NO20G01710.2, NO20G01710.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01710.2
Unique NameNO20G01710.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1336
Alignment locationchr20:521088..522680 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:521088..522680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01710.2 vs.
Match: EWM22066.1 (hypothetical protein Naga_100244g8 [Nannochloropsis gaditana])

HSP 1 Score: 260.8 bits (665), Expect = 4.800e-66
Identity = 134/255 (52.55%), Postives = 179/255 (70.20%), Query Frame = 0 
Query:    1 MPPRPRDDLRISQEDWFKFSKLAAGGFTFVLALSGFQCMQG-LARISAAHPLASALGLISVGTGSVMASLVADQAPSALCKAMGWAPPTHSARK--ITCGKDLLSPQKCSSLWQDPDQKEEEQILRVLRAAMMGIVIFKGFGGRFSSVAPSDVARPGAFFRMKGSLPATYEYASQVQKRALDGFGAKFGCHSCGRKEMLQYIGDHMPPKKVAMAMNRKWWRWLFNKRITQRFMPQCQPCSSIQSAAVRANKQVLV 253
            M   P  + R SQEDW K S+L AGG TF+L LS  Q +QG L  ISAA   A+  G++SV TGS++AS  AD+AP+ L  A+GW P     RK  +   +  +S    S L  D  +K+E ++L   R A++G+++FKG GGRFS VAPS+VA+PGAFF ++G+LPA  EYAS  QKR LD FG  +GCH+CGR++M  Y+GDHMPP+KVA+ M+R+WWR L   R+ QRF PQC+PCSSIQSAAVR+++++LV
Sbjct:    1 MTKYPDREWRFSQEDWLKASRLTAGGVTFLLTLSASQFLQGRLLGISAASRAATLAGMLSVSTGSMLASWAADEAPATLSVALGWVPEKDRRRKGGVIDKRGTISSSTFSLLGYDAGKKKE-RLLGAARTALVGMLLFKGLGGRFSGVAPSNVAQPGAFFNVRGTLPAGLEYASPKQKRRLDMFGWVYGCHTCGRRQMGDYVGDHMPPRKVAVEMSRRWWRRLLGIRVKQRFTPQCRPCSSIQSAAVRSDRRILV 254
The following BLAST results are available for this feature:
BLAST of NO20G01710.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200Expect = 4.80e-66 / Id = 52.55SequenceEWM22066.1
Match NameE-valueIdentityDescription
EWM22066.14.800e-6652.55hypothetical protein Naga_100244g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01710NO20G01710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01710.2NO20G01710.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01710.2.cds1NO20G01710.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01710.2.cds2NO20G01710.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01710.2 ID=NO20G01710.2|Name=NO20G01710.2|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp
ACAGGGAATGCCATCTGCGGCTGGAGGACTAGGTTGACAACCACAACAAG
CGGTGGCGCATATAGAGGAGGCAGAAGAATAGCCGGAGCTCTCGCATATT
ATTGTTACCCTCCTCCCGGCCGCCTCCACACCTCTCTTCTCCCCCTCTCC
CGCCACGCCACACGACAACCGCCATGCCCCCCCGGCCTAGAGACGATCTA
CGCATCTCACAGGAAGACTGGTTCAAGTTTTCCAAGCTTGCGGCGGGCGG
