NO20G02550.2, NO20G02550.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02550.2
Unique NameNO20G02550.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1652
Alignment locationchr20:804625..808269 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:804625..808269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02550.2 vs.
Match: EWM28507.1 (hypothetical protein Naga_100058g18 [Nannochloropsis gaditana])

HSP 1 Score: 249.2 bits (635), Expect = 1.500e-62
Identity = 132/293 (45.05%), Postives = 189/293 (64.51%), Query Frame = 0 
Query:    1 MLHKDERLLAPTAFQCYVPRIFLGREKFMEGKFSALKMERPMDSMKVGLASPFEDEFAVANLSGVSPYMGAIFPRQYHY---YERYLALKDVTQEELSAWKKSITFFFKKILFRRQDKRLILKSPSHTARVRLLRDLFPGAKFIHISRDPYEIYQSTHKLHTNLLIQWCLQ--------RPPLENKDWKKGNIISHFRRMYDAYFEDVKL--LGKDELVDIKYTDLLSDPVATIKTIYDRFNLGRFEEKMLPFLREYQQEQEGFVVNTHLALSEEERAMVAHAWSDYFEFYGY 281
            ++ KD+R +APT +QC+ PR+FL RE+ +  +F  L+M RPMDS+KV + SP EDEF + NL G+SPYMGAIF R       Y +YL+ K+ + EE++ WK ++ FF+KK+LF++QDKRLILKSP+HTAR++LL +LFP AKFIHISR+P+E+YQST KL  +LLIQW LQ        +   E+ +  + +I+  +  +YD++F+D+    LGKD L  +KY DL+  PV  ++ IY    LG FE      L    ++ E F  N H  +S   +  V    + YF  +GY
Sbjct:  238 LMSKDDRFVAPTVYQCFAPRVFLHREEAISEQFGKLQMRRPMDSVKVRMESPQEDEFGLVNLCGLSPYMGAIFARAERIKNTYFQYLSFKEASTEEVARWKDAVVFFYKKVLFKKQDKRLILKSPAHTARLKLLHELFPDAKFIHISRNPFEVYQSTSKLFMDLLIQWNLQYVDYLGDIQSHPEDTELHR-SILQLYGGIYDSFFQDLDELGLGKDVLTYVKYEDLMRSPVGVVEKIYKDLRLGNFENVQQLLLEATAKDGE-FRRNAHPNISANVKNDVRTRLARYFTEFGY 528
The following BLAST results are available for this feature:
BLAST of NO20G02550.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28507.11.500e-6245.05hypothetical protein Naga_100058g18 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02550NO20G02550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02550.2NO20G02550.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02550.2.cds1NO20G02550.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02550.2.cds2NO20G02550.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02550.2.cds3NO20G02550.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02550.2.cds4NO20G02550.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02550.2.cds5NO20G02550.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02550.2.cds6NO20G02550.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02550.2.cds7NO20G02550.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02550.2.cds8NO20G02550.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02550.2.cds9NO20G02550.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02550.2 ID=NO20G02550.2|Name=NO20G02550.2|organism=Nannochloropsis oceanica|type=mRNA|length=1652bp
