NO20G02260.1, NO20G02260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02260.1
Unique NameNO20G02260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1245
Alignment locationchr20:683309..685090 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:683309..685090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02260.1 vs.
Match: EWM22010.1 (hypothetical protein Naga_100742g2 [Nannochloropsis gaditana])

HSP 1 Score: 521.9 bits (1343), Expect = 1.800e-144
Identity = 274/423 (64.78%), Postives = 325/423 (76.83%), Query Frame = 0 
Query:    1 MAYKAIAASSLMLGIAQGHIFSNWNTRTATTANKIVEIPASGGTRPVAAFGIATGNYDAATTVDFKADATLSSGMYIKGYAVSKAKHDEFVAACPQTAGELVSVYEWGYGPCDAFMSSLK---TQATTFQAG-TTPKEAG-GSTVKAAFSLSEPLDGVYVLFENLMGQPVTFSNAEFSLENVAEPVKAGEDLVFPAATVHMSAAVVKLADETPTEKTMVSFKAQGTAVEGAKSTAMMVVNKEQMTPARLGCTFGFYFGWFKRNTAGQNVCKQADFTYTMDGDILKLTGVIKAVT----PQDLAGDILADPSITLFQGDADYTFEAEAHGADSIFVVIPNRLDTPISVEDLSVSYEAADLMSHLMEDPSTIWKSGPVAGVCIAALVVLFSCMAAAYCLGKRKAALMVKKAEEKAERKQQGNALV 415
            MA+KA+  SS +  +AQGHIFS+W++RT T+  ++VEIP SGG+RPV AFG+ATG Y A T VDFKADATL+ GMY+KG+A+S+AK+ EF  AC Q   +LVSVYEWGYG CD FM SLK     ATTF  G  TPK+ G GSTVKAAF L +  +G+YV+FENLMG PVTFSNAEFS+  VAEPV+AGEDLVFP ATVHMSAAVV LADE PTEKT V+F+A+ T  +G K TA+M+VNKEQM P RLGCTFGFYFGWFK++  GQNVCK ADFTYT+DGDIL L GVIKAVT    PQ LAGDI  DP+ TLFQGD DY F+AE HGADS+FVVIPNR DTP++VE L+V Y+AA+L+ HL ++   I  +GP  GV IA LV + + M AAYC GKR+A    +K  EK E K QGNALV
Sbjct:    1 MAFKAVIVSSFITSLAQGHIFSSWDSRTDTSIKEVVEIPPSGGSRPVGAFGVATGEYPATTQVDFKADATLAGGMYVKGFALSQAKYAEFRTACSQEGDKLVSVYEWGYGACDNFMGSLKEAIDPATTFFVGQVTPKQDGTGSTVKAAFQLLDGGEGLYVVFENLMGGPVTFSNAEFSIAGVAEPVQAGEDLVFPPATVHMSAAVVPLADEVPTEKTTVTFRAKNT--DGGKQTALMLVNKEQMEPERLGCTFGFYFGWFKKHAPGQNVCKGADFTYTIDGDILTLKGVIKAVTPETAPQLLAGDIPVDPTSTLFQGDGDYAFDAEVHGADSMFVVIPNRRDTPVTVEGLTVKYQAANLVGHLAKESQKILDNGPATGVAIAVLVGVLALMMAAYCAGKRRAKATAEKTAEKVEGKPQGNALV 421
The following BLAST results are available for this feature:
BLAST of NO20G02260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22010.11.800e-14464.78hypothetical protein Naga_100742g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02260NO20G02260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02260.1NO20G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02260.1.cds1NO20G02260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02260.1.cds2NO20G02260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G02260.1.cds3NO20G02260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02260.1 ID=NO20G02260.1|Name=NO20G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp
ATGGCATATAAGGCCATTGCTGCTTCCTCCTTAATGTTAGGCATCGCCCA
GGGCCACATTTTCTCAAACTGGAACACCCGCACTGCCACGACCGCCAACA
AGATCGTGGAGATCCCTGCCTCGGGTGGGACGCGCCCCGTGGCCGCCTTT
GGCATTGCAACAGGCAATTACGATGCTGCAACCACCGTGGATTTCAAAGC
