NO20G01830.1, NO20G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01830.1
Unique NameNO20G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1467
Alignment locationchr20:548594..550841 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:548594..550841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01830.1 vs.
Match: EWM22032.1 (protein disulfide isomerase [Nannochloropsis gaditana])

HSP 1 Score: 688.0 bits (1774), Expect = 2.200e-194
Identity = 343/488 (70.29%), Postives = 397/488 (81.35%), Query Frame = 0 
Query:    1 MALQGTAGATVEKDGSVLVLTDANFDDAIKEHRLLLVDFYAPWCGHCKKLEPAYSEAAATLAALDEPLYIAKLDATEHKEAAGKFEIRGFPTLKLFKDGVPIEYQGGRTAEDITNYMIKKSGPALSTISSVEEAEAFFAKHPKAALGMFDSLQSPAALGLAAFADKSDSFPLAYTAETAVLAKYQGGVGSLRFVTPEGVFSRALDFTEAETAETELSVWLFGHSIPVAVPFSAETSMELFSGPIRVHLIAFGDEATAKYADMVGAVKEAAGKHRTEALSILVGKTEARILQAFDLKEEDVPKVVIADMRAGSLKRFFFEGDLTKAAEVEAFLTDFLAGHLKAKLKSEEPAPEDMAGPVKVIKGKSFKAEVLDSDKDVLMEFYAPWCGHCKTLEPKWDVLGTKMSAVEHVMIAKMDYTANELDVAGIDIKGFPTILFFSAGNKAEPVVYKQEREVNAFVDFLKEHSSKPFELAGDAVEDEEDEDEKDEL 489
            +ALQ      ++KDGSVLVLTD+NF+DAIKEH+LLLVDFYAPWCGHCK+LEPAY+EAA  LAAL+EP++IAKLDATEHKEAA K  +RG+PTLKLFK+GVP++YQGGRTAE+I+ YMIKKSGPA++T++SVEEAEAFFAK P AAL + DSL S  AL +  FA+ SD+ P AYTAE AVL  Y    GSLRF TPE VF+R LDFT   TA  EL+ WLFGHSI     FS E SM LFSGPIRVHLIAFGD   A +AD V A+KE A K RT+ALSILVGK E RIL+AFDL E+DVP +VIADMRAG++KRFFFEGD+ KA + E FLT+F AGHLKAKLKSEEP PEDM   VKVIKGKSF+ EVL+SDKDVLMEFYAPWCGHCKTLEPKWDVLG +++ VEHVM AKMDYTANELDV G+DI+GFPTILFF A    EPVVYK  REV  F+ FLKEH+SKPFE     VE+EE+E+E++E+
Sbjct:   13 VALQSAMSTAIDKDGSVLVLTDSNFEDAIKEHKLLLVDFYAPWCGHCKRLEPAYAEAADILAALEEPIFIAKLDATEHKEAAAKHGVRGYPTLKLFKNGVPMDYQGGRTAEEISAYMIKKSGPAVTTVTSVEEAEAFFAKQPTAALALLDSLDSDIALAVTTFAESSDNVPFAYTAEPAVLTNYGAKAGSLRFATPEAVFTRFLDFTGGVTAFEELNTWLFGHSIAPMFEFSPEKSMHLFSGPIRVHLIAFGDATEAGFADTVAAIKEGANKFRTKALSILVGKNETRILEAFDLTEKDVPTMVIADMRAGAMKRFFFEGDMAKAFDTEKFLTNFFAGHLKAKLKSEEPVPEDMEKAVKVIKGKSFQKEVLESDKDVLMEFYAPWCGHCKTLEPKWDVLGDRLAGVEHVMTAKMDYTANELDVPGVDIRGFPTILFFPADKTKEPVVYKGGREVPDFLAFLKEHASKPFE-----VEEEEEEEEEEEV 495
The following BLAST results are available for this feature:
