NO20G02530.1, NO20G02530.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO20G02530.1
Unique Name	NO20G02530.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1896
Alignment location	chr20:796848..800557 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr20	genome	chr20:796848..800557 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO20G02530.1 vs.
Match: EWM30451.1 (phosphate phosphoenolpyruvate translocator precursor [Nannochloropsis gaditana])

HSP 1 Score: 300.1 bits (767), Expect = 1.100e-77
Identity = 177/374 (47.33%), Postives = 229/374 (61.23%), Query Frame = 0

Query:   25 ARPPSSSFLHALSNKRASTPASLPSCSLDFLLQTRGGTAANAATTALPTSALVERKGGAAVALEGGKT-LWEKSKVWVFIGLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGALYTMFLWLVRARKMPTIAAPEMKTLSILGVLHAVSHITAITSLGAGAVSFTHIVKSAEPFFSAVFAGLFFGQFFSLPVYAALIPVVSGVAYASLKELTFTWLSFWCAMASNVVCAARGVVVKGMMGGKPTQSKDLTSSNMYSVLTILAALVLLPFGALVEGPGLHAAWKAAAAHPSLTNGGTELAKYLVYSGLTFFLYNEVAFAALESLHPISHAVANTIKRVVIIVVSVLVFRNPMSTQSIIGSSTAVIGVLLYSLA 398
            A PPS            S   SLP      L            T  +    LV R+GG      G    + +  KV  F  LWY FN+ +NIYNKK LN LPLPW V + QL LG LY   LWL   RK P ++   +K +  +  +HA++HITA+ SLGAGAVSFTHI+K+AEP F+++F+ LF  Q+FS  VYA+LIPV+ GVA ASL E  F+WL+F  AM +N   A RG+  K  M  +  Q +++  +N+Y+VLTILA L++ P   LVEG  L  AW+AA A         +L  Y+V SGL F+LYNEVAF AL+S+HP++HAV NTIKRVVII  S+LVF+NP++ Q  IGS+ A+ GVLLYSLA
Sbjct:   39 AEPPSGP---------TSRSFSLPQSRTAALTSVEPSVYNLQPTPVVAPKLLVSRRGGEVATATGSDAGVKQTLKVGSFFFLWYLFNIGYNIYNKKALNVLPLPWMVGLVQLSLGLLYVFPLWLFGIRKAPKLSLQNVKNILPVAAMHAMAHITAVISLGAGAVSFTHIIKAAEPAFTSLFSALFLKQYFSPVVYASLIPVMGGVAIASLTERKFSWLAFNSAMLANTASAGRGIFAKKTM--REPQGQNMDPANLYAVLTILATLIMAPVAFLVEGSKLKPAWEAALA----VTSQRQLINYIVSSGLYFYLYNEVAFLALDSVHPVTHAVGNTIKRVVIIGASILVFKNPVTLQGYIGSAVAIAGVLLYSLA 397

The following BLAST results are available for this feature:

BLAST of NO20G02530.1 vs.

BLAST of NO20G02530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30451.1	1.100e-77	47.33	phosphate phosphoenolpyruvate translocator precurs...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO20G02530	NO20G02530	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO20G02530.1	NO20G02530.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO20G02530.1.cds1	NO20G02530.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02530.1.cds2	NO20G02530.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02530.1.cds3	NO20G02530.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02530.1.cds4	NO20G02530.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02530.1.cds5	NO20G02530.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02530.1.cds6	NO20G02530.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02530.1.cds7	NO20G02530.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02530.1.cds8	NO20G02530.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G02530.1.cds9	NO20G02530.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr20:796848..800557-
coding sequence from alignment at chr20:796848..800557-

