NO20G01480.1, NO20G01480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01480.1
Unique NameNO20G01480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length7623
Alignment locationchr20:457791..465697 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:457791..465697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO20G01480.1 vs.
Match: EWM22089.1 (na+ solute symporter [Nannochloropsis gaditana])

HSP 1 Score: 795.4 bits (2053), Expect = 1.300e-226
Identity = 424/567 (74.78%), Postives = 475/567 (83.77%), Query Frame = 0
Query:    1 MARPVTNSNPPRPQPPADQTFIIASYVCAILTLFGFAGVAVILSRRHYSTDIDTFLTARRSQPLLRVAWSFFASSIGAWAIFLPASYPAFGGWISIITYAVSTGLPLLLISEFGRKILKRAPDVLSLNDFAHRMYGRPVQLFVIILSLVNMSVALISEYTAIGDLFEHYVGGPSRVYIILLIGLVTAIYTAKGGLLVSLLTDQLQAGLVLFLILIASTYLAVNFREPLHRPFPERLGVNYSGLSSIFSLPISLLSSACYQESFWