCTTCGAAGGGCAGGCGGCGCGCATCCGCGTCACGTCGGTCACTGG
TCACGTATTTTCTACAGATTTTCCGGGTCAATATAGCAATTGGGAAGCGG
TGGACCCCGTCGACTTATTTCGTGCTCCAACATGCAAAGAGCCGACCAGC
AAATTCATAACGCACCACCTGGCTTCGGAGGGCAAAGGGGCAGATGTCCT
CGTCTTGTGGCTAGATTGCGATCGCGAGGGAGAGAATATCTGCTTTGAGG
TCATTGACTGCATGCAACAAGGCTTCAAATCTCATACACGCATCCTCCG G
TGAGTTTATGGGTGGCGGTGGCGTATAGGGCCAAGGGAAATGGAGTGCTT
GTCTGGGCGCTAAGTCTATTGTGAGCTGCGTAATTCACAAAGCTTAATGA
CGTTCATTCATTTCTCACCTATCATATTTCGCAGCGCACATTTCTCCGCC
ATTACCCCTAAAGACATCCAACACGCCCTGCAGAATCTAGGAGTGCCCAA
CAAGAACGAAGCCCTCTCAGTAGATGCACG GTGAGTGTCAGGAATGGGGC
AGGTAGGGAACCATCAACTATTACATTCGGCCTTGCACGTTCTCACATCT
CTATCACATTGCCAGATTGAGCACCACTGAAGTTATATTTTTCATAAATT
CATTAAATGACAGGCAAGAGCTGGACCTCAAAGTTGGCGTAGCATTCTCC
CGCTTTCAGACTCGTTACTTTCAGGGCAAGTACGGGGACCTCGACTCGAC
CCTAGTTTCTTACGGACCCTGTCAGACGCCCACGCTCGGATTCTGCGTTC
AGCGTCATGACAATATCCAATCATTTACTCCCGAGAAGTTTTGGTATGTG
GCCGCGACCATCGTCAAGGATGGCGTGAGCGTGCCGCTCGAATGG GTAAG
TCACGGAGTGGAAAGTGTGCCAATTGAGCCTATCGAACAAGTGGGATATT
TCTCTGTGAACCTGTGATATATGTGATGTTCTCTCTTTTATGCTGCGCGA
GTCTCTCGTTTCATCCTCAACTTTTTTCCAACAACTGATTCGTGAGTTTC
TGCGGGGCGGGCTTATTTTGGTGCTCAAAATATGATAGAAGGAGATGTCT
TTATGTCGGTGGCAAAGCGCCTAAAGGCGAATAAACCCCTAAAAAATAAA
AACAATAAAAAACTTAAATAACTTTCTGTATAGTCCGTAAGTGCCGCAAA
CAGCGATTGGGGGGCCGTAACGGCGCTTTGTCGCAGTTGCATACGGTGAA
TCGACGCGATATATCCTCAGTCAAGACGGCGGCATCACATGGATCCGTCC
CACGCTTCTAGCATCCAACAGTCGGAACAGCGTCACAGAATGCTTTGAAT
AAGCTAAAATACGTACGAATCCCTTCTTCCTTACAACGTGACAGAACCGA
GGCCGCCTGTTCGACCAAGAAGTGGCCCACGTCTTCCTGCACCTGGTGGG
AGAGGCGGGTACAGTCACAGTAGATAAGGTTCTAAAGTCCGAGCAGCGTC
GCACGAAGCCCTCTGCCATGAATACTGTCGAAATGCTCAAGGAGGCATCG
AAAGTTCTGGGTATGGGGCCTGCTCAGACCATGTCCATCGCCGAGAGGCT
TTACTTGTCGGGCTACCTGTCCTACCCCCG GTATGTTGTTATTCATATTA
CCTCTTTGGAGCGACGTTTGGAAAATGTAGATTCAGGCTCTCATCGTCTT
CAATGTCCCTCACACGCACAGCACCGAGTCCACTGCCTATCCCGAGAGCT
TTGACGTGCGAGGTTCGCTGGCCTTGCAAACGTCTCACCCCATCTGGGGC
GACTATGCCAAGGGCCTTTTAGAAGAGGGGGTGGCACGACCCCGCGCAGG
ACTAGACGCAGGCGATCATCCGCCCATTACCCCTGTCCGTGCTTTGGATT
CGACG GTGAGCTCGTGATTTTGGGATATTTGAGTTTCTGGTTTGCTCAGG
AGAAGTGCCCTCTCACCACCATTATAAATCACACTCGAAATTCACAAATC
CAGGAGTTTCCGGGTGATATGGGACGGCTCTATGAGCTGGTTACTCGTCA
CTTCCTTGCAACTCTATCCCATGACGCGCGCTTCCTCCAGACCAAGGTCC
TGCTATCCTCGACGAGCGGGGAGAATTTCACTGTTGCCGGCAAAATTATG
ATTGACCCGGGCTACCTCGCGGTATTGTTGCAGTCCAAG GTGAGGAAATG
