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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr20 | genome | chr20:808270..812892 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G02560.5 vs.
Match: EWM20490.1 (phosphatidylserine synthase [Nannochloropsis gaditana]) HSP 1 Score: 429.9 bits (1104), Expect = 9.200e-117 Identity = 198/233 (84.98%), Postives = 221/233 (94.85%), Query Frame = 0
Query: 182 MDCSISPETVRRQLTEIWFVAHALGWWGKMVMFRDWGVCWLLSVGFEVLECSLQFIIPEFKECWWDSLLIDLLGANMLGMAAGWLTLQALETHAFDWSGTQDKRSGRVRRLVLRLSPYSFTRYRWSMFSSFKRFLQVIALVMVTLLMELNAFMLLHTLQIPKASAFNKLRLSLVALLAFPAAAEYYDFIANPSRARLGPNAWCMMAVMQLEVVVWLKFWPANFVVRSPPPDIG 415
MDCS++ ++ QLTE+WFVAHALGWWGKMVMFRDWGVCW+LS+GFEVLEC+LQF+IPEFKECWWDSLLID+LGAN+LGM AGWLTLQALETHAFDWSGTQD+R GR RRL+ RLSPYSFTRYRWSMFSSFKRFLQVI L++VTLLMELNAFMLLHTLQIPK SAFNK+RLSLVALLAFPAAAEYYDFIANP ++RLGPNAWCMMAVMQLEVVVWLKFWP+ F++R+PPP+IG
Sbjct: 1 MDCSLTAASIWHQLTEVWFVAHALGWWGKMVMFRDWGVCWILSLGFEVLECTLQFLIPEFKECWWDSLLIDVLGANLLGMGAGWLTLQALETHAFDWSGTQDQRVGRARRLIQRLSPYSFTRYRWSMFSSFKRFLQVIVLLLVTLLMELNAFMLLHTLQIPKNSAFNKIRLSLVALLAFPAAAEYYDFIANPYQSRLGPNAWCMMAVMQLEVVVWLKFWPSTFLIRTPPPEIG 233
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G02560.5 ID=NO20G02560.5|Name=NO20G02560.5|organism=Nannochloropsis oceanica|type=mRNA|length=2845bp
ACAGGACGACCTTCTTCCTCGCTATCCGTGAGACATGCCACTAACCACCA
CGCAACTCTGTTGACCCTCTTTTCCCGCATCTTCGGCGAACCCTCGAAAG
CGCCTCGCCAAGACATCATCAACCTACACGTCTCCATTACACTACACATA
CACACAGCGGGCCCGAGGAGACATAGAAGACGGACAAGGTAAGTTATAAC
GTCCCAATTGTGCCCGTAGGAACCGCGGATGCTGTAGCAGCTGTGAACCT
GGCCATCGTCAGCAGACCTCCTCAAGCACCATGCCGATTACACGTGCCGC
GGCGGCTGCCGCCTCCTCTTCCTCTTCCTCCTCCTCCAGCACCAGCCTCC
GAGATGAAGCTCGGAGAAGAAAGACACCCACCTCGACCAGCGGCGGCCGC
TCCTCCTCCGTCCCGTCCGCCCTCCCTCCCGTCCTCCCCATGTCCCCCTT
AGGCCCGAACCAGTTTCGCGCTCACGCGGATTTCGTGGAAAAGCCACGAC
AGCTCTTGGTCTTGGGAGGAATGATGTTGGTAATGACGTACCTTGGCTAC
GCCCACCACTCCCCGACACCAGAGGGCAACATCCGCATGGCCTTTCTAGC