CTTTACATTTGTCCTGGCCCTGTCCGGCTTTCAATGTATGCAAGGCCTTG
CTCGTATTTCGGCCGCCCATCCCCTCGCAAGCGCCCTGGGCCTCATCTCG
GTTGGCACAGGGTCTGTCATGGCCTCTCTCGTCGCGGATCAAGCACCTTC
CGCCCTCTGTAAGGCTATGGGTTGGGCTCCGCCGACGCATTCGGCCCGTA
AAATCACCTGCGGCAAGGATCTCTTATCGCCCCAAAAATGTTCCTCATTG
TGGCAAGACCCGGACCAAAAGGAAGAAGAGCAGATACTGCGAGTTTTGCG
GGCAGCCATGATGGGGATCGTGATATTCAAGGGCTTTGGGGGACGATTCT
CTAGCGTGGCTCCTAGTGACGTCGCCCGCCCGGGAGCCTTTTTCCGTATG
AAAGGATCACTTCCTGCTACGTACGAATATGCCAGCCAGGTGCAGAAGCG
AGCGCTGGATGGTTTTGGGGCGAAGTTCGGGTGCCATTCTTGTGGACGGA
AGGAAATGTTGCAGTATATTGGTGATCACATGCCGCCCAAGAAGGTGGCG
ATGGCGATGAATCGGAAGTGGTGGCGGTGGTTGTTTAATAAGAGAATAAC
GCAACGTTTTATGCCACAATGCCAGCCATGTTCTAGCATTCAAAGTGCGG
CCGTGCGGGCCAACAAGCAAGTACTGGTAAGTATGCAGGAAGACTCTGGG
GGAGAAGGGATGGAAGGAGGGAGGGAAGCATGAGCGAGCTGCCGCTGCTT
GTCTGAAACTCATTCTCCTCTCCTTCTCCCTTTCTGCCAAATTACTCGAA
ATCGCACCATCACATTCTCTGCGTCCCACACAAATACACCCTGTATCTCT
CACACACGCACTCAAATGTGTGCTAGATCTACCACTGGTACCACGTGAGC
TCCCTCCGCCGGTACCACGTCACGGGACTTGTCGCGGAGGGGGCCCGTCT
ACTCGCAGGCGACGAATGGCTAGATAGTACCATGAAAGATGCGGTGGAGG
AGGCCAAGTGCTGGTGGCAGGGTGCGACTGAATTGAGGGACGACTTGCAG
CGGCGGTGGAAGTAGGGGGCGGGGACGGGGAGGGGG
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protein sequence of NO20G01710.2

>NO20G01710.2-protein ID=NO20G01710.2-protein|Name=NO20G01710.2|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MPPRPRDDLRISQEDWFKFSKLAAGGFTFVLALSGFQCMQGLARISAAHP
LASALGLISVGTGSVMASLVADQAPSALCKAMGWAPPTHSARKITCGKDL
LSPQKCSSLWQDPDQKEEEQILRVLRAAMMGIVIFKGFGGRFSSVAPSDV
ARPGAFFRMKGSLPATYEYASQVQKRALDGFGAKFGCHSCGRKEMLQYIG
DHMPPKKVAMAMNRKWWRWLFNKRITQRFMPQCQPCSSIQSAAVRANKQV
LVSMQEDSGGEGMEGGREA*
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mRNA from alignment at chr20:521088..522680+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01710.2 ID=NO20G01710.2|Name=NO20G01710.2|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp|location=Sequence derived from alignment at chr20:521088..522680+ (Nannochloropsis oceanica)
ACAGGGAATGCCATCTGCGGCTGGAGGACTAGGTTGACAACCACAACAAG
CGGTGGCGCATATAGAGGAGGCAGAAGAATAGCCGGAGCTCTCGCATATT
ATTGTTACCCTCCTCCCGGCCGCCTCCACACCTCTCTTCTCCCCCTCTCC
CGCCACGCCACACGACAACCGCCATGCCCCCCCGGCCTAGAGACGATCTA
CGCATCTCACAGGAAGACTGGTTCAAGTTTTCCAAGCTTGCGGCGGGCGG
CTTTACATTTGTCCTGGCCCTGTCCGGCTTTCAATGTATGCAAGGCCTTG
CTCGTATTTCGGCCGCCCATCCCCTCGCAAGCGCCCTGGGCCTCATCTCG
GTTGGCACAGGGTCTGTCATGGCCTCTCTCGTCGCGGATCAAGCACCTTC
CGCCCTCTGTAAGGCTATGGGTTGGGCTCCGCCGACGCATTCGGCCCGTA