GGATGCGACCTTGAGCAGTGGGATGTACATCAAGGGGTACGCCGTCTCCA
AGGCCAAGCACGACGAGTTCGTTGCTGCGTGCCCTCAGACCGCGGGCGAG
CTGGTCTCAGTCTATGAATGGGGTTATGGCCCATGTGACGCTTTCATGAG
CTCTCTCAAGACACAGGCCACGACCTTCCAGGCTGGGACGACACCGAAGG
AGGCAGGGGGGTCTACGGTCAAAGCGGCCTTCTCCCTTTCGGAGCCTTTG
GACGGGGTATACGTTCTGTTCGAGAATCTGATGGGCCAGCCTGTCACCTT
CTCCAACGCAGAATTCTCCCTTGAGAACGTTGCGGAGCCTGTCAAGGCAG
GAGAGGACTTGGTCTTCCCTGCTGCGACTGTGCACATGTCGGCAGCGGTG
GTGAAGCTGGCCGACGAGACGCCTACAGAGAAAACGATGGTGTCGTTCAA
GGCCCAAGGGACGGCCGTTGAGGGCGCCAAATCCACGGCGATGATGGTGG
TGAACAAGGAGCAGATGACCCCTGCACGCTTGGGATGCACCTTTGGGTTC
TACTTCGGCTGGTTCAAGAGGAACACGGCCGGACAAAACGTGTGCAAACA
GGCAGATTTTACCTACACCATGGACGGGGACATCCTCAAGCTGACGGGTG
TGATCAAGGCCGTTACCCCCCAGGATCTGGCGGGTGATATCCTTGCAGAC
CCTTCCATCACCCTCTTCCAGGGCGATGCTGACTACACGTTTGAGGCGGA
AGCCCATGGAGCGGATAGTATATTCGTTGTTATCCCCAATAGGCTGGACA
CTCCGATTAGCGTAGAGGATCTTTCTGTCTCTTACGAGGCTGCTGACCTT
ATGTCGCATTTGATGGAGGACCCGAGCACCATTTGGAAGAGTGGCCCGGT
GGCGGGTGTGTGCATTGCGGCGCTTGTCGTGTTATTCTCCTGCATGGCAG
CCGCATACTGCCTGGGCAAGCGCAAGGCGGCACTGATGGTGAAGAAAGCG
GAGGAGAAGGCGGAGAGGAAGCAGCAGGGCAATGCCCTGGTTTAA
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protein sequence of NO20G02260.1

>NO20G02260.1-protein ID=NO20G02260.1-protein|Name=NO20G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MAYKAIAASSLMLGIAQGHIFSNWNTRTATTANKIVEIPASGGTRPVAAF
GIATGNYDAATTVDFKADATLSSGMYIKGYAVSKAKHDEFVAACPQTAGE
LVSVYEWGYGPCDAFMSSLKTQATTFQAGTTPKEAGGSTVKAAFSLSEPL
DGVYVLFENLMGQPVTFSNAEFSLENVAEPVKAGEDLVFPAATVHMSAAV
VKLADETPTEKTMVSFKAQGTAVEGAKSTAMMVVNKEQMTPARLGCTFGF
YFGWFKRNTAGQNVCKQADFTYTMDGDILKLTGVIKAVTPQDLAGDILAD
PSITLFQGDADYTFEAEAHGADSIFVVIPNRLDTPISVEDLSVSYEAADL
MSHLMEDPSTIWKSGPVAGVCIAALVVLFSCMAAAYCLGKRKAALMVKKA
EEKAERKQQGNALV*
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mRNA from alignment at chr20:683309..685090+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02260.1 ID=NO20G02260.1|Name=NO20G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp|location=Sequence derived from alignment at chr20:683309..685090+ (Nannochloropsis oceanica)
ATGGCATATAAGGCCATTGCTGCTTCCTCCTTAATGTTAGGCATCGCCCA
GGGCCACATTTTCTCAAACTGGAACACCCGCACTGCCACGACCGCCAACA
AGATCGTGGAGATCCCTGCCTCGGGTGGGACGCGCCCCGTGGCCGCCTTT
GGCATTGCAACAGGCAATGTAAGTACTAAACAAATATAATACAAGGGCAC
TAGCCTTCTTTTCATATGTGAGTTATGATGGCAACGCGGTCAAAGGGGGA
AGTGCGGGCGGAGAGAGGCAAACGGGAAGGAGGGAGGGCTGCCATATCAT
ACTTTTTGGGGGGAAATGGGGGGAAGGCGAGGAGCGGGAAAGGGGAGGGA
GGCGAATGGGAACAAAGGCCACCAATGTTGTGCAGCACGATAAGTGATGC
TTTCTTTCATTTCCATCAGGGGCTCGCATGTGTGTTCTTTCCTGAGAAGC
GAATTACGTACCGAAGGAGGGCAGGCATGATTCCCCCTCGCTCTTCCGCC
TTATGTAACCTAGATTTACCCGCATTCTCCCTCCCTCCTTCCCTCCCTCC
TACCTTCCTTCCTTCAAGTACGATGCTGCAACCACCGTGGATTTCAAAGC
GGATGCGACCTTGAGCAGTGGGATGTACATCAAGGGGTACGCCGTCTCCA