CATCGCCTTTGTGTTCCTCACCCACTGCTTCCTCCATTGTCGAGACTCGG
TTTTGATCAGACCTCACCCGGGGGTGTGGCGGCTTGTACATGGAATAGGC
ATGCTTTACTTGATGTGCCTCGGCGTCTTGTTGGTCCATGATAAGGCCGA
CGCCCGGGCCCTCGTTCGAGTCTTTGTGTCCGACATCGGGGAGGCGCCTC
AGACAAAAGCCGTGCCTGAGCCCATGGATTGTTCCATTAGCCCCGAGACA
GTCCGGCGGCAGCTCACGGAGATTTGGTTCGTGGCACATGCTCTGGGGTG
GTGGGGCAAGATGGTCATGTTCCGCGATTGGGGTGTGTGCTGGCTCCTGT
CCGTGGGCTTCGAGGTCCTGGAGTGCTCCCTGCAGTTCATCATCCCCGAG
TTCAAAGAGTGCTGGTGGGATAGCTTGCTCATCGACTTGCTCGGCGCCAA
CATGCTGGGCATGGCGGCGGGGTGGCTAACTTTGCAGGCCCTGGAGACCC
ACGCCTTCGACTGGTCGGGGACTCAAGACAAAAGGTCCGGTCGTGTCCGA
CGCCTCGTCCTTCGACTTTCGCCCTACTCCTTCACAAGATACCGGTGGTC
GATGTTCTCATCCTTCAAGCGTTTCCTGCAAGTCATCGCCCTAGTGATGG
TGACCCTCCTGATGGAGCTCAACGCCTTCATGCTCCTCCACACGCTCCAA
ATACCCAAGGCCTCGGCCTTTAACAAATTAAGACTCTCGCTCGTGGCCCT
CCTCGCCTTCCCCGCCGCCGCTGAGTACTATGATTTTATAGCCAACCCGT
CCCGCGCCAGACTCGGACCCAACGCCTGGTGCATGATGGCGGTCATGCAG
TTAGAGGTGGTGGTCTGGCTCAAATTCTGGCCCGCCAATTTCGTCGTCCG
CAGCCCGCCGCCCGACATAGGTGTGTGATACTACGCCTCCCCTCCCTCCA
TTCCTCCCTCCCTCCCTCCTCCCTCTCGTCGGGTTCTTCTCTATCCCTCC
CCCTTCCACCCTCAGCTGCGATTTCCTCTCTCCTTGTTTGACCGTTGTCC
GTCCGTCGCCCTCTCCTTCCTCTATCCCTCCCTCCCTTTCCCCTCCCTCC
CGTCAGGCTACCCCTGGATGGCGACGCTGCTACTGCTGGGTCTGTGGATG
TTCCTTTCCCTCACATTAGTTAAAGAGCAGGACCTTGGGCGGAAGTTTCA
GAGTCCAGCAGCAGGAGGGAGGGCGGGAGGGAGAGGAGGAGGGCAGCAGC
ATCAGCAGATGAAGAATGGGGAGGGTGAGGGAGCCCCTTTAAATGGAGGA
GGAGGGGAAATAGCAGGGGGTAATGGGGAGATAAGACGGGCGAGCCTGAC
GAGGAAAGAGGTGACGGTGGGTGTGGTGCAGGAGGTGGTGGACATGCTCT
TCTTCATGGCCTTCTTGCCACTCATCTGGTTGGTGCGGCAATGGGTATTT
TAATGCAAGGGAGGAGCCTCTTTTCTCCCTCCTTCTCTCACTTCCTTCCG
TCCGTCTGACGCAGATCGAAAGAAAGAAAGGAGGGGAGGTAGAGGGGAAA
AAAAAGGAGGGAGGGAAAAAAGGGTGAATTTCGACAAAGCACATTCGCGA
AGCCTTGAGAGCGAGAAAAGTAAAGTTAAATGTGTGCCTTGGTATTGTTA
TGTGGCGGTACTTCTAAAACGATTGAAAATGGGGGACAATCACTGTAGGA
CCCCTGCAAATAGAGGGAGTAAAAAAGAGGCGGTGGCGTGCGTGGCGTAG
CGATGGCACCCAACTGTAGCAACAGCAGCAGCAGCAGCAGCAGCAAATGC
AAAAATAGACAAAAAAACGAAGGAAGCTACTACAATGCAATGCAGCAGCA