GGAGGATTATTGTGCATCAAAGTCTGGGAGAAAAGTGGCGAGCGCATACC
GTTGCTTTAATTGAACTGATAACATGATGCAAATGCTCAGTGCCTACTGA
CTGTCTTAAAATATACGTAGGACGAGAACAAGTTGCCAGATTTTCGAGAA
GGAGAGCGCTTTAGCTTTGCTTCGCTAGCCCTTCGTGACGGGCAGACAGC
CCCGCCAGGCTACCTGACTGAGAGCGAGTTAATTGAGAAGATGGAAAAGC
ATGGCATCGGCACCGACGCCTCCATATCCTCACATATCAACAACATTGTT
GAACGCAACTACGTGCACATTGGTGACGGTCGTACCCTTATTCCCAACCC
TTTGG GTGAGTAATGATGAGAAGAAAAAATGAGAGGGCGGGGGACTTGGA
GAGTGACTTAGCCATACGCACCCACAACGCTCGAGATCGTTTCTTAACTT
GTAATATGTACACTACAGGCATCGTGCTTGTCCATGGCTATCTGAGAATA
GACGCGGACCTTGTCCTGCCCAAGGTGCGGGCACAGATCGAGAGCGAGTG
CACACTTATCGCCAAGGGACTG GTAAGTGTTATGGAGGAAAAAGATAATT
GAATGACAATAAATCCTTTTGCAAATTTCGTGGTTGCGCAAAGATTTCCG
TAACCGAAATCTGATCCATCTTCTCCAACCATTCAATTCATCACTGACTG
CCTTCCTGCGGTCCTTACCCCACCATATGCACTCAAAAGGCGGACATGCA
GAGCGTGGTGGATCATTCGCTAAAGAACTTTGAAGCCAAGTTTCGGTACT
TTGCCGAGCATATCGATCTGATGGACTCCCTGTTTGAAGCAACTTTCAGC
CCGCTG GTTAGTGTAGGAAGGAGACAGATAGTAAGGGAAATATGGAAGAA
ATAGGAAAGACGAAAGGCATTACATCTACTCTCTTTCTTCATCACCCATT
TAATCAGGCGGCTACGGGCAAGCCCTTGTCCAAGTGTGGGAAGTGCAAGC
GCTTCATGAAGTACATCCACCTCAAGCCTCAGCGATTGCACTGCCCAACC
TGCAACGAGACATATGCGCTACCACAG GTAAGTCTCGACGAAATGAGAAA
AGTGCTGAAGAGCAGATTACGAAAAATCCATGTCACTTATTTCCAATATA
TTCCGGAAACAGAACGGCACGATCAAACTCTACAAGGAACTCAAGTGCCC
TTTGGACGACTTTGAGCTCCTCCTCTTTTCTCTAG GTAAGAAAGGGGAAA
GAGGAAATTAGAGGGGGCTGAGGTTACACTCTGCTCACACATGTGCATCG
CTTGCAGGGAATTCGGAGCGCGCCCAGGGCAAGTCATTCACCCTCTGCCC
GTACTGCTACTCCCATCCGCCATTCGAAG GTAAGCAGCAAGGCGAAAGAA
ATTGTCTATATTCTTCTCCTAGTTTCATCAATCGCCTCCAACTCATTCCC
TCTTCCTCTTAAGGGCTAAATATTATGGGTTGCGACTCATGCATGCACCC
GACGTGCAAGCACTCCCTCACACGGAATGGGGTCTGCCCTTGTCCTGGCG
AGAGTGGGGCGACCTGCCCAGGCACGCTGGTTCTGGACATAAATTCCCGC
CCTAATTGGAAGATGTCTTGCAACCGCTGCAATAACCTGGTCCTATTCAA
G GTAAGATGGAAGGAAGGAATGGGAAGGATAGGAGAGAGCGGCCAGGGTT
TCAATGGCTTTTTGCATGGCACCTGCTGTTGTATGGTTGTCAAGTCTTTA
CATTCTCTCCCCTCCTCTCTCCCTGGCTTCCTTCTTCAATTTTTAGGGCG
TCAACATTCACAACATCAAGCCACTCGCGGGCCAGTACTGCGATGCCTGC
GGCTCGGCCATCCTCGCGGTGGATTTTCACAAAGACAAGACGCCCTTGCC
TGGTAAGTCAAATAGGCATTCAAAGCGCTGCCAATGA back to top Coding sequence (CDS) from alignment at chr21:22236..28411-
>NO21G00080.2 ID=NO21G00080.2|Name=NO21G00080.2|organism=Nannochloropsis oceanica|type=CDS|length=2490bp|location=Sequence derived from alignment at chr21:22236..28411- (Nannochloropsis oceanica) back to top