mRNA sequence

>NO20G02530.1 ID=NO20G02530.1|Name=NO20G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp
TGGTGGGGCAGAACCAAGGGGCGGGAGGTCGAGCATGCGTCGCTCGCTGT
GCGGTGGTGGGGTGGGCGTGCGTTTGTTGCTTCATGATGGCCATTTGGCA
CACGGCGCAGCCACTTTCCGGGACATTTGAAAGAATATCCCACATTGCTT
GAGGTATTTCATTCAGCTTTATCCTCCTTTCCTTCCCATCTTAAAAAAAA
ATACGCGACACAGAGCCAACGGGATCGGACAAAGGACACTTCCCACCATA
ACCACATCAAGAAGTAGGCCAGTCAACGAAAATGGCGCGTCTTCCCTTCT
ACCTTCTAGTGATCTCCACTCTCCTTCTTGTCGTCACCGCCGACTCCTTC
TTGGCCCGTCCCCCCTCTTCCTCATTCCTGCATGCTCTCAGCAATAAGCG
CGCCTCTACCCCGGCTTCCCTCCCTTCATGCTCCCTCGACTTTCTCCTCC
AAACCCGTGGCGGCACCGCAGCGAATGCAGCCACTACTGCTCTTCCTACC
TCTGCCCTGGTAGAGAGGAAGGGCGGCGCAGCAGTCGCGCTGGAGGGGGG
GAAGACTCTGTGGGAAAAGTCCAAGGTGTGGGTGTTTATTGGCCTGTGGT
ACTTCTTCAACGTGGCGTTCAACATCTACAACAAGAAGGTACTCAACGCG
CTGCCCCTGCCCTGGACTGTCTCTATTGCCCAACTCGGCCTTGGCGCCCT
CTACACCATGTTTCTCTGGCTCGTTCGCGCACGCAAAATGCCTACAATCG
CTGCCCCTGAGATGAAGACCCTCTCTATTCTCGGTGTCCTGCATGCCGTG
TCTCACATCACAGCCATCACTTCCCTTGGTGCCGGCGCGGTCAGCTTCAC
CCACATCGTCAAATCCGCAGAACCATTCTTCTCCGCCGTCTTCGCCGGCC
TTTTCTTCGGACAATTCTTCTCCCTGCCCGTTTACGCGGCTTTAATACCC
GTCGTCTCGGGTGTGGCTTACGCCTCTCTCAAGGAGCTAACCTTCACGTG
GCTGTCCTTCTGGTGCGCTATGGCCTCTAACGTGGTGTGTGCGGCCCGTG
GGGTCGTCGTCAAGGGCATGATGGGCGGGAAGCCCACCCAAAGCAAGGAC
CTGACGAGCAGCAACATGTATAGCGTGCTGACCATCCTCGCCGCCCTCGT
CCTCCTCCCCTTTGGAGCCCTCGTGGAGGGACCGGGCTTGCATGCCGCCT
GGAAGGCGGCGGCCGCCCACCCCTCCCTGACGAATGGAGGCACCGAGCTG
GCCAAATATCTAGTGTATTCAGGCTTGACTTTCTTTCTGTATAATGAGGT
GGCCTTCGCGGCGCTGGAGTCGCTTCACCCGATATCCCACGCCGTTGCCA
ACACCATCAAGCGTGTCGTCATCATTGTCGTCTCTGTCCTCGTCTTCCGA
AATCCGATGTCCACCCAATCCATCATTGGCTCTTCCACGGCCGTCATCGG
CGTCCTCCTCTACTCCCTCGCCAAGCATTATTGCAAATAAGCCCTCGTTT
TTTTCCTTCCTCCCTCCCTTTTTTTCTCTTTCACTCGGCTCCTGGTCCTT
CCTCCCCTTCCCCTTCTCCTTCCTTCCTCCCTTTTCTCTCCTGTGTTCTC
CTGTCGTTGAGCTTGCGAGAAAGGAGAGGAGAAGGGAGGGAGAAAGGGAG
GAAGGGAAAGAGGGACCTGTTCTGTTCTATTATATACGAAATACGCCCTG
CGCAGCAGGATCAGGAAGAAGGAGAAAGAGAAGGAGACGAGGAGGAGAGC
GACAGCGACAGCGACAGCAGCAACACATGACAACATTACACAAAAATATA
GCACAACAACAACAACAACAACAACATCAAATAGAAGAAGAAGAAGAAGA
AGAAAGAAGAAGAAAGAAGAAGAAAGGGAAGACACGAAAAGATGGA

protein sequence of NO20G02530.1

>NO20G02530.1-protein ID=NO20G02530.1-protein|Name=NO20G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MARLPFYLLVISTLLLVVTADSFLARPPSSSFLHALSNKRASTPASLPSC
SLDFLLQTRGGTAANAATTALPTSALVERKGGAAVALEGGKTLWEKSKVW
VFIGLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGALYTMFLWLVRA
RKMPTIAAPEMKTLSILGVLHAVSHITAITSLGAGAVSFTHIVKSAEPFF
SAVFAGLFFGQFFSLPVYAALIPVVSGVAYASLKELTFTWLSFWCAMASN
VVCAARGVVVKGMMGGKPTQSKDLTSSNMYSVLTILAALVLLPFGALVEG
PGLHAAWKAAAAHPSLTNGGTELAKYLVYSGLTFFLYNEVAFAALESLHP
ISHAVANTIKRVVIIVVSVLVFRNPMSTQSIIGSSTAVIGVLLYSLAKHY
CK*

mRNA from alignment at chr20:796848..800557-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO20G02530.1 ID=NO20G02530.1|Name=NO20G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=3710bp|location=Sequence derived from alignment at chr20:796848..800557- (Nannochloropsis oceanica)
TGGTGGGGCAGAACCAAGGGGCGGGAGGTCGAGCATGCGTCGCTCGCTGT
GCGGTGGTGGGGTGGGCGTGCGTTTGTTGCTTCATGATGGCCATTTGGCA
CACGGCGCAGCCACTTTCCGGGACATTTGAAAGAATATCCCACATTGCTT
GAGGTATTTCATTCAGCTTTATCCTCCTTTCCTTCCCATCTTAAAAAAAA
ATACGCGACACAGAGCCAACGGGATCGGACAAAGGACACTTCCCACCATA
ACCACATCAAGAAGTAGGCCAGTCAACGAAAATGGCGCGTCTTCCCTTCT
ACCTTCTAGTGATCTCCACTCTCCTTCTTGTCGTCACCGCCGACTCCTTC
TTGGCCCGTCCCCCCTCTTCCTCATTCCTGCATGCTCTCAGCAATAAGCG
CGCCTCTACCCCGGCTTCCCTCCCTTCATGCTCCCTCGACTTTCTCCTCC
AAACCCGTGGCGGCACCGCAGCGAATGCAGCCACTACTGCTCTTCCTACC
TCTGCCCTGGTAGAGAGGAAGGGCGGCGCAGCAGTCGCGCTGGAGGGGGG
GAAGACTCTGTGGGAAAAGTCCAAGGTGTGGGTGTTTATTGGCCTGTGGT
ACTTCTTCAACGTGGCGTTCAACATCTACAACAAGAAGGTACCTCGATAA
TTCGCATCCCAACCGCCCACCTCCTTCCCTTCCATTCACCCCTCATTCAC
GCAGTACATTGGAATACCCCATTACTCATATCTCTTTCTCCCTCCTTCCC
TTCCTCCTTCCCTCCCTCCTTCCCCCCTTCTTCCCTTCCTCCTGGACCTT
GCTCAGGTACTCAACGCGCTGCCCCTGCCCTGGACTGTCTCTATTGCCCA
ACTCGGCCTTGGCGCCCTCTACACCATGTTTCTCTGGCTCGTTCGCGCAC
GGTTCGTCCTCCCTTTCTCCCCTCCCTCCCTCCCTCCTTCATCCAGTCCT
CCCATCCTTCGTGTATACTTCATGCCACTCCCTCCTAACGCTCCCTCCCT
CCTCCCTTCCCCCCTCCCTTCCTACCCGCCCAGCAAAATGCCTACAATCG
CTGCCCCTGAGATGAAGACCCTCTCTATTCTCGGTGTCCTGCATGCCGTG
TCTCACATCACAGCCATCACTTCCCTTGGTGCCGGCGCGGTCAGGTATGA
CAAACACCTCCCTCCCTCGCTCCCTCCTTCCCTCCCTCATTCCTTGCTCC
TACCGTTTTTGGCATTAGTCCTACGACCTATCTAGGTGGTGATGTAAGAA
GGTGTTTCTTATTTCCCTCCTTACCTCCCTCTCCCCTTTTCTCCTATCTT
CTCTGACTTATCCATCCTTGCCCTCCCTCCCTCACCCCCTCCCTCCCTCC
CTCCCTCCTTTCTCCCTTCTTTCCCTGACTTATCAATCCCCTCCCTACTT
CCCTCCCTCCCTCGCCCCCTCCCTCCCTCCCTCAAGCTTCACCCACATCG
TCAAATCCGCAGAACCATTCTTCTCCGCCGTCTTCGCCGGCCTTTTCTTC
GGACAATTCTTCTCCCTGCCCGTTTACGCGGCTTTAATACCCGTCGTCTC
GGGTGTGGCTTACGCCTCTCTCAAGGAGCTAACCTTCACGTGGCTGTCCT
TCTGGTGCGCTATGGGTAAGTACTCGGCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTGCCTCCCTCCCTCCCCCCCTCCCTCCCCCCTCC
TTCCCTCCCTCCCTCCCTCCCTCTTCCCTTCCTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTTCCCCCCTCCCTCATGTATTTCTTTTGTGGACGAT
CTCTGATTACTTTTATTCACGTTTCGATGTTGATACCCTCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTTCCTCCTCCCTCCTTCC
CTCCAGCCTCTAACGTGGTGTGTGCGGCCCGTGGGGTCGTCGTCAAGGGC
ATGATGGGCGGGAAGCCCACCCAAAGGTTGGCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TTCCCTTCTTTCCTCCCTCCCTCCCTTCCTCCTTCGCTCCTTTCCTCCTT
GCATCCTTCCCTCCCATCATTCCTTTCCTCCTCTCTATGCTCCTCAAGAG
ATTCACCTCCCCCTCTCCCTCCCTCCCTCCCTCCCCCTTCATAGCAAGGA
CCTGACGAGCAGCAACATGTATAGCGTGCTGACCATCCTCGCCGCCCTCG
TCCTCCTCCCCTTTGGAGCCCTCGTGGAGGGACCGGGCTTGCATGCCGCC
TGGAAGGGTAGGGAGGGAGGGAGCGAGGGAGGGAGGGAGGGAGGGAAGGA
GGGAGGGATGTGTGTGTGTGTGTGTGTGTGACTCCGGTGCATGGGCTGTG
GCATCCTCTCTCTTCATTTCTCGTGCTTTGAGAAAGGACCTCCGTGTGTT
GCATCCCTCCCTCCCTTCCTTTCTATTTCCGAAATGCTAGACACTCCGTT
GATCTGCTTCCTTCCTCCCTCCCACCCTCCCTCCCTTCCTCTCTTCCTCC
CTTCGAGAAGCCGACCCTTCACTGATCAATCCCCCTTCCCTCCCTCCCTC
CCTCCCTCCTTTCCTCTCTCCCTCCCTAGCGGCGGCCGCCCACCCCTCCC
TGACGAATGGAGGCACCGAGCTGGCCAAATATCTAGTGTATTCAGGCTTG
ACTTTCTTTCTGTATAATGAGGTGAGGAAGGGAGGGAACTAAGAAAGGAG
GAAGGGGCTGGATCACTCCTCGTAAGGGAGGTGGAAACACTGCTGGACGG
CTCCTCACCCACCTCTTCCTCCCTCCCGCCCTCCCCCTCGCCCTCCCCAA
AGGTGGCCTTCGCGGCGCTGGAGTCGCTTCACCCGATATCCCACGCCGTT
GCCAACACCATCAAGCGTGTCGTCATCATTGTCGTCTCTGTCCTCGTCTT
CCGAAATCCGGTACACGCGCCTTTCTCCCTCACTCCCTCCCTCTTTCTGT
GTCGCTTCCTTCTTCTTTTTTAACTTCTTTGTCTTCTTCTCTTGTTTATT
TCTCATTTACGCACATAAATATGAATATCCCCTCGCTTTTCCCTGGCCCT
TCCAGCTCTCCCTCCTGTCTCTCGGTTTTTCTTTTCTTTCTTTCCACCAT
CGTCGTACCTGTTTTCACTTCTTCCCTCCCTCCCTCCCGCCCTCCTTCCT
TCCCTCCCCCCTTCCCTCAGATGTCCACCCAATCCATCATTGGCTCTTCC
ACGGCCGTCATCGGCGTCCTCCTCTACTCCCTCGCCAAGCATTATTGCAA
ATAAGCCCTCGTTTTTTTCCTTCCTCCCTCCCTTTTTTTCTCTTTCACTC
GGCTCCTGGTCCTTCCTCCCCTTCCCCTTCTCCTTCCTTCCTCCCTTTTC
TCTCCTGTGTTCTCCTGTCGTTGAGCTTGCGAGAAAGGAGAGGAGAAGGG
AGGGAGAAAGGGAGGAAGGGAAAGAGGGACCTGTTCTGTTCTATTATATA
CGAAATACGCCCTGCGCAGCAGGATCAGGAAGAAGGAGAAAGAGAAGGAG
ACGAGGAGGAGAGCGACAGCGACAGCGACAGCAGCAACACATGACAACAT
TACACAAAAATATAGCACAACAACAACAACAACAACAACATCAAATAGAA
GAAGAAGAAGAAGAAGAAAGAAGAAGAAAGAAGAAGAAAGGGAAGACACG
AAAAGATGGA