AAGAAATGAGGGGAATGGAAACATGACGACCGCTTTTGGTTTTTAAAAAG
CAGGGAGGGAGGGAGGGAAGGAAGGGAGGAAAATTTGGAGAGTTGGAGGG
TGATGGATCGCTCCAACCCCCGCTATTGCTGCCGTGGCATTTGACCTGCA
ATGAATTCGATTTAAATCCCCCTTGCCTCCCTCTTGCTCTCTTTGACTAC
AGCCTGTGCTGTGTCGTGAGCCCGTTATGTGCGCATGGGCCGCTGTGGCA
CCTTTTACTTGTAAATGGGGAAGATCCATCCGGTTTGAGGGAATACTCCT
GCTCCGGGCACGTGCCCTTTCATGCAATATCATTTGTCGCAATTAAATAG
GTAGTGGATAGCGCGTCTCATCCCCTTGCTCCCTTCCTGACATGG back to topprotein sequence of NO20G02560.5 >NO20G02560.5-protein ID=NO20G02560.5-protein|Name=NO20G02560.5|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MPITRAAAAAASSSSSSSSSTSLRDEARRRKTPTSTSGGRSSSVPSALPP
VLPMSPLGPNQFRAHADFVEKPRQLLVLGGMMLVMTYLGYAHHSPTPEGN
IRMAFLAIAFVFLTHCFLHCRDSVLIRPHPGVWRLVHGIGMLYLMCLGVL
LVHDKADARALVRVFVSDIGEAPQTKAVPEPMDCSISPETVRRQLTEIWF
VAHALGWWGKMVMFRDWGVCWLLSVGFEVLECSLQFIIPEFKECWWDSLL
IDLLGANMLGMAAGWLTLQALETHAFDWSGTQDKRSGRVRRLVLRLSPYS
FTRYRWSMFSSFKRFLQVIALVMVTLLMELNAFMLLHTLQIPKASAFNKL
RLSLVALLAFPAAAEYYDFIANPSRARLGPNAWCMMAVMQLEVVVWLKFW
PANFVVRSPPPDIGV* back to topmRNA from alignment at chr20:808270..812892- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G02560.5 ID=NO20G02560.5|Name=NO20G02560.5|organism=Nannochloropsis oceanica|type=mRNA|length=4623bp|location=Sequence derived from alignment at chr20:808270..812892- (Nannochloropsis oceanica)
ACAGGACGACCTTCTTCCTCGCTATCCGTGAGACATGCCACTAACCACCA
CGCAACTCTGTTGACCCTCTTTTCCCGCATCTTCGGCGAACCCTCGAAAG
CGCCTCGCCAAGACATCATCAACCTACACGTCTCCATTACACTACACATA
CACACAGCGGGCCCGAGGAGACATAGAAGACGGACAAGGTAAGTTATAAC
GTCCCAATTGTGCCCGTAGGAACCGCGGATGCTGTAGCAGCTGTGAACCT
GGCCATCGTCAGCAGGTAAGAAGACCCCCCCGTCCCCGACGTAAAGGAGC
AGCAGCATCAGCAACCGACACCACCAGCCATATCTTCGCCCTAGCTTTCC
GTGCAAAGTCTACTACTTTCGGATGCAATTTTGTGTTATTGTGTCGTCCT
GCCGTTCACAATTATCTTATCCCATTAACCCTCCCTTTCCCTCTCCCATC
CTCCCTTTCCTTCTGCCGTCTTTGTCATCTCCAGACCTCCTCAAGCACCA
TGCCGATTACACGTGCCGCGGCGGCTGCCGCCTCCTCTTCCTCTTCCTCC
TCCTCCAGCACCAGCCTCCGAGATGAAGCTCGGAGAAGAAAGACACCCAC
