NO20G01540.1, NO20G01540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01540.1
Unique NameNO20G01540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length957
Alignment locationchr20:476548..477504 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:476548..477504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01540.1 vs.
Match: EWM22096.1 (2-hydroxy-3-oxopropionate reductase [Nannochloropsis gaditana])

HSP 1 Score: 494.2 bits (1271), Expect = 3.000e-136
Identity = 250/313 (79.87%), Postives = 273/313 (87.22%), Query Frame = 0 
Query:    1 MATSSDTEICGFIGLGLMGLGMANNLLNKRKHHLIIWNRDTSKSVDLAAEFPGRVTVASTPKEVVATAQVTFSMLSTLEASTAVFEGPEGMLAGVGPTTSIVDCATLTPERMAEMAALVEGKGGIFLEAPVSGSKAPAEQGTLIFMCAGNKVLYERVSEDLDAMGKAKYFLGTVGAASRMKIVVNMTMGGMLACFAEGLGLAKAADLPLGDLLAILDGGACSCPMFQLKGPKMLQRKYDTAFPLKHAQKDMRFAVELGDKLAQPLPVAAAANEVYKRARRHGHDDHDFSAVAEACMPPQVVKGEASNDKAVNG 314
            M ++ D  +CGFIGLGLMG+GMA NLL KR+HHLIIWNRDT K+ DLA  FPGRVTVA TPKEVV+TAQVTFSMLSTLEAS AVFEGP+G+LAG GP+T+IVDCATLTPERMAEMA  VE KG IFLEAPVSGSK PAEQGTLIFMCAG+K LYERV+EDLDAMGKA+YFLG VGAASRMKIVVNMTMGGMLACF+EGLGLAKAADLPL DLL ILDGGAC+CPMF+LKGP ML+R YD AFPLKHAQKDMRFAVELGDKLAQPLPV+AAANEVYKRAR+ GH+D DFSAVAE  +          +DK VNG
Sbjct:    1 MTSTIDAGVCGFIGLGLMGMGMAKNLLKKRQHHLIIWNRDTGKAQDLATAFPGRVTVAHTPKEVVSTAQVTFSMLSTLEASAAVFEGPDGVLAGTGPSTAIVDCATLTPERMAEMATQVEEKGAIFLEAPVSGSKGPAEQGTLIFMCAGDKALYERVAEDLDAMGKARYFLGAVGAASRMKIVVNMTMGGMLACFSEGLGLAKAADLPLEDLLEILDGGACACPMFKLKGPHMLRRSYDAAFPLKHAQKDMRFAVELGDKLAQPLPVSAAANEVYKRARQQGHEDDDFSAVAEVTV---------HHDKQVNG 304
The following BLAST results are available for this feature:
BLAST of NO20G01540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22096.13.000e-13679.872-hydroxy-3-oxopropionate reductase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01540NO20G01540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01540.1NO20G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01540.1.cds1NO20G01540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01540.1 ID=NO20G01540.1|Name=NO20G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=957bp
ATGGCGACCAGCTCTGACACAGAGATATGCGGCTTTATCGGTCTTGGTCT
CATGGGATTAGGGATGGCCAACAATCTGCTGAACAAACGAAAGCACCACC
TGATCATCTGGAACCGCGACACCAGCAAATCCGTCGACCTCGCCGCCGAA
TTCCCCGGCCGGGTCACCGTGGCGAGCACCCCCAAAGAAGTTGTGGCCAC
AGCACAAGTTACTTTTTCGATGCTCTCCACGCTGGAGGCCTCAACAGCTG
TTTTTGAGGGCCCGGAAGGAATGTTGGCGGGCGTAGGCCCGACTACTTCT
ATTGTTGATTGCGCGACGCTGACCCCGGAACGAATGGCCGAGATGGCGGC
GCTTGTGGAGGGAAAAGGCGGAATTTTCCTAGAGGCACCGGTATCGGGGA
GCAAGGCGCCGGCTGAACAGGGGACATTGATTTTTATGTGTGCAGGAAAT
AAAGTGTTGTATGAGCGAGTTAGTGAGGATTTGGATGCCATGGGCAAGGC
AAAATACTTTTTGGGAACAGTGGGGGCGGCCAGCAGGATGAAGATTGTGG
TTAATATGACCATGGGGGGGATGTTGGCGTGCTTTGCAGAGGGATTGGGG
CTGGCGAAGGCGGCAGATTTGCCCCTGGGCGATTTATTGGCTATTTTGGA
TGGCGGGGCATGTTCTTGTCCCATGTTCCAGTTGAAGGGACCGAAGATGT
TGCAAAGGAAGTATGACACGGCTTTTCCTCTCAAGCATGCCCAAAAAGAC
ATGCGGTTTGCGGTTGAGTTGGGAGATAAGCTCGCGCAGCCGTTGCCGGT
GGCGGCGGCGGCGAATGAGGTGTACAAGCGGGCGCGGAGGCATGGGCATG
ATGATCACGACTTTAGTGCTGTGGCTGAGGCTTGTATGCCGCCGCAAGTG
GTGAAGGGGGAGGCAAGCAATGATAAGGCGGTAAATGGGAAGAGCGAGCG
ACCATAA
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protein sequence of NO20G01540.1

