NO21G00060.1, NO21G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00060.1
Unique NameNO21G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1722
Alignment locationchr21:16731..18452 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:16731..18452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00060.1 vs.
Match: OAE22383.1 (hypothetical protein AXG93_2318s1300 [Marchantia polymorpha subsp. ruderalis]; PTQ32734.1 hypothetical protein MARPO_0096s0075 [Marchantia polymorpha])

HSP 1 Score: 458.8 bits (1179), Expect = 2.000e-125
Identity = 228/397 (57.43%), Postives = 290/397 (73.05%), Query Frame = 0 
Query:   26 MKAVTWQGARDIRV-VEVDRPALAHPQDVILRVTSTAICGSDLHLYTGNFPKSSMAKGDILGHEFMGIVHEIGEDVKGYKPGDRVVCSFDIACGHCHSCHH-QLFSLCDMSNDSTAQEALYGDKSGGYFGYSHLTGGWAGGQADYVRVPFAEQNLLKVPENHARHTDLDVLLLSDVLGTAWHACEMGEVKEGDTVAIWGAGPVGMLAAQCAQHRGAAKVILIDQELYRLEFAEHRLNPRTLVTLNGRQLKQQNCGVAKAVREILPHGPDVAIECVGFHYASTFLHRAEMTLGLETDPADMMNEIFTTVRKGGRVSVVGVYVGHVNHFNFGCFMEKGLTMKAGQTPVQRYWKMLLEKVEKKELDPRVIITHELPLEEAAKAYQIFNNKENGCVKVVLH 421
            MKAV W G +D+RV  +   P +  P+DV+L+VTS+AICGSDLHLY GN     M  GDILGHEFMG+VHE+G DVK  K GDRVV  FDI CG C+ C   Q FS C  +N S  ++A+YGD++ G+FGYSHLTGG+ GGQA+YVRVPFA+ N LKVPEN +   D  V+LLSD+L TAWHA E+GEV +GD VAIWGAGPVG+LAA CAQ RGA +V LID   YRL+FA+ +L    L T+N +Q K     V +A+R++  HG DV I+ VG HYA + LH+ +M   LETD  +++N+I   VRKGGRVS+VG Y G+ NHFN G FMEK LTM+ GQTPVQ+YWK LLE V+K +L+P ++ITH+ PLE+A + Y+ FN+K + C+KVV+H
Sbjct:   20 MKAVEWHGKKDVRVNSKRPMPLVTDPRDVVLQVTSSAICGSDLHLYLGNM--LGMVPGDILGHEFMGVVHEVGPDVKSVKKGDRVVVCFDIGCGECYFCSKLQAFSCCGNTNPSQEEKAMYGDRTAGFFGYSHLTGGYPGGQAEYVRVPFADVNTLKVPENLS---DEKVVLLSDILPTAWHANELGEVGQGDVVAIWGAGPVGILAAHCAQARGAKEVFLIDAVQYRLDFAKQKLPG--LRTINFKQEK-----VYEALRKVASHGIDVGIDAVGMHYADSVLHKLQMMTMLETDTPEIVNDIVYNVRKGGRVSIVGAYAGYTNHFNLGAFMEKSLTMRGGQTPVQKYWKHLLELVQKSQLNPSLVITHQQPLEKAPELYKTFNDKVDNCIKVVMH 404
The following BLAST results are available for this feature:
BLAST of NO21G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OAE22383.12.000e-12557.43hypothetical protein AXG93_2318s1300 [Marchantia p... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00060NO21G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00060.1NO21G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00060.1.cds1NO21G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00060.1 ID=NO21G00060.1|Name=NO21G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp
ATTTCATCCTATGAACGGCGTTTATCCGTTTTTACCCCTCTATGAGTATG
CTAAATACCTCTGCAGCTAACCTCCCCATCCACGAAGTAATCGATGGACA
AGTTGCGTCAAAACCAAAAAGAAGGAATGGCAGTGCCCATATCTGGCCCT
CGCGTCAAGGGAGAGCCGATGAAGGCCGTGACCTGGCAAGGTGCGCGCGA
TATTCGAGTTGTAGAGGTGGACCGCCCGGCATTGGCGCATCCGCAGGACG
TCATCCTCCGCGTCACTTCCACGGCGATTTGCGGCTCCGACCTGCATTTG
TATACTGGCAACTTTCCCAAGAGCTCCATGGCCAAGGGTGATATTTTGGG
GCATGAATTCATGGGTATCGTGCACGAGATTGGCGAGGATGTGAAGGGGT
ACAAACCAGGTGATCGCGTGGTTTGCTCCTTTGACATTGCCTGTGGACAC
TGTCACTCGTGCCACCACCAACTCTTCTCCCTTTGCGACATGAGTAACGA
CAGCACCGCTCAAGAGGCTTTGTATGGAGACAAAAGTGGAGGTTACTTTG
GGTACTCGCACCTGACGGGCGGCTGGGCAGGAGGCCAAGCCGATTACGTG
CGCGTTCCCTTTGCGGAGCAGAACCTTTTAAAAGTGCCTGAGAATCACGC
TCGACATACAGACTTGGACGTGCTACTTCTGTCAGACGTGCTCGGTACAG
CCTGGCATGCTTGTGAGATGGGTGAAGTGAAGGAGGGGGATACGGTCGCG
ATCTGGGGCGCAGGGCCAGTGGGGATGCTGGCAGCTCAGTGCGCTCAGCA
CCGGGGCGCGGCCAAGGTGATTTTGATCGATCAAGAGCTGTACCGCCTCG
AATTTGCTGAGCATCGCCTGAACCCTCGTACGCTTGTCACGCTGAATGGC
CGTCAGCTCAAGCAACAAAATTGTGGGGTGGCCAAGGCGGTACGCGAGAT
TCTTCCGCACGGGCCGGATGTGGCTATTGAATGCGTGGGATTTCACTACG
CGTCAACGTTCCTGCACCGGGCGGAGATGACCCTCGGTCTTGAAACGGAC
CCCGCTGACATGATGAACGAGATCTTTACCACTGTCCGCAAGGGTGGACG
GGTCAGTGTGGTGGGGGTGTATGTAGGCCACGTGAATCACTTTAATTTTG
GCTGTTTCATGGAAAAAGGCCTGACGATGAAGGCAGGTCAAACCCCCGTG
CAGCGCTACTGGAAAATGCTCTTGGAAAAAGTGGAGAAGAAGGAGTTGGA
CCCGCGTGTCATAATCACTCACGAGCTGCCGCTCGAAGAGGCGGCCAAGG
CTTACCAAATTTTTAACAACAAAGAGAACGGCTGCGTCAAGGTGGTGCTG
CATACCAAATTTTATAAAGGCCAGTACCTTGAGAAAGAAAAAGGTGTTAA
GGACGAAGAGGTAGCCGGGGCAGGAGGGTCACACTAAAGGGTAAGGACGG
ATGAGAAGATAGACGGGGACCAGGTAGTTTTGTAAGACAGTGACGTAAGA
CATTGATAGCCGGAAATGGGATAAATACATCGGCAATAAAGGGGGCGAGA
TTAGAGTAGTTGGACTCACAACGGCGTGCAGGGAGAAAGGCAGGTGGATT
GATTTGGATAGAGGGAAAGGTAAGAGAAGTATTTGAGTCCTTCAGACTCT
ACTTGAAAAAAAAAGCTGGACAATACAGCAATGGAGTAAAGACGAGAAAT
AATCAGCAATGGAGTAAAGACC
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protein sequence of NO21G00060.1

>NO21G00060.1-protein ID=NO21G00060.1-protein|Name=NO21G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MDKLRQNQKEGMAVPISGPRVKGEPMKAVTWQGARDIRVVEVDRPALAHP
QDVILRVTSTAICGSDLHLYTGNFPKSSMAKGDILGHEFMGIVHEIGEDV
KGYKPGDRVVCSFDIACGHCHSCHHQLFSLCDMSNDSTAQEALYGDKSGG
YFGYSHLTGGWAGGQADYVRVPFAEQNLLKVPENHARHTDLDVLLLSDVL
GTAWHACEMGEVKEGDTVAIWGAGPVGMLAAQCAQHRGAAKVILIDQELY
RLEFAEHRLNPRTLVTLNGRQLKQQNCGVAKAVREILPHGPDVAIECVGF
HYASTFLHRAEMTLGLETDPADMMNEIFTTVRKGGRVSVVGVYVGHVNHF
NFGCFMEKGLTMKAGQTPVQRYWKMLLEKVEKKELDPRVIITHELPLEEA
AKAYQIFNNKENGCVKVVLHTKFYKGQYLEKEKGVKDEEVAGAGGSH*
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mRNA from alignment at chr21:16731..18452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00060.1 ID=NO21G00060.1|Name=NO21G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp|location=Sequence derived from alignment at chr21:16731..18452+ (Nannochloropsis oceanica)
ATTTCATCCTATGAACGGCGTTTATCCGTTTTTACCCCTCTATGAGTATG
CTAAATACCTCTGCAGCTAACCTCCCCATCCACGAAGTAATCGATGGACA
AGTTGCGTCAAAACCAAAAAGAAGGAATGGCAGTGCCCATATCTGGCCCT
CGCGTCAAGGGAGAGCCGATGAAGGCCGTGACCTGGCAAGGTGCGCGCGA
TATTCGAGTTGTAGAGGTGGACCGCCCGGCATTGGCGCATCCGCAGGACG
TCATCCTCCGCGTCACTTCCACGGCGATTTGCGGCTCCGACCTGCATTTG
TATACTGGCAACTTTCCCAAGAGCTCCATGGCCAAGGGTGATATTTTGGG
GCATGAATTCATGGGTATCGTGCACGAGATTGGCGAGGATGTGAAGGGGT
ACAAACCAGGTGATCGCGTGGTTTGCTCCTTTGACATTGCCTGTGGACAC
TGTCACTCGTGCCACCACCAACTCTTCTCCCTTTGCGACATGAGTAACGA
CAGCACCGCTCAAGAGGCTTTGTATGGAGACAAAAGTGGAGGTTACTTTG
GGTACTCGCACCTGACGGGCGGCTGGGCAGGAGGCCAAGCCGATTACGTG
CGCGTTCCCTTTGCGGAGCAGAACCTTTTAAAAGTGCCTGAGAATCACGC
TCGACATACAGACTTGGACGTGCTACTTCTGTCAGACGTGCTCGGTACAG
CCTGGCATGCTTGTGAGATGGGTGAAGTGAAGGAGGGGGATACGGTCGCG
ATCTGGGGCGCAGGGCCAGTGGGGATGCTGGCAGCTCAGTGCGCTCAGCA
CCGGGGCGCGGCCAAGGTGATTTTGATCGATCAAGAGCTGTACCGCCTCG
AATTTGCTGAGCATCGCCTGAACCCTCGTACGCTTGTCACGCTGAATGGC
CGTCAGCTCAAGCAACAAAATTGTGGGGTGGCCAAGGCGGTACGCGAGAT
TCTTCCGCACGGGCCGGATGTGGCTATTGAATGCGTGGGATTTCACTACG
CGTCAACGTTCCTGCACCGGGCGGAGATGACCCTCGGTCTTGAAACGGAC
CCCGCTGACATGATGAACGAGATCTTTACCACTGTCCGCAAGGGTGGACG
GGTCAGTGTGGTGGGGGTGTATGTAGGCCACGTGAATCACTTTAATTTTG
GCTGTTTCATGGAAAAAGGCCTGACGATGAAGGCAGGTCAAACCCCCGTG
CAGCGCTACTGGAAAATGCTCTTGGAAAAAGTGGAGAAGAAGGAGTTGGA
CCCGCGTGTCATAATCACTCACGAGCTGCCGCTCGAAGAGGCGGCCAAGG
CTTACCAAATTTTTAACAACAAAGAGAACGGCTGCGTCAAGGTGGTGCTG
CATACCAAATTTTATAAAGGCCAGTACCTTGAGAAAGAAAAAGGTGTTAA
GGACGAAGAGGTAGCCGGGGCAGGAGGGTCACACTAAAGGGTAAGGACGG
ATGAGAAGATAGACGGGGACCAGGTAGTTTTGTAAGACAGTGACGTAAGA
CATTGATAGCCGGAAATGGGATAAATACATCGGCAATAAAGGGGGCGAGA
TTAGAGTAGTTGGACTCACAACGGCGTGCAGGGAGAAAGGCAGGTGGATT
GATTTGGATAGAGGGAAAGGTAAGAGAAGTATTTGAGTCCTTCAGACTCT
ACTTGAAAAAAAAAGCTGGACAATACAGCAATGGAGTAAAGACGAGAAAT
AATCAGCAATGGAGTAAAGACC
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Coding sequence (CDS) from alignment at chr21:16731..18452+

>NO21G00060.1 ID=NO21G00060.1|Name=NO21G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr21:16731..18452+ (Nannochloropsis oceanica)
ATGGACAAGTTGCGTCAAAACCAAAAAGAAGGAATGGCAGTGCCCATATC
TGGCCCTCGCGTCAAGGGAGAGCCGATGAAGGCCGTGACCTGGCAAGGTG
CGCGCGATATTCGAGTTGTAGAGGTGGACCGCCCGGCATTGGCGCATCCG
CAGGACGTCATCCTCCGCGTCACTTCCACGGCGATTTGCGGCTCCGACCT
GCATTTGTATACTGGCAACTTTCCCAAGAGCTCCATGGCCAAGGGTGATA
TTTTGGGGCATGAATTCATGGGTATCGTGCACGAGATTGGCGAGGATGTG
AAGGGGTACAAACCAGGTGATCGCGTGGTTTGCTCCTTTGACATTGCCTG
TGGACACTGTCACTCGTGCCACCACCAACTCTTCTCCCTTTGCGACATGA
GTAACGACAGCACCGCTCAAGAGGCTTTGTATGGAGACAAAAGTGGAGGT
TACTTTGGGTACTCGCACCTGACGGGCGGCTGGGCAGGAGGCCAAGCCGA
TTACGTGCGCGTTCCCTTTGCGGAGCAGAACCTTTTAAAAGTGCCTGAGA
ATCACGCTCGACATACAGACTTGGACGTGCTACTTCTGTCAGACGTGCTC
GGTACAGCCTGGCATGCTTGTGAGATGGGTGAAGTGAAGGAGGGGGATAC
GGTCGCGATCTGGGGCGCAGGGCCAGTGGGGATGCTGGCAGCTCAGTGCG
CTCAGCACCGGGGCGCGGCCAAGGTGATTTTGATCGATCAAGAGCTGTAC
CGCCTCGAATTTGCTGAGCATCGCCTGAACCCTCGTACGCTTGTCACGCT
GAATGGCCGTCAGCTCAAGCAACAAAATTGTGGGGTGGCCAAGGCGGTAC
GCGAGATTCTTCCGCACGGGCCGGATGTGGCTATTGAATGCGTGGGATTT
CACTACGCGTCAACGTTCCTGCACCGGGCGGAGATGACCCTCGGTCTTGA
AACGGACCCCGCTGACATGATGAACGAGATCTTTACCACTGTCCGCAAGG
GTGGACGGGTCAGTGTGGTGGGGGTGTATGTAGGCCACGTGAATCACTTT
AATTTTGGCTGTTTCATGGAAAAAGGCCTGACGATGAAGGCAGGTCAAAC
CCCCGTGCAGCGCTACTGGAAAATGCTCTTGGAAAAAGTGGAGAAGAAGG
AGTTGGACCCGCGTGTCATAATCACTCACGAGCTGCCGCTCGAAGAGGCG
GCCAAGGCTTACCAAATTTTTAACAACAAAGAGAACGGCTGCGTCAAGGT
GGTGCTGCATACCAAATTTTATAAAGGCCAGTACCTTGAGAAAGAAAAAG
GTGTTAAGGACGAAGAGGTAGCCGGGGCAGGAGGGTCACACTAA
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Synonyms
Publications