NO20G02310.1, NO20G02310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02310.1
Unique NameNO20G02310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length522
Alignment locationchr20:699608..700355 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:699608..700355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02310.1 vs.
Match: CBJ25500.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.4 bits (163), Expect = 5.000e-8
Identity = 58/136 (42.65%), Postives = 79/136 (58.09%), Query Frame = 0 
Query:    1 MSLGFLTESALLPSKAKTIQVDGRSQYSLKAIVAEGLSKREGAEEGREGGSKVGAAAAAARDKRGRRHRALEDEKGKKDVYRNKNKGVEDRRKKEEEEREEEEGRRKNGFEKVLRRKEGEYEMLIEEGMEGRRGGG 137
            MS GFLTESALLP+K+K I+VDGRS   LKAIV    +K + A+   EGG   G+A+   R  RG+R     D   +KD +   N+GVEDR +++E ER     +RK G ++V+  K   YE L +  + G    G
Sbjct:    1 MSFGFLTESALLPAKSKPIKVDGRSLVDLKAIV---YAKEQKAK--LEGGGGSGSASGGLRGLRGKRSSGDRDGGARKDPFARSNRGVEDRSQRDEIERVTASTKRKAG-QRVMAAKSSLYEKLAKGEIGGATRAG 130
The following BLAST results are available for this feature:
BLAST of NO20G02310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ25500.15.000e-842.65conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02310NO20G02310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02310.1NO20G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02310.1.cds1NO20G02310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02310.1.cds2NO20G02310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02310.1 ID=NO20G02310.1|Name=NO20G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=522bp
ATGTCCCTTGGCTTTCTAACCGAGTCAGCACTCTTGCCCTCCAAGGCCAA
GACCATTCAGGTCGATGGCCGCTCTCAGTATTCCCTGAAAGCCATCGTTG
CCGAAGGCCTGTCAAAACGAGAAGGAGCCGAGGAAGGAAGAGAGGGAGGA
AGCAAAGTAGGAGCCGCCGCAGCCGCCGCCCGGGACAAGCGGGGACGGCG
GCATCGTGCTTTGGAAGATGAGAAGGGGAAAAAGGATGTCTACAGGAATA
AAAACAAGGGAGTGGAAGATCGGCGGAAGAAGGAGGAGGAAGAGAGGGAA
GAGGAGGAGGGGAGGAGGAAAAATGGGTTTGAAAAAGTGCTGCGGAGGAA
AGAGGGGGAGTATGAGATGCTGATAGAGGAAGGAATGGAGGGAAGGAGGG
GGGGGGGGAGGACGAAAACGCGCTGGTGGACTTCGCCACGAAAAAGAGAT
ACCGTGAGCGTGAGCAAGGAGGGAGGAGGGAGGGAAGGAGGGAGGGGGGA
GGGAAGGGGAAGTGGTGGATGA
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protein sequence of NO20G02310.1

>NO20G02310.1-protein ID=NO20G02310.1-protein|Name=NO20G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MSLGFLTESALLPSKAKTIQVDGRSQYSLKAIVAEGLSKREGAEEGREGG
SKVGAAAAAARDKRGRRHRALEDEKGKKDVYRNKNKGVEDRRKKEEEERE
EEEGRRKNGFEKVLRRKEGEYEMLIEEGMEGRRGGGRTKTRWWTSPRKRD
TVSVSKEGGGREGGRGEGRGSGG*
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mRNA from alignment at chr20:699608..700355+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02310.1 ID=NO20G02310.1|Name=NO20G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=748bp|location=Sequence derived from alignment at chr20:699608..700355+ (Nannochloropsis oceanica)
ATGTCCCTTGGCTTTCTAACCGAGTCAGCACTCTTGCCCTCCAAGGCCAA
GACCATTCAGGTCGATGGCCGCTCTCAGTATTGTAAGTCATGAACGAAGC
ACAGGGAGGGCGGGAAAAAAGGATCTGCCCGAAGAGACGGGTTATGAGGA
AAATGAACAATTTGATTAGGGGGGGGGGGGGGGCAGGCCAAAGGGTTGCA
TGGTATCTGCAAATACACGAAAGGCACGATTTATTCACCCTTGAATTCAG
ATTTTTCTCTCATTCCCTCTTTTCCTCCCTCCTTTATTTTCTTTTCCCTC
CTCCCAAGCCCTGAAAGCCATCGTTGCCGAAGGCCTGTCAAAACGAGAAG
GAGCCGAGGAAGGAAGAGAGGGAGGAAGCAAAGTAGGAGCCGCCGCAGCC
GCCGCCCGGGACAAGCGGGGACGGCGGCATCGTGCTTTGGAAGATGAGAA
GGGGAAAAAGGATGTCTACAGGAATAAAAACAAGGGAGTGGAAGATCGGC
GGAAGAAGGAGGAGGAAGAGAGGGAAGAGGAGGAGGGGAGGAGGAAAAAT
GGGTTTGAAAAAGTGCTGCGGAGGAAAGAGGGGGAGTATGAGATGCTGAT
AGAGGAAGGAATGGAGGGAAGGAGGGGGGGGGGGAGGACGAAAACGCGCT
GGTGGACTTCGCCACGAAAAAGAGATACCGTGAGCGTGAGCAAGGAGGGA
GGAGGGAGGGAAGGAGGGAGGGGGGAGGGAAGGGGAAGTGGTGGATGA
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Coding sequence (CDS) from alignment at chr20:699608..700355+

>NO20G02310.1 ID=NO20G02310.1|Name=NO20G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at chr20:699608..700355+ (Nannochloropsis oceanica)
ATGTCCCTTGGCTTTCTAACCGAGTCAGCACTCTTGCCCTCCAAGGCCAA
GACCATTCAGGTCGATGGCCGCTCTCAGTATTCCCTGAAAGCCATCGTTG
CCGAAGGCCTGTCAAAACGAGAAGGAGCCGAGGAAGGAAGAGAGGGAGGA
AGCAAAGTAGGAGCCGCCGCAGCCGCCGCCCGGGACAAGCGGGGACGGCG
GCATCGTGCTTTGGAAGATGAGAAGGGGAAAAAGGATGTCTACAGGAATA
AAAACAAGGGAGTGGAAGATCGGCGGAAGAAGGAGGAGGAAGAGAGGGAA
GAGGAGGAGGGGAGGAGGAAAAATGGGTTTGAAAAAGTGCTGCGGAGGAA
AGAGGGGGAGTATGAGATGCTGATAGAGGAAGGAATGGAGGGAAGGAGGG
GGGGGGGGAGGACGAAAACGCGCTGGTGGACTTCGCCACGAAAAAGAGAT
ACCGTGAGCGTGAGCAAGGAGGGAGGAGGGAGGGAAGGAGGGAGGGGGGA
GGGAAGGGGAAGTGGTGGATGA
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Synonyms
Publications