CTCGACCAGCGGCGGCCGCTCCTCCTCCGTCCCGTCCGCCCTCCCTCCCG
TCCTCCCCATGTCCCCCTTAGGCCCGAACCAGTTTCGCGCTCACGCGGAT
TTCGTGGAAAAGCCACGACAGCTCTTGGTCTTGGGAGGTAAGTGAATGGG
GAACGGAAGTTGATATGGATGGAGGGAAGGAAATGGAGGACTGACCGTAA
AGGGGGGGATGGTCCAAGATGAATGTGTGGGGGAATATGGCTGAGTGACG
CAAGTAGTCCTGACCACGACCCTCCCTCGTTCCCTCCCTCCCTCCCTCGC
TTCATCCCTTTCTCTGTACCTCCCCAGGAATGATGTTGGTAATGACGTAC
CTTGGCTACGCCCACCACTCCCCGACACCAGAGTACGTAGGAAGGGAAGG
GGGGAAGGGAATTGGCGAGGGAGAGGGGGAGGATGGCTAAGTTAGATTGG
GGTGAATTTGTGTAGATTTTCGTCAGATTGTCGATCTCGTCGACCAATCT
GATTCACACCAATGCTATCCCTCTCCCCTTCTTCCCTTCCCTCCCTCCGA
ATGCCAGGGGCAACATCCGCATGGCCTTTCTAGCCATCGCCTTTGTGTTC
CTCACCCACTGCTTCCTCCATTGTCGAGACTCGGTTTTGATCAGACCTCA
CCCGGGGGTGTGGCGGCTTGTACATGGAATAGGCATGCTTTACTTGATGT
GCCTCGGCGTCTTGTTGGGTGAGGAGGAGGGAGGAAATGGAGGGAGGGGG
AGAAAAAGCGATGCAGTCAGACATGAAAAAAATCTCAGATCCACACTCAT
CTCCTTCCCCCCCTCCCCCTTTTCCAACCTTCCTAGTCCATGATAAGGCC
GACGCCCGGGCCCTCGTTCGAGTCTTTGTGTCCGACATCGGGGAGGCGCC
TCAGACAAAAGCCGTGCCTGAGCCCATGGATTGTTCCATTAGCCCCGAGA
CAGTCCGGCGGCAGCTCACGGAGATTTGGTAAGCTCTCCTGTCTTCCCCT
TCCTCTCCTTCCAGTGATACTCATGCCAGGGTCGAGTCCTTACCCTGTTG
TCTATTCTCGGTGTTGCTCGCGGGGCTGGTAGCATCGTCCACCTTCGGCG
CCTTACGCCTTGCGACCAGGCCCCTAGTTGATTGCCCCTCCCTTTCTCTT
TCTGCTCCTTTTATTTCATCTTCGCGCCGACCTTCCCGGTATTCTCAACC
TTTCCTCGTATTTCCTAATCCCTTGCAAGGTTCGTGGCACATGCTCTGGG
GTGGTGGGGCAAGATGGTCATGTTCCGCGATTGGGGTGTGTGCTGGCTCC
TGTCCGTGGGCTTCGAGGTCCTGGAGTGCTCCCTGCAGTTCATCATCCCC
GAGTTCAAAGAGTGCTGGTGGGATAGCTTGCTCATCGACTTGCTCGGCGC
CAACATGCTGGGCATGGCGGCGGGGTGGCTAACTTTGCAGGTGCGTGCGA
AGAACAAGGAGGAAACTGAAATAGACATACTAATACTGCAAAAAGAGGAT
CTGTATAAATATCTGTGTGCACACATGCGTGCATCTGCGTACCTACATAG
ATCTACGTATGCATTTAATTATCTTGGTGCTTTGTGTCTTGGGTACCGGG
ATCGCCTCTCAATGCGTGCGTAGTCCCACGTACATGAAATGTACACCTAC
AGTAAGCGCTGTATAAATGTCCCAAGGGCCTCTCCCGTTAGGTTAGTGGC
CTTGCATAAAAGTAGCTCCTCCATGGGCTTGATTGGTTTACAAGTCCCAG
GCACATGACTCACCTAGACACCAACAAACCCGTAGGCCCTGGAGACCCAC
GCCTTCGACTGGTCGGGGACTCAAGACAAAAGGTCCGGTCGTGTCCGACG