AGGCCAAGCACGACGAGTTCGTTGCTGCGTGCCCTCAGACCGCGGGCGAG
CTGGTCTCAGTCTATGAATGGGGTTATGGCCCATGTGACGCTTTCATGAG
CTCTCTCAAGACACAGGCCACGACCTTCCAGGCTGGGACGACACCGAAGG
AGGCAGGGGGGTCTACGGTCAAAGCGGCCTTCTCCCTTTCGGAGCCTTTG
GACGGGGTATACGTTCTGTTCGAGAATCTGATGGGCCAGCCTGTCACCTT
CTCCAACGCAGAATTCTCCCTTGAGAACGTTGCGGAGCCTGTCAAGGCAG
GAGAGGACTTGGTCTTCCCTGCTGCGACTGTGCACATGTCGGCAGCGGTG
GTGAAGCTGGCCGACGAGACGCCTACAGAGAAAACGATGGTGTCGTTCAA
GGCCCAAGGGACGGCCGTTGAGGGCGCCAAATCCACGGCGATGATGGTGG
TGAACAAGGAGCAGATGACCCCTGCACGCTTGGGATGCACCTTTGGGTTC
TACTTCGGCTGGTTCAAGAGGAACACGGCCGGACAAAACGTGTGCAAACA
GGCAGATTTTACCTACACCATGGACGGGGACATCCTCAAGCTGACGGGGT
AAGCAAGCTTTCCTTTCCTCCCTCCCCTCCTCCCTTCCCTCCCTTCCTTC
ATTTCCCTGTTGGTGTCTAGTTGACCTTACTCTTTACAACGCTTTCCCCT
CCCCCTGTCCCCCTCCTATCCCCCTTCTTCCTCAGTGTGATCAAGGCCGT
TACCCCCCAGGATCTGGCGGGTGATATCCTTGCAGACCCTTCCATCACCC
TCTTCCAGGGCGATGCTGACTACACGTTTGAGGCGGAAGCCCATGGAGCG
GATAGTATATTCGTTGTTATCCCCAATAGGCTGGACACTCCGATTAGCGT
AGAGGATCTTTCTGTCTCTTACGAGGCTGCTGACCTTATGTCGCATTTGA
TGGAGGACCCGAGCACCATTTGGAAGAGTGGCCCGGTGGCGGGTGTGTGC
ATTGCGGCGCTTGTCGTGTTATTCTCCTGCATGGCAGCCGCATACTGCCT
GGGCAAGCGCAAGGCGGCACTGATGGTGAAGAAAGCGGAGGAGAAGGCGG
AGAGGAAGCAGCAGGGCAATGCCCTGGTTTAA
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Coding sequence (CDS) from alignment at chr20:683309..685090+

>NO20G02260.1 ID=NO20G02260.1|Name=NO20G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr20:683309..685090+ (Nannochloropsis oceanica)
ATGGCATATAAGGCCATTGCTGCTTCCTCCTTAATGTTAGGCATCGCCCA
GGGCCACATTTTCTCAAACTGGAACACCCGCACTGCCACGACCGCCAACA
AGATCGTGGAGATCCCTGCCTCGGGTGGGACGCGCCCCGTGGCCGCCTTT
GGCATTGCAACAGGCAATTACGATGCTGCAACCACCGTGGATTTCAAAGC
GGATGCGACCTTGAGCAGTGGGATGTACATCAAGGGGTACGCCGTCTCCA
AGGCCAAGCACGACGAGTTCGTTGCTGCGTGCCCTCAGACCGCGGGCGAG
CTGGTCTCAGTCTATGAATGGGGTTATGGCCCATGTGACGCTTTCATGAG
CTCTCTCAAGACACAGGCCACGACCTTCCAGGCTGGGACGACACCGAAGG
AGGCAGGGGGGTCTACGGTCAAAGCGGCCTTCTCCCTTTCGGAGCCTTTG
GACGGGGTATACGTTCTGTTCGAGAATCTGATGGGCCAGCCTGTCACCTT
CTCCAACGCAGAATTCTCCCTTGAGAACGTTGCGGAGCCTGTCAAGGCAG
GAGAGGACTTGGTCTTCCCTGCTGCGACTGTGCACATGTCGGCAGCGGTG
GTGAAGCTGGCCGACGAGACGCCTACAGAGAAAACGATGGTGTCGTTCAA
GGCCCAAGGGACGGCCGTTGAGGGCGCCAAATCCACGGCGATGATGGTGG
TGAACAAGGAGCAGATGACCCCTGCACGCTTGGGATGCACCTTTGGGTTC
TACTTCGGCTGGTTCAAGAGGAACACGGCCGGACAAAACGTGTGCAAACA
GGCAGATTTTACCTACACCATGGACGGGGACATCCTCAAGCTGACGGGTG
TGATCAAGGCCGTTACCCCCCAGGATCTGGCGGGTGATATCCTTGCAGAC
CCTTCCATCACCCTCTTCCAGGGCGATGCTGACTACACGTTTGAGGCGGA
AGCCCATGGAGCGGATAGTATATTCGTTGTTATCCCCAATAGGCTGGACA
CTCCGATTAGCGTAGAGGATCTTTCTGTCTCTTACGAGGCTGCTGACCTT
ATGTCGCATTTGATGGAGGACCCGAGCACCATTTGGAAGAGTGGCCCGGT
GGCGGGTGTGTGCATTGCGGCGCTTGTCGTGTTATTCTCCTGCATGGCAG
CCGCATACTGCCTGGGCAAGCGCAAGGCGGCACTGATGGTGAAGAAAGCG
GAGGAGAAGGCGGAGAGGAAGCAGCAGGGCAATGCCCTGGTTTAA
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Synonyms
Publications