Coding sequence (CDS) from alignment at chr20:796848..800557-

>NO20G02530.1 ID=NO20G02530.1|Name=NO20G02530.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr20:796848..800557- (Nannochloropsis oceanica)
ATGGCGCGTCTTCCCTTCTACCTTCTAGTGATCTCCACTCTCCTTCTTGT
CGTCACCGCCGACTCCTTCTTGGCCCGTCCCCCCTCTTCCTCATTCCTGC
ATGCTCTCAGCAATAAGCGCGCCTCTACCCCGGCTTCCCTCCCTTCATGC
TCCCTCGACTTTCTCCTCCAAACCCGTGGCGGCACCGCAGCGAATGCAGC
CACTACTGCTCTTCCTACCTCTGCCCTGGTAGAGAGGAAGGGCGGCGCAG
CAGTCGCGCTGGAGGGGGGGAAGACTCTGTGGGAAAAGTCCAAGGTGTGG
GTGTTTATTGGCCTGTGGTACTTCTTCAACGTGGCGTTCAACATCTACAA
CAAGAAGGTACTCAACGCGCTGCCCCTGCCCTGGACTGTCTCTATTGCCC
AACTCGGCCTTGGCGCCCTCTACACCATGTTTCTCTGGCTCGTTCGCGCA
CGCAAAATGCCTACAATCGCTGCCCCTGAGATGAAGACCCTCTCTATTCT
CGGTGTCCTGCATGCCGTGTCTCACATCACAGCCATCACTTCCCTTGGTG
CCGGCGCGGTCAGCTTCACCCACATCGTCAAATCCGCAGAACCATTCTTC
TCCGCCGTCTTCGCCGGCCTTTTCTTCGGACAATTCTTCTCCCTGCCCGT
TTACGCGGCTTTAATACCCGTCGTCTCGGGTGTGGCTTACGCCTCTCTCA
AGGAGCTAACCTTCACGTGGCTGTCCTTCTGGTGCGCTATGGCCTCTAAC
GTGGTGTGTGCGGCCCGTGGGGTCGTCGTCAAGGGCATGATGGGCGGGAA
GCCCACCCAAAGCAAGGACCTGACGAGCAGCAACATGTATAGCGTGCTGA
CCATCCTCGCCGCCCTCGTCCTCCTCCCCTTTGGAGCCCTCGTGGAGGGA
CCGGGCTTGCATGCCGCCTGGAAGGCGGCGGCCGCCCACCCCTCCCTGAC
GAATGGAGGCACCGAGCTGGCCAAATATCTAGTGTATTCAGGCTTGACTT
TCTTTCTGTATAATGAGGTGGCCTTCGCGGCGCTGGAGTCGCTTCACCCG
ATATCCCACGCCGTTGCCAACACCATCAAGCGTGTCGTCATCATTGTCGT
CTCTGTCCTCGTCTTCCGAAATCCGATGTCCACCCAATCCATCATTGGCT
CTTCCACGGCCGTCATCGGCGTCCTCCTCTACTCCCTCGCCAAGCATTAT
TGCAAATAA

Synonyms

Publications