BLAST of NO20G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22032.12.200e-19470.29protein disulfide isomerase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01830NO20G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01830.1NO20G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01830.1.cds1NO20G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01830.1.cds2NO20G01830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01830.1.cds3NO20G01830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01830.1.cds4NO20G01830.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01830.1 ID=NO20G01830.1|Name=NO20G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1467bp
ATGGCCCTCCAGGGTACGGCAGGCGCCACCGTTGAGAAGGATGGGAGCGT
CCTTGTCCTCACGGATGCCAACTTTGACGATGCGATCAAGGAGCACCGCC
TGTTGTTGGTTGACTTCTACGCTCCGTGGTGTGGACACTGCAAGAAGTTG
GAGCCTGCTTACTCCGAGGCCGCTGCGACCCTGGCCGCCTTGGACGAGCC
CCTCTACATTGCCAAGCTGGACGCCACGGAGCACAAGGAGGCTGCTGGCA
AGTTTGAGATCCGCGGTTTTCCCACCTTGAAGCTCTTCAAGGACGGTGTA
CCCATCGAGTACCAGGGTGGGCGCACGGCGGAGGACATCACCAACTACAT
GATCAAGAAGTCTGGCCCGGCGCTCAGCACCATCTCCTCCGTTGAGGAGG
CCGAGGCCTTCTTCGCCAAGCACCCCAAGGCTGCCCTGGGCATGTTTGAC
TCGCTGCAGAGCCCCGCCGCGCTAGGCCTGGCCGCATTTGCCGACAAATC
CGACAGCTTCCCCCTGGCCTACACGGCGGAAACCGCCGTACTAGCCAAGT
ACCAGGGCGGCGTAGGCAGCCTGCGCTTCGTGACTCCCGAGGGTGTCTTC
TCCCGGGCGCTGGACTTCACCGAGGCTGAGACCGCGGAGACCGAGTTGAG
CGTGTGGCTGTTCGGGCACTCCATCCCCGTGGCGGTGCCCTTCTCAGCTG
AGACGTCCATGGAGCTCTTCTCGGGGCCCATCCGCGTGCACCTTATTGCC
TTCGGGGACGAGGCCACCGCGAAGTACGCGGACATGGTGGGGGCCGTGAA
AGAGGCCGCGGGCAAGCACCGCACGGAGGCGTTGTCCATCTTGGTGGGCA
AGACCGAGGCCCGCATCCTGCAGGCCTTCGATTTGAAGGAAGAGGACGTG
CCCAAGGTGGTGATTGCCGACATGCGCGCCGGCTCCTTGAAGCGCTTCTT
CTTCGAGGGAGATCTGACCAAAGCGGCGGAGGTGGAGGCTTTCCTCACCG
ATTTCCTGGCCGGCCACCTAAAGGCGAAGCTCAAGAGTGAAGAGCCCGCG
CCCGAGGACATGGCGGGGCCCGTCAAGGTCATCAAGGGCAAGAGCTTCAA
GGCCGAGGTGCTGGACTCGGACAAGGACGTGCTCATGGAGTTCTACGCTC
CCTGGTGCGGCCACTGCAAGACCCTGGAACCCAAGTGGGACGTACTGGGG
ACCAAGATGTCGGCGGTGGAGCACGTGATGATCGCCAAGATGGACTACAC
TGCCAACGAGCTGGACGTGGCCGGCATCGACATCAAGGGCTTCCCCACCA
TCCTCTTCTTTTCCGCGGGCAACAAGGCCGAGCCCGTCGTGTACAAGCAG
GAGAGGGAGGTGAATGCCTTCGTAGACTTCCTCAAGGAGCACTCCTCCAA
GCCCTTCGAGCTTGCCGGGGATGCGGTGGAGGACGAGGAGGACGAGGACG
AGAAGGACGAGCTCTAA
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protein sequence of NO20G01830.1

>NO20G01830.1-protein ID=NO20G01830.1-protein|Name=NO20G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MALQGTAGATVEKDGSVLVLTDANFDDAIKEHRLLLVDFYAPWCGHCKKL
EPAYSEAAATLAALDEPLYIAKLDATEHKEAAGKFEIRGFPTLKLFKDGV
PIEYQGGRTAEDITNYMIKKSGPALSTISSVEEAEAFFAKHPKAALGMFD
SLQSPAALGLAAFADKSDSFPLAYTAETAVLAKYQGGVGSLRFVTPEGVF
SRALDFTEAETAETELSVWLFGHSIPVAVPFSAETSMELFSGPIRVHLIA
FGDEATAKYADMVGAVKEAAGKHRTEALSILVGKTEARILQAFDLKEEDV
PKVVIADMRAGSLKRFFFEGDLTKAAEVEAFLTDFLAGHLKAKLKSEEPA
PEDMAGPVKVIKGKSFKAEVLDSDKDVLMEFYAPWCGHCKTLEPKWDVLG
TKMSAVEHVMIAKMDYTANELDVAGIDIKGFPTILFFSAGNKAEPVVYKQ
EREVNAFVDFLKEHSSKPFELAGDAVEDEEDEDEKDEL*
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mRNA from alignment at chr20:548594..550841+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01830.1 ID=NO20G01830.1|Name=NO20G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2248bp|location=Sequence derived from alignment at chr20:548594..550841+ (Nannochloropsis oceanica)
ATGGCCCTCCAGGGTACGGCAGGCGCCACCGTTGAGAAGGATGGGAGCGT
CCTTGTCCTCACGGATGCCAACTTTGACGATGCGATCAAGGTAAGCAAGC
ACCAAGGAGACGGGGCGGAACAATGAAGATGGTAGGTCGCCGCAGCAGAT
ATGGCCTTGAGTGTTCAAACCATGCTTTTATGTAGGCTCGTCACGCAGGC
ACAATATGCGGGATCGCACGCGCATTACATGCCGACTGGTCGTGGTTCTT
CGATACCCTCCAGCGTCCTGTGCTGGCGCTCTCGACTAGTCCCCAATTCA
AATTATAAAGTTTCGGAAAGAACTCGGCCTCTTCAGCATTCTCACGCCCT
CCGTCCGTGTAGCCTCCTGTATAACACATCTGTCGAGCAGCAGCTGCGTA
ACACACGCTTCTTCCTGCTCTGTGGTCCCCGCACTTACCAATCTCCGCTT
CGAGCCTTTCCCTTCCTCAGTAGTCCTCCACTCCATTCAATCACCCGTCC
CAAATCCTTCCGTCCCTTGCTGAATACAGGAGCACCGCCTGTTGTTGGTT
GACTTCTACGCTCCGTGGTGTGGACACTGCAAGAAGTTGGAGCCTGCTTA
CTCCGAGGCCGCTGCGACCCTGGCCGCCTTGGACGAGCCCCTCTACATTG
CCAAGCTGGACGCCACGGAGCACAAGGAGGCTGCTGGCAAGTTTGAGATC
CGCGGTTTTCCCACCTTGAAGCTCTTCAAGGACGGTGTACCCATCGAGTA
CCAGGTGCGGGACAGGGAGGAGTGTAAAAGGAAAAAGTGGATGGAGTTTG
TGGCTGTGACAAAGCACTGTGCATAGCCTTTTGTTTGCTCATCCGTCATT
TATCTCCCCCAACCATAACCGAATCGACACAGGGTGGGCGCACGGCGGAG
GACATCACCAACTACATGATCAAGAAGTCTGGCCCGGCGCTCAGCACCAT
CTCCTCCGTTGAGGAGGCCGAGGCCTTCTTCGCCAAGCACCCCAAGGCTG
CCCTGGGCATGTTTGACTCGCTGCAGAGCCCCGCCGCGCTAGGCCTGGCC
GCATTTGCCGACAAATCCGACAGCTTCCCCCTGGCCTACACGGCGGAAAC
CGCCGTACTAGCCAAGTACCAGGGCGGCGTAGGCAGCCTGCGCTTCGTGA
CTCCCGAGGGTGTCTTCTCCCGGGCGCTGGACTTCACCGAGGCTGAGACC
GCGGAGACCGAGTTGAGCGTGTGGCTGTTCGGGCACTCCATCCCCGTGGC
GGTGCCCTTCTCAGCTGAGACGTCCATGGAGCTCTTCTCGGGGCCCATCC
GCGTGCACCTTATTGCCTTCGGGGACGAGGCCACCGCGAAGTACGCGGAC
ATGGTGGGGGCCGTGAAAGAGGCCGCGGGCAAGCACCGCACGGAGGCGTT
GTCCATCTTGGTGGGCAAGACCGAGGCCCGCATCCTGCAGGCCTTCGATT
TGAAGGAAGAGGACGTGCCCAAGGTGGTGATTGCCGACATGCGCGCCGGC
TCCTTGAAGCGCTTCTTCTTCGAGGGAGATCTGACCAAAGCGGCGGAGGT
GGAGGCTTTCCTCACCGATTTCCTGGCCGGCCACCTAAAGGCGAAGCTCA
AGAGTGAAGAGCCCGCGCCCGAGGACATGGCGGGGCCCGTCAAGGTCATC
AAGGGCAAGAGCTTCAAGGCCGAGGTGCTGGACTCGGACAAGGACGTGCT
CATGGAGTTCTACGCTCCCTGGTGCGGCCACTGGTAAGTGGCCTGATGAA