CCTCGTCCTTCGACTTTCGCCCTACTCCTTCACAAGGTACGCTCTCAATT
AAGAAGAAAGCTCGCCGGTCTTCTTCCCTGACACGTATGGATTGTCTCTC
CCCCTCTTCTCTGGCTGCAGATACCGGTGGTCGATGTTCTCATCCTTCAA
GCGTTTCCTGCAAGTCATCGCCCTAGTGATGGTGACCCTCCTGATGGAGC
TCAACGCCTTCATGCTCCTCCACACGCTCCAAATACCCAAGGCCTCGGCC
TTTAACAAATTAAGACTCTCGCTCGGTACGTTCTTCTTGCCTCTCTTTTC
TCCCTCCCTGACTCTGTCCTCCCTCAACAATTGCCACCCACCTCATCGCT
TTCCTTTCCTTTTCTTCTTGTGCCCCCTCCCTCCCCCAGTGGCCCTCCTC
GCCTTCCCCGCCGCCGCTGAGTACTATGATTTTATAGCCAACCCGTCCCG
CGCCAGACTCGGACCCAACGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAAGGAGGGAGGGAGGAACGGTGGTCATATATAGTTTTACCGTTTAA
ACTTACCATTTAAACTTACCATTCCCTCCCTCCCTCCCTCCTCCCTCCCC
TCCTCCAGCCTGGTGCATGATGGCGGTCATGCAGTTAGAGGTGGTGGTCT
GGCTCAAATTCTGGCCCGCCAATTTCGTCGTCCGCAGCCCGCCGCCCGAC
ATAGGTGTGTGATACTACGCCTCCCCTCCCTCCATTCCTCCCTCCCTCCC
TCCTCCCTCTCGTCGGGTTCTTCTCTATCCCTCCCCCTTCCACCCTCAGC
TGCGATTTCCTCTCTCCTTGTTTGACCGTTGTCCGTCCGTCGCCCTCTCC
TTCCTCTATCCCTCCCTCCCTTTCCCCTCCCTCCCGTCAGGCTACCCCTG
GATGGCGACGCTGCTACTGCTGGGTCTGTGGATGTTCCTTTCCCTCACAT
TAGTTAAAGAGCAGGACCTTGGGCGGAAGTTTCAGAGTCCAGCAGCAGGA
GGGAGGGCGGGAGGGAGAGGAGGAGGGCAGCAGCATCAGCAGATGAAGAA
TGGGGAGGGTGAGGGAGCCCCTTTAAATGGAGGAGGAGGGGAAATAGCAG
GGGGTAATGGGGAGATAAGACGGGCGAGCCTGACGAGGAAAGAGGTGAGT
CATGAGGGAGGGAGGGAGGGAGGGAGGGCGGTGCAATCAAAGTTTACTTA
TTGGCTGCCACATTCAGGCGTTTCACTTACTCAGCCCTTCGTTACTCGTC
CCCTGTGCCCCTTTCTCACGCCCTTCACTCCTTCTTAGGTGACGGTGGGT
GTGGTGCAGGAGGTGGTGGACATGCTCTTCTTCATGGCCTTCTTGCCACT
CATCTGGTTGGTGCGGCAATGGGTATTTTAATGCAAGGGAGGAGCCTCTT
TTCTCCCTCCTTCTCTCACTTCCTTCCGTCCGTCTGACGCAGATCGAAAG
AAAGAAAGGAGGGGAGGTAGAGGGGAAAAAAAAGGAGGGAGGGAAAAAAG
GGTGAATTTCGACAAAGCACATTCGCGAAGCCTTGAGAGCGAGAAAAGTA
AAGTTAAATGTGTGCCTTGGTATTGTTATGTGGCGGTACTTCTAAAACGA
TTGAAAATGGGGGACAATCACTGTAGGACCCCTGCAAATAGAGGGAGTAA
AAAAGAGGCGGTGGCGTGCGTGGCGTAGCGATGGCACCCAACTGTAGCAA
CAGCAGCAGCAGCAGCAGCAGCAAATGCAAAAATAGACAAAAAAACGAAG
GAAGCTACTACAATGCAATGCAGCAGCAAAGAAATGAGGGGAATGGAAAC
ATGACGACCGCTTTTGGTTTTTAAAAAGCAGGGAGGGAGGGAGGGAAGGA
