NO20G02010.1, NO20G02010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G02010.1
Unique NameNO20G02010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length919
Alignment locationchr20:594264..595630 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:594264..595630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G02010.1 vs.
Match: EWM22042.1 (methyltransferase-like protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 316.2 bits (809), Expect = 7.900e-83
Identity = 155/215 (72.09%), Postives = 177/215 (82.33%), Query Frame = 0 
Query:    1 MKLRHLESALSQVNGFGEPKWGLEQYLTPPHLAARALQCAASFDDLEGRVVADFGCGTGMLLVGAALMGSDEALSVGVDADPDALAIAQTNLHGMNVECALLRADVVAEAGVPFRSRSSDGSSMFDTVLMNPPFGTKNQGVDLLFVKRGLAVAPVVYSLHKTSTREFLIGRGAAACGSDVGAEVIATMHFDLPATYKFHKQKSVDIEVDLLRFSR 216
            MKLRHLES LSQV+GF  PKWGLEQYLTPPHLAAR L C AS+DDLEG  VAD GCGTGMLL GAALM  DE LSVGVDADPDAL+ A+ NL  + +  +LL+AD+V   G+PFR   S+GS+ FDTV+MNPPFGTKNQGVD+LFV+R LA AP+VYSLHKTSTR+FL+G GAA CG  V AEVIA M F++PATY FHKQKSV+I+VDL RFSR
Sbjct:   20 MKLRHLESFLSQVDGFEAPKWGLEQYLTPPHLAARVLHCVASYDDLEGCAVADLGCGTGMLLAGAALMDCDETLSVGVDADPDALSTARGNLDKLELNFSLLQADIVVNNGLPFRRVISEGSN-FDTVIMNPPFGTKNQGVDMLFVRRALAFAPIVYSLHKTSTRDFLMGCGAAGCGKHVQAEVIANMQFEIPATYSFHKQKSVNIDVDLFRFSR 233
The following BLAST results are available for this feature:
BLAST of NO20G02010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22042.17.900e-8372.09methyltransferase-like protein 5 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02010NO20G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G02010.1NO20G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G02010.1.cds1NO20G02010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G02010.1 ID=NO20G02010.1|Name=NO20G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=919bp
ACCACAGGCTCCCCGCCTTGACCGGCAATCATGAAGCTGCGGCACCTAGA
GTCAGCACTGAGCCAGGTGAATGGGTTTGGGGAGCCGAAGTGGGGCTTGG
AGCAGTATTTGACTCCGCCGCACCTGGCCGCCCGAGCCTTGCAGTGCGCG
GCCTCCTTTGACGATTTGGAAGGGCGTGTTGTGGCTGATTTTGGATGTGG
AACAGGCATGCTGCTTGTGGGAGCAGCACTGATGGGTAGCGATGAGGCCC
TGAGCGTGGGTGTGGACGCGGATCCCGACGCCTTGGCCATCGCGCAAACC
AACCTCCACGGAATGAACGTGGAATGTGCCCTGCTCCGGGCGGACGTCGT
TGCCGAGGCCGGCGTCCCGTTTAGAAGCAGATCCAGTGATGGCAGTAGCA
TGTTCGACACAGTACTGATGAATCCTCCCTTTGGGACCAAGAATCAAGGA
GTCGACTTGCTTTTTGTAAAGCGAGGCTTGGCCGTCGCTCCCGTCGTGTA
TTCCTTGCACAAGACATCGACCCGCGAATTTCTGATAGGCCGTGGAGCCG
CCGCCTGTGGGTCCGACGTGGGAGCGGAGGTGATAGCGACGATGCATTTC
GATTTGCCGGCCACTTACAAGTTTCACAAGCAGAAAAGTGTGGATATAGA
GGTCGACTTGTTGCGCTTCTCGCGCGGGGATGAACCACGTTGAAGGCATG
ACAAGGTAGCAGGCTGCACACGCTAATGGAAGGTCATGGCGGCTATAGTA
GCGCGTAAGAAATTCGTTTGCTCTGCCCTATTATATCTTTTGAGTAAATA
GAAATAGTGAGGTGTCTATTGGTGGATACAAGTGTACAAGAAAGGGGGAA
TCAAAAAAGTTTGCGTGCAGCACGAAGTGAAACCCATCAATTTTCCTGAT
TTTGATTGGTTGTACGATT
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protein sequence of NO20G02010.1

>NO20G02010.1-protein ID=NO20G02010.1-protein|Name=NO20G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MKLRHLESALSQVNGFGEPKWGLEQYLTPPHLAARALQCAASFDDLEGRV