AGCGGGGAGAAGAGAGAAAGAGGAACGAGAGGGAGATGTGATGGCCCATG
TTCAGGTGCTTCAGGAAGTGCGGTTTGCGTCATTCGGAGCGTCAGATGTT
GAAGGTACCACTCTGTCGCGGTATATTTTTTTCTCAAATTCGATTGCGTT
CGTGCACCCTTCCCCTTTCTCCTTTCCTCTCCCTGCCCCCCTCACAGCAA
GACCCTGGAACCCAAGTGGGACGTACTGGGGACCAAGATGTCGGCGGTGG
AGCACGTGATGATCGCCAAGATGGACTACACTGCCAACGAGCTGGACGTG
GCCGGCATCGACATCAAGGGCTTCCCCACCATCCTCTTCTTTTCCGCGGG
CAACAAGGCCGAGCCCGTCGTGTACAAGCAGGAGAGGGAGGTGAATGCCT
TCGTAGACTTCCTCAAGGAGCACTCCTCCAAGCCCTTCGAGCTTGCCGGG
GATGCGGTGGAGGACGAGGAGGACGAGGACGAGAAGGACGAGCTCTAA
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Coding sequence (CDS) from alignment at chr20:548594..550841+

>NO20G01830.1 ID=NO20G01830.1|Name=NO20G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=1467bp|location=Sequence derived from alignment at chr20:548594..550841+ (Nannochloropsis oceanica)
ATGGCCCTCCAGGGTACGGCAGGCGCCACCGTTGAGAAGGATGGGAGCGT
CCTTGTCCTCACGGATGCCAACTTTGACGATGCGATCAAGGAGCACCGCC
TGTTGTTGGTTGACTTCTACGCTCCGTGGTGTGGACACTGCAAGAAGTTG
GAGCCTGCTTACTCCGAGGCCGCTGCGACCCTGGCCGCCTTGGACGAGCC
CCTCTACATTGCCAAGCTGGACGCCACGGAGCACAAGGAGGCTGCTGGCA
AGTTTGAGATCCGCGGTTTTCCCACCTTGAAGCTCTTCAAGGACGGTGTA
CCCATCGAGTACCAGGGTGGGCGCACGGCGGAGGACATCACCAACTACAT
GATCAAGAAGTCTGGCCCGGCGCTCAGCACCATCTCCTCCGTTGAGGAGG
CCGAGGCCTTCTTCGCCAAGCACCCCAAGGCTGCCCTGGGCATGTTTGAC
TCGCTGCAGAGCCCCGCCGCGCTAGGCCTGGCCGCATTTGCCGACAAATC
CGACAGCTTCCCCCTGGCCTACACGGCGGAAACCGCCGTACTAGCCAAGT
ACCAGGGCGGCGTAGGCAGCCTGCGCTTCGTGACTCCCGAGGGTGTCTTC
TCCCGGGCGCTGGACTTCACCGAGGCTGAGACCGCGGAGACCGAGTTGAG
CGTGTGGCTGTTCGGGCACTCCATCCCCGTGGCGGTGCCCTTCTCAGCTG
AGACGTCCATGGAGCTCTTCTCGGGGCCCATCCGCGTGCACCTTATTGCC
TTCGGGGACGAGGCCACCGCGAAGTACGCGGACATGGTGGGGGCCGTGAA
AGAGGCCGCGGGCAAGCACCGCACGGAGGCGTTGTCCATCTTGGTGGGCA
AGACCGAGGCCCGCATCCTGCAGGCCTTCGATTTGAAGGAAGAGGACGTG
CCCAAGGTGGTGATTGCCGACATGCGCGCCGGCTCCTTGAAGCGCTTCTT
CTTCGAGGGAGATCTGACCAAAGCGGCGGAGGTGGAGGCTTTCCTCACCG
ATTTCCTGGCCGGCCACCTAAAGGCGAAGCTCAAGAGTGAAGAGCCCGCG
CCCGAGGACATGGCGGGGCCCGTCAAGGTCATCAAGGGCAAGAGCTTCAA
GGCCGAGGTGCTGGACTCGGACAAGGACGTGCTCATGGAGTTCTACGCTC
CCTGGTGCGGCCACTGCAAGACCCTGGAACCCAAGTGGGACGTACTGGGG
ACCAAGATGTCGGCGGTGGAGCACGTGATGATCGCCAAGATGGACTACAC
TGCCAACGAGCTGGACGTGGCCGGCATCGACATCAAGGGCTTCCCCACCA
TCCTCTTCTTTTCCGCGGGCAACAAGGCCGAGCCCGTCGTGTACAAGCAG
GAGAGGGAGGTGAATGCCTTCGTAGACTTCCTCAAGGAGCACTCCTCCAA
GCCCTTCGAGCTTGCCGGGGATGCGGTGGAGGACGAGGAGGACGAGGACG
AGAAGGACGAGCTCTAA
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Synonyms
Publications