AGGGAGGAAAATTTGGAGAGTTGGAGGGTGATGGATCGCTCCAACCCCCG
CTATTGCTGCCGTGGCATTTGACCTGCAATGAATTCGATTTAAATCCCCC
TTGCCTCCCTCTTGCTCTCTTTGACTACAGCCTGTGCTGTGTCGTGAGCC
CGTTATGTGCGCATGGGCCGCTGTGGCACCTTTTACTTGTAAATGGGGAA
GATCCATCCGGTTTGAGGGAATACTCCTGCTCCGGGCACGTGCCCTTTCA
TGCAATATCATTTGTCGCAATTAAATAGGTAGTGGATAGCGCGTCTCATC
CCCTTGCTCCCTTCCTGACATGG back to topCoding sequence (CDS) from alignment at chr20:808270..812892- >NO20G02560.5 ID=NO20G02560.5|Name=NO20G02560.5|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at chr20:808270..812892- (Nannochloropsis oceanica)
ATGCCGATTACACGTGCCGCGGCGGCTGCCGCCTCCTCTTCCTCTTCCTC
CTCCTCCAGCACCAGCCTCCGAGATGAAGCTCGGAGAAGAAAGACACCCA
CCTCGACCAGCGGCGGCCGCTCCTCCTCCGTCCCGTCCGCCCTCCCTCCC
GTCCTCCCCATGTCCCCCTTAGGCCCGAACCAGTTTCGCGCTCACGCGGA
TTTCGTGGAAAAGCCACGACAGCTCTTGGTCTTGGGAGGAATGATGTTGG
TAATGACGTACCTTGGCTACGCCCACCACTCCCCGACACCAGAGGGCAAC
ATCCGCATGGCCTTTCTAGCCATCGCCTTTGTGTTCCTCACCCACTGCTT
CCTCCATTGTCGAGACTCGGTTTTGATCAGACCTCACCCGGGGGTGTGGC
GGCTTGTACATGGAATAGGCATGCTTTACTTGATGTGCCTCGGCGTCTTG
TTGGTCCATGATAAGGCCGACGCCCGGGCCCTCGTTCGAGTCTTTGTGTC
CGACATCGGGGAGGCGCCTCAGACAAAAGCCGTGCCTGAGCCCATGGATT
GTTCCATTAGCCCCGAGACAGTCCGGCGGCAGCTCACGGAGATTTGGTTC
GTGGCACATGCTCTGGGGTGGTGGGGCAAGATGGTCATGTTCCGCGATTG
GGGTGTGTGCTGGCTCCTGTCCGTGGGCTTCGAGGTCCTGGAGTGCTCCC
TGCAGTTCATCATCCCCGAGTTCAAAGAGTGCTGGTGGGATAGCTTGCTC
ATCGACTTGCTCGGCGCCAACATGCTGGGCATGGCGGCGGGGTGGCTAAC
TTTGCAGGCCCTGGAGACCCACGCCTTCGACTGGTCGGGGACTCAAGACA
AAAGGTCCGGTCGTGTCCGACGCCTCGTCCTTCGACTTTCGCCCTACTCC
TTCACAAGATACCGGTGGTCGATGTTCTCATCCTTCAAGCGTTTCCTGCA
AGTCATCGCCCTAGTGATGGTGACCCTCCTGATGGAGCTCAACGCCTTCA
TGCTCCTCCACACGCTCCAAATACCCAAGGCCTCGGCCTTTAACAAATTA
AGACTCTCGCTCGTGGCCCTCCTCGCCTTCCCCGCCGCCGCTGAGTACTA
TGATTTTATAGCCAACCCGTCCCGCGCCAGACTCGGACCCAACGCCTGGT
GCATGATGGCGGTCATGCAGTTAGAGGTGGTGGTCTGGCTCAAATTCTGG
CCCGCCAATTTCGTCGTCCGCAGCCCGCCGCCCGACATAGGTGTGTGA back to top
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