>NO20G01540.1-protein ID=NO20G01540.1-protein|Name=NO20G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MATSSDTEICGFIGLGLMGLGMANNLLNKRKHHLIIWNRDTSKSVDLAAE
FPGRVTVASTPKEVVATAQVTFSMLSTLEASTAVFEGPEGMLAGVGPTTS
IVDCATLTPERMAEMAALVEGKGGIFLEAPVSGSKAPAEQGTLIFMCAGN
KVLYERVSEDLDAMGKAKYFLGTVGAASRMKIVVNMTMGGMLACFAEGLG
LAKAADLPLGDLLAILDGGACSCPMFQLKGPKMLQRKYDTAFPLKHAQKD
MRFAVELGDKLAQPLPVAAAANEVYKRARRHGHDDHDFSAVAEACMPPQV
VKGEASNDKAVNGKSERP*
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mRNA from alignment at chr20:476548..477504+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01540.1 ID=NO20G01540.1|Name=NO20G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=957bp|location=Sequence derived from alignment at chr20:476548..477504+ (Nannochloropsis oceanica)
ATGGCGACCAGCTCTGACACAGAGATATGCGGCTTTATCGGTCTTGGTCT
CATGGGATTAGGGATGGCCAACAATCTGCTGAACAAACGAAAGCACCACC
TGATCATCTGGAACCGCGACACCAGCAAATCCGTCGACCTCGCCGCCGAA
TTCCCCGGCCGGGTCACCGTGGCGAGCACCCCCAAAGAAGTTGTGGCCAC
AGCACAAGTTACTTTTTCGATGCTCTCCACGCTGGAGGCCTCAACAGCTG
TTTTTGAGGGCCCGGAAGGAATGTTGGCGGGCGTAGGCCCGACTACTTCT
ATTGTTGATTGCGCGACGCTGACCCCGGAACGAATGGCCGAGATGGCGGC
GCTTGTGGAGGGAAAAGGCGGAATTTTCCTAGAGGCACCGGTATCGGGGA
GCAAGGCGCCGGCTGAACAGGGGACATTGATTTTTATGTGTGCAGGAAAT
AAAGTGTTGTATGAGCGAGTTAGTGAGGATTTGGATGCCATGGGCAAGGC
AAAATACTTTTTGGGAACAGTGGGGGCGGCCAGCAGGATGAAGATTGTGG
TTAATATGACCATGGGGGGGATGTTGGCGTGCTTTGCAGAGGGATTGGGG
CTGGCGAAGGCGGCAGATTTGCCCCTGGGCGATTTATTGGCTATTTTGGA
TGGCGGGGCATGTTCTTGTCCCATGTTCCAGTTGAAGGGACCGAAGATGT
TGCAAAGGAAGTATGACACGGCTTTTCCTCTCAAGCATGCCCAAAAAGAC
ATGCGGTTTGCGGTTGAGTTGGGAGATAAGCTCGCGCAGCCGTTGCCGGT
GGCGGCGGCGGCGAATGAGGTGTACAAGCGGGCGCGGAGGCATGGGCATG
ATGATCACGACTTTAGTGCTGTGGCTGAGGCTTGTATGCCGCCGCAAGTG
GTGAAGGGGGAGGCAAGCAATGATAAGGCGGTAAATGGGAAGAGCGAGCG
ACCATAA
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Coding sequence (CDS) from alignment at chr20:476548..477504+

>NO20G01540.1 ID=NO20G01540.1|Name=NO20G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at chr20:476548..477504+ (Nannochloropsis oceanica)
ATGGCGACCAGCTCTGACACAGAGATATGCGGCTTTATCGGTCTTGGTCT
CATGGGATTAGGGATGGCCAACAATCTGCTGAACAAACGAAAGCACCACC
TGATCATCTGGAACCGCGACACCAGCAAATCCGTCGACCTCGCCGCCGAA
TTCCCCGGCCGGGTCACCGTGGCGAGCACCCCCAAAGAAGTTGTGGCCAC
AGCACAAGTTACTTTTTCGATGCTCTCCACGCTGGAGGCCTCAACAGCTG
TTTTTGAGGGCCCGGAAGGAATGTTGGCGGGCGTAGGCCCGACTACTTCT
ATTGTTGATTGCGCGACGCTGACCCCGGAACGAATGGCCGAGATGGCGGC
GCTTGTGGAGGGAAAAGGCGGAATTTTCCTAGAGGCACCGGTATCGGGGA
GCAAGGCGCCGGCTGAACAGGGGACATTGATTTTTATGTGTGCAGGAAAT
AAAGTGTTGTATGAGCGAGTTAGTGAGGATTTGGATGCCATGGGCAAGGC
AAAATACTTTTTGGGAACAGTGGGGGCGGCCAGCAGGATGAAGATTGTGG
TTAATATGACCATGGGGGGGATGTTGGCGTGCTTTGCAGAGGGATTGGGG
CTGGCGAAGGCGGCAGATTTGCCCCTGGGCGATTTATTGGCTATTTTGGA
TGGCGGGGCATGTTCTTGTCCCATGTTCCAGTTGAAGGGACCGAAGATGT
TGCAAAGGAAGTATGACACGGCTTTTCCTCTCAAGCATGCCCAAAAAGAC
ATGCGGTTTGCGGTTGAGTTGGGAGATAAGCTCGCGCAGCCGTTGCCGGT
GGCGGCGGCGGCGAATGAGGTGTACAAGCGGGCGCGGAGGCATGGGCATG
ATGATCACGACTTTAGTGCTGTGGCTGAGGCTTGTATGCCGCCGCAAGTG
GTGAAGGGGGAGGCAAGCAATGATAAGGCGGTAAATGGGAAGAGCGAGCG
ACCATAA
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Synonyms
Publications