AAATCACCTGCGGCAAGGATCTCTTATCGCCCCAAAAATGTTCCTCATTG
TGGCAAGACCCGGACCAAAAGGAAGAAGAGCAGATACTGCGAGTTTTGCG
GGCAGCCATGATGGGGATCGTGATATTCAAGGGCTTTGGGGGACGATTCT
CTAGCGTGGCTCCTAGTGACGTCGCCCGCCCGGGAGCCTTTTTCCGTATG
AAAGGATCACTTCCTGCTACGTACGAATATGCCAGCCAGGTGCAGAAGCG
AGCGCTGGATGGTTTTGGGGCGAAGTTCGGGTGCCATTCTTGTGGACGGA
AGGAAATGTTGCAGTATATTGGTGATCACATGCCGCCCAAGAAGGTGGCG
ATGGCGATGAATCGGAAGTGGTGGCGGTGGTTGTTTAATAAGAGGTGAGA
AGGAGGGGAAGGGAGGGAGGAAGGGCAGGGGTGGGAAGAGGAGGGGCTTC
CGCAGGGAAAGGCAGAAGGACTATCAGTGATTGTGTAGACCTTTGTCGGT
CATTTCTTGTATGCCGTCTTCAAAGGATAGGAAATAGGAAAGAGGGATCT
CGTGGAGTACACTGTGCGTAGCATTTTCTACAGCCGTCCCCCCTCAGTCC
TTCCTGCCCTCCCGCCTTACACTCTCTGACTCCCCCCTCCCCCACACACA
GAATAACGCAACGTTTTATGCCACAATGCCAGCCATGTTCTAGCATTCAA
AGTGCGGCCGTGCGGGCCAACAAGCAAGTACTGGTAAGTATGCAGGAAGA
CTCTGGGGGAGAAGGGATGGAAGGAGGGAGGGAAGCATGAGCGAGCTGCC
GCTGCTTGTCTGAAACTCATTCTCCTCTCCTTCTCCCTTTCTGCCAAATT
ACTCGAAATCGCACCATCACATTCTCTGCGTCCCACACAAATACACCCTG
TATCTCTCACACACGCACTCAAATGTGTGCTAGATCTACCACTGGTACCA
CGTGAGCTCCCTCCGCCGGTACCACGTCACGGGACTTGTCGCGGAGGGGG
CCCGTCTACTCGCAGGCGACGAATGGCTAGATAGTACCATGAAAGATGCG
GTGGAGGAGGCCAAGTGCTGGTGGCAGGGTGCGACTGAATTGAGGGACGA
CTTGCAGCGGCGGTGGAAGTAGGGGGCGGGGACGGGGAGGGGG
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Coding sequence (CDS) from alignment at chr20:521088..522680+

>NO20G01710.2 ID=NO20G01710.2|Name=NO20G01710.2|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr20:521088..522680+ (Nannochloropsis oceanica)
ATGCCCCCCCGGCCTAGAGACGATCTACGCATCTCACAGGAAGACTGGTT
CAAGTTTTCCAAGCTTGCGGCGGGCGGCTTTACATTTGTCCTGGCCCTGT
CCGGCTTTCAATGTATGCAAGGCCTTGCTCGTATTTCGGCCGCCCATCCC
CTCGCAAGCGCCCTGGGCCTCATCTCGGTTGGCACAGGGTCTGTCATGGC
CTCTCTCGTCGCGGATCAAGCACCTTCCGCCCTCTGTAAGGCTATGGGTT
GGGCTCCGCCGACGCATTCGGCCCGTAAAATCACCTGCGGCAAGGATCTC
TTATCGCCCCAAAAATGTTCCTCATTGTGGCAAGACCCGGACCAAAAGGA
AGAAGAGCAGATACTGCGAGTTTTGCGGGCAGCCATGATGGGGATCGTGA
TATTCAAGGGCTTTGGGGGACGATTCTCTAGCGTGGCTCCTAGTGACGTC
GCCCGCCCGGGAGCCTTTTTCCGTATGAAAGGATCACTTCCTGCTACGTA
CGAATATGCCAGCCAGGTGCAGAAGCGAGCGCTGGATGGTTTTGGGGCGA
AGTTCGGGTGCCATTCTTGTGGACGGAAGGAAATGTTGCAGTATATTGGT
GATCACATGCCGCCCAAGAAGGTGGCGATGGCGATGAATCGGAAGTGGTG
GCGGTGGTTGTTTAATAAGAGAATAACGCAACGTTTTATGCCACAATGCC
AGCCATGTTCTAGCATTCAAAGTGCGGCCGTGCGGGCCAACAAGCAAGTA
CTGGTAAGTATGCAGGAAGACTCTGGGGGAGAAGGGATGGAAGGAGGGAG
GGAAGCATGA
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Synonyms
Publications