VADFGCGTGMLLVGAALMGSDEALSVGVDADPDALAIAQTNLHGMNVECA
LLRADVVAEAGVPFRSRSSDGSSMFDTVLMNPPFGTKNQGVDLLFVKRGL
AVAPVVYSLHKTSTREFLIGRGAAACGSDVGAEVIATMHFDLPATYKFHK
QKSVDIEVDLLRFSRGDEPR*
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mRNA from alignment at chr20:594264..595630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G02010.1 ID=NO20G02010.1|Name=NO20G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp|location=Sequence derived from alignment at chr20:594264..595630+ (Nannochloropsis oceanica)
ACCACAGGCTCCCCGCCTTGACCGGCAATCATGAAGCTGCGGCACCTAGA
GTCAGCACTGAGCCAGGTGAATGGGTTTGGGGAGCCGAAGTGGGGCTTGG
AGCAGTATTTGACTCCGCCGCACCTGGCCGCCCGAGCCTTGCAGTGCGCG
GCCTCCTTTGACGATTTGGAAGGGCGTGTTGTGGCTGATTTTGGATGTGG
AACAGGCATGCTGCTTGTGGGAGCAGCACTGATGGGTAGCGATGAGGCCC
TGAGCGTGGGTGTGGACGCGGATCCCGACGCCTTGGCCATCGCGCAAACC
AACCTCCACGGAATGAACGTGGAATGTGCCCTGCTCCGGGCGGACGTCGT
TGCCGAGGCCGGCGTCCCGTTTAGAAGCAGATCCAGTGATGGCAGTAGCA
TGTTCGACACAGTACTGATGAATCCTCCCTTTGGGACCAAGAATCAAGGA
GTCGACTTGCTTTTTGTAAAGCGAGGCTTGGCCGTCGCTCCCGTCGTGTA
TTCCTTGCACAAGACATCGACCCGCGAATTTCTGATAGGCCGTGGAGCCG
CCGCCTGTGGGTCCGACGTGGGAGCGGAGGTGATAGCGACGATGCATTTC
GATTTGCCGGCCACTTACAAGTTTCACAAGCAGAAAAGTGTGGATATAGA
GGTCGACTTGTTGCGCTTCTCGCGCGGGGATGAACCACGTTGAAGGCATG
ACAAGGTATGTTAAATGTCATATTCCAAAATAGTAGGGTCTATTTTTAAA
GTTGTACACATTTTTACCTTTGTCTTGGTTCCATCTCTCCTACTTTCCTG
TTTGTCTGTACATGCATCGTTTTTAATCAGCTGTCTGCCTTCTTCTTCCT
CCGTACACCGGAGCAAGATCTTTCCAAGGTGTTCACGCTTTCATGTCGGT
GCAAAAACAAGTGGGCAATTAAATTAGCGTCTATTGAGTTGTGGCGCAGG
ATCACCTCCTCTCACCCAGTTTTTGGGCGGGGAACCTTCTCGATCCTTGT
GCTCCCCATCTCAGGAGAGGCCAGTCGTTGCCCGTACAAATACAGATTCT
TAGAGCTTGCATCCCTTCGCCAATTTTTTGTGTCTTCTACGCCTATAATG
CATCAATTTCCTCCTTTTCATTTCGACCACGCCTACGTATCTCCTACGCA
CAGGTAGCAGGCTGCACACGCTAATGGAAGGTCATGGCGGCTATAGTAGC
GCGTAAGAAATTCGTTTGCTCTGCCCTATTATATCTTTTGAGTAAATAGA
AATAGTGAGGTGTCTATTGGTGGATACAAGTGTACAAGAAAGGGGGAATC
AAAAAAGTTTGCGTGCAGCACGAAGTGAAACCCATCAATTTTCCTGATTT
TGATTGGTTGTACGATT
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Coding sequence (CDS) from alignment at chr20:594264..595630+

>NO20G02010.1 ID=NO20G02010.1|Name=NO20G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr20:594264..595630+ (Nannochloropsis oceanica)
ATGAAGCTGCGGCACCTAGAGTCAGCACTGAGCCAGGTGAATGGGTTTGG
GGAGCCGAAGTGGGGCTTGGAGCAGTATTTGACTCCGCCGCACCTGGCCG
CCCGAGCCTTGCAGTGCGCGGCCTCCTTTGACGATTTGGAAGGGCGTGTT
GTGGCTGATTTTGGATGTGGAACAGGCATGCTGCTTGTGGGAGCAGCACT
GATGGGTAGCGATGAGGCCCTGAGCGTGGGTGTGGACGCGGATCCCGACG
CCTTGGCCATCGCGCAAACCAACCTCCACGGAATGAACGTGGAATGTGCC
CTGCTCCGGGCGGACGTCGTTGCCGAGGCCGGCGTCCCGTTTAGAAGCAG
ATCCAGTGATGGCAGTAGCATGTTCGACACAGTACTGATGAATCCTCCCT
TTGGGACCAAGAATCAAGGAGTCGACTTGCTTTTTGTAAAGCGAGGCTTG
GCCGTCGCTCCCGTCGTGTATTCCTTGCACAAGACATCGACCCGCGAATT
TCTGATAGGCCGTGGAGCCGCCGCCTGTGGGTCCGACGTGGGAGCGGAGG
TGATAGCGACGATGCATTTCGATTTGCCGGCCACTTACAAGTTTCACAAG
CAGAAAAGTGTGGATATAGAGGTCGACTTGTTGCGCTTCTCGCGCGGGGA
TGAACCACGTTGA
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Synonyms
Publications