CACAGCATCCTCCTCTTTCTCCCTCTCCCCTCCTGAAACGCAGCACCGCT
CTCGTTGTAGCTCACACAGGCCATACGTCGTAGCCACCTCCTCCCTCCCC
GCCTCTCCTCGCTCCTCTCAATAATCCAGCCTGCCTCGACACGAGCCACA
CACACCACCGCCACCGGACAACAAACACATACACACCATCCAGAATTATG
CCCTCCCTGTTTGTCACCCTCGTCGTTGTCCTCGTTGTCCTTCCCGCCTT
TCTCCTCCTCCTCTTGGTTAAGCTGCCCAAGCCCATGCCGTATCGATGGG
ATGTCCGCTACTTTCTTCTCATGGGCATGCCGGCCGATCAGTTCTTGTCC
TTGATCCTCAAGAACGGAATAGATCCAGTTTTCTACCATCGAGCGCTATA
TGCCACATACATCTCGCTCATGGGCACCTTCTTTTGGATCCCCAAGGAGG
AGGAGAAGTATCCCGTGGAGGTGATCGAAAGGGTAGGGTCGGAGGGAAGG
AGGGAGGGAGGAAGGGGGGGAGAAAGCGGCGGTTCGTGTCATACTGCCCT
GACGGTGTCTTTTTGATGATGCCAGCACACGGCATGTACGCTTGGCGTGG
CTGGTTGCGACTTTTCTTTGAGAGAAACTCTTTTACCTACGCTGTCCATC
GCTCCATCGATCTGATTTCATATTCACAGCCTCTCCCTCCCTCCCTTCGT
CCTCCCTCCCTTCCGTCCTCCCTCCCTCAGGTGCCCATTGCCTATCCCCC
ATCTTCATCCTCGGCCACTACCGCAGTGGGACGTCTCTACTGCACGAGAT
GTTGCACAAGGACGAGCGCCTCCTGGCACCCACGGCTTTCCAGTGCTACG
TGCCGCGGATCTTCCTGGGCAGGGAGAAATTCATGGAAGGCAAGTTCTCG
GCCCTGAAGATGGAACGTCCCATGGACAGTATGAAGGTCGGCCTGGCCAG
CCCCTTCGAGGACGAATTTGCCGTTGCCAATCTCTCGGGTGTCTCTCCCT
ATATGGGCGCCATATTCCCCCGGCAATATCACTACTACGAGCGCTACCTC
GCCCTGAAGGACGTCACGCAGGAAGAGCTGTCAGCGTGGAAGAAGTCTAT
CACATTCTTCTTCAAAAAAATTCTCTTCAGACGCCAAGACAAGCGGCTTA
TCCTCAAGTCCCCCTCCCACACGGCCCGCGTTCGCCTCCTCCGCGACCTC
TTTCCCGGCGCCAAATTCATCCACATCAGCCGGGACCCATACGAGATCTA
TCAGTCCACGCACAAACTACACACTAACCTCCTCATCCAGTGGTGCCTCC
AGCGACCACCCCTGGAGAACAAGGACTGGAAGAAGGGGAACATCATTTCC
CACTTTCGACGGATGTATGATGCCTACTTTGAGGACGTGAAGCTCCTGGG
CAAGGACGAGCTTGTTGATATAAAGTACACAGATTTGCTCTCCGATCCGG
TGGCCACCATCAAGACCATCTACGACCGATTCAATCTCGGGCGCTTCGAA
GAGAAGATGCTGCCTTTTTTGCGCGAATACCAGCAGGAGCAGGAGGGCTT
TGTGGTCAACACGCACCTGGCTCTGAGCGAGGAGGAGAGGGCGATGGTGG
CCCATGCCTGGAGCGACTACTTCGAGTTTTATGGCTATCGGAAGTAAGGG
GA
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protein sequence of NO20G02550.2

>NO20G02550.2-protein ID=NO20G02550.2-protein|Name=NO20G02550.2|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MLHKDERLLAPTAFQCYVPRIFLGREKFMEGKFSALKMERPMDSMKVGLA
SPFEDEFAVANLSGVSPYMGAIFPRQYHYYERYLALKDVTQEELSAWKKS
ITFFFKKILFRRQDKRLILKSPSHTARVRLLRDLFPGAKFIHISRDPYEI
YQSTHKLHTNLLIQWCLQRPPLENKDWKKGNIISHFRRMYDAYFEDVKLL
GKDELVDIKYTDLLSDPVATIKTIYDRFNLGRFEEKMLPFLREYQQEQEG
FVVNTHLALSEEERAMVAHAWSDYFEFYGYRK*
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mRNA from alignment at chr20:804625..808269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02550.2 ID=NO20G02550.2|Name=NO20G02550.2|organism=Nannochloropsis oceanica|type=mRNA|length=3645bp|location=Sequence derived from alignment at chr20:804625..808269- (Nannochloropsis oceanica)
CACAGCATCCTCCTCTTTCTCCCTCTCCCCTCCTGAAACGCAGCACCGCT
CTCGTTGTAGCTCACACAGGCCATACGTCGTAGCCACCTCCTCCCTCCCC
GCCTCTCCTCGCTCCTCTCAATAATCCAGCCTGCCTCGACACGAGCCACA
CACACCACCGCCACCGGACAACAAACACATACACACCATCCAGAATTATG
CCCTCCCTGTTTGTCACCCTCGTCGTTGTCCTCGTTGTCCTTCCCGCCTT
TCTCCTCCTCCTCTTGGTTAAGCTGCCCAAGCCCATGCCGTATCGATGGG
ATGTCCGCTACTTTCTTCTCATGGGCATGCCGGCCGATCAGTTCTTGTCC
TTGATCCTCAAGGTAAGGCAGCACAGGGGAGAAGGGATGAGACCAGACCG
ATTTCGCAAAGAGAGGTGCGAGGGTAATGTGCCGGCAATTGACCCTAGTC
GTCTGCTCCATCCCCCTCGTGGGCATGCTCGACGGCCAGTATTCGTGCTT
GTTCATCCTTAAGGAGCGTGCATATAAACGAGGCGTTGAATAAGCAATGG
GCAAGACCGGGCTCTTGGACTGCCTGCGAGCGATTGGTTTCACATGTCGT
ACTCTCACCGTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCGTAGAACGGAATAGATCCAGTTTTCTACCAT
CGAGCGCTATATGCCACATACATCTCGCTCATGGGCACCTTCTTTTGGAT
CCCCAAGGAGGAGGAGAAGTATCCCGTGGAGGTGATCGAAAGGGTAGGGT
CGGAGGGAAGGAGGGAGGGAGGAAGGGGGGGAGAAAGCGGCGGTTCGTGT
CATACTGCCCTGACGGTGTCTTTTTGATGATGCCAGCACACGGCATGTAC
GCTTGGCGTGGCTGGTTGCGACTTTTCTTTGAGAGAAACTCTTTTACCTA
CGCTGTCCATCGCTCCATCGATCTGATTTCATATTCACAGCCTCTCCCTC
CCTCCCTTCGTCCTCCCTCCCTTCCGTCCTCCCTCCCTCAGGTGCCCATT
GCCTATCCCCCATCTTCATCCTCGGCCACTACCGCAGTGGGACGTCTCTA
CTGCACGAGATGTTGCACAAGGACGAGCGCCTCCTGGCACCCACGGCTTT
CCAGTGCTACGTGCCGCGGATCTTCCTGGGCAGGGAGGTGAGGGAGGAAG
GGAGGAAGGGAGGAAGGGAGGAAGGGAGGAAGGGAGGGAAGGAGGGAGGA
GGACTAATGTATAACCTTCTTGGTTTCTTATTATTCCGTATCCCGTTTTC
TCTGAATTGAGATGGTTTCTCTGAAAGGCACCTCCCACTCATACCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCAGAAATTCATGG
AAGGCAAGTTCTCGGCCCTGAAGATGGAACGTCCCATGGACAGTATGAAG
GTAGGTAGGCAGGGCGGGAGGTAGGAACGGAGGGAGCGACGGGGCGATCC
AATAAGCTGAGTGCTTGAGTTTTTGTGCGGGATCCATCCTCCCCTCCCTC
CTCTCCTCCCTCCTTCCCCCCCCCCTCCTTTACCTGACTCCACACTCCCT
CTGGAAGTGGGCTTGCCACCACCTCTCTCACCCTCCCTCCCTCCCTCCCT
CCCCCCTCCCCCCCACTCCAGGTCGGCCTGGCCAGCCCCTTCGAGGACGA
ATTTGCCGTTGCCAATCTCTCGGGTGTCTCTCCCTATATGGGCGCCATAT
TCCCCCGGCAATATCACTACTACGAGCGCTACCTCGCCCTGAAGGACGTC
ACGCAGGTAGGTCCTGTTTTGTCCTCCCCTCCCACCTCCCCCACCCTCCC
TCCTTCCCTCCCTCCCTCCCTCGTCCTCCTTCCAAGGTCGAGGGGGAGAG
TCTCCTTCTCCTCTCTCTTATTCGCCCTCCCTCCCTCCCTCCCTCCCTTC
CTCCCTCCCTTGCAGGAAGAGCTGTCAGCGTGGAAGAAGTCTATCACATT
CTTCTTCAAAAAAATTCTCTTCAGACGCCAAGACAAGCGGCTTATCCTCA
AGGTATCTCCCTCCCTCCCTCCTTTCCTCTCTCCCTCCCTCCCTTTCTCC
CTCCCGGCCTGCCTCCTTACCTATCTTCGCAGCCCTCGATGGGATCGGTG
GAATACATCATTACACTATACCTATACATAAGTGAATATGGATGTAGGTA
TAACCTACCTATCTACATCTATAATGGATGTAATCAGATTCCCAACCTCC
GCCAGTGCCCACGACCTACGCATCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGTCCCCCTCCCACACGGCCC
GCGTTCGCCTCCTCCGCGACCTCTTTCCCGGCGCCAAATTCATCCACATC
AGGTACACCAGATCACTCCCTGCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCTTCCAATTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTCTCCCTCCCTCCTCCCCTCCCTTCTCTCCCTTGCTCTCTGTCTTCCAT
TCTCTCTGCTTGTCTGACGAAGGCCGTTTGCTGCATTTCTCAAACGCCTC
CCCTCCTCAACCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCG
CTCTTCCTAGCCGGGACCCATACGAGATCTATCAGTCCACGCACAAACTA
CACACTAACCTCCTCATCCAGTGGTGCCTCCAGCGACCACCCCTGGAGGT
ACGTCCTCCCTCCCTCCCTCCCTCCCTTCCTCCTTCCCTCGTGGACCGTG
TCGACACACGCCTTGGCAAATCGTCTAACCTCCTTTCTTCCCTTCCTTCC
TCCCTCCCTGCCCCCCTCTTTAGAACAAGGACTGGAAGAAGGGGAACATC
ATTTCCCACTTTCGACGGATGTATGATGCCTACTTTGAGGTGGGGCCCTC
CCTCCCTTCCTCCTTCCCTCCCTCCCTCGCTCCCTCCCTCGCTCCCTCCT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTGTTACTCCCTTCTAATTC
CACTTCCTTCCTTTTTAATGTGCCCGACGCGCTCACCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCAGGACGTGAAGCTCCTGGGCAAGGACG
AGCTTGTTGATATAAAGTACACAGATTTGCTCTCCGATCCGGTGGCCACC
ATCAAGACCATCTACGACCGATTCAATCTCGGGCGGTACGCACCTTCCCT
CCCTCCCTCCCTCCCTCCCTCGTTATTCCCCTTCTTGGACGATATCTCCC
TACTCCCTCTTTTTCGCCATTTGCTTTCCTCTGTCCCTCCCTCCCTCTCT
CTCTCTTCCTCTCCATCTCATTATCCTCTTAACATGTCCTAACCGAGTCC
GTGGTCATCATGAATGGTTGCCTCATTCCCCTGATCTCCTCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCCTCCCCCCCCCGGCAGCTTCGAAGAGAAGA
TGCTGCCTTTTTTGCGCGAATACCAGCAGGAGCAGGAGGGCTTTGTGGTC
AACACGCACCTGGCTCTGAGCGAGGAGGAGAGGGCGATGGTGGCCCATGC
CTGGAGCGACTACTTCGAGTTTTATGGCTATCGGAAGTAAGGGGA
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Coding sequence (CDS) from alignment at chr20:804625..808269-

>NO20G02550.2 ID=NO20G02550.2|Name=NO20G02550.2|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr20:804625..808269- (Nannochloropsis oceanica)
ATGTTGCACAAGGACGAGCGCCTCCTGGCACCCACGGCTTTCCAGTGCTA
CGTGCCGCGGATCTTCCTGGGCAGGGAGAAATTCATGGAAGGCAAGTTCT
CGGCCCTGAAGATGGAACGTCCCATGGACAGTATGAAGGTCGGCCTGGCC
AGCCCCTTCGAGGACGAATTTGCCGTTGCCAATCTCTCGGGTGTCTCTCC
CTATATGGGCGCCATATTCCCCCGGCAATATCACTACTACGAGCGCTACC
TCGCCCTGAAGGACGTCACGCAGGAAGAGCTGTCAGCGTGGAAGAAGTCT
ATCACATTCTTCTTCAAAAAAATTCTCTTCAGACGCCAAGACAAGCGGCT
TATCCTCAAGTCCCCCTCCCACACGGCCCGCGTTCGCCTCCTCCGCGACC
TCTTTCCCGGCGCCAAATTCATCCACATCAGCCGGGACCCATACGAGATC
TATCAGTCCACGCACAAACTACACACTAACCTCCTCATCCAGTGGTGCCT
CCAGCGACCACCCCTGGAGAACAAGGACTGGAAGAAGGGGAACATCATTT
CCCACTTTCGACGGATGTATGATGCCTACTTTGAGGACGTGAAGCTCCTG
GGCAAGGACGAGCTTGTTGATATAAAGTACACAGATTTGCTCTCCGATCC
GGTGGCCACCATCAAGACCATCTACGACCGATTCAATCTCGGGCGCTTCG
AAGAGAAGATGCTGCCTTTTTTGCGCGAATACCAGCAGGAGCAGGAGGGC
TTTGTGGTCAACACGCACCTGGCTCTGAGCGAGGAGGAGAGGGCGATGGT
GGCCCATGCCTGGAGCGACTACTTCGAGTTTTATGGCTATCGGAAGTAA
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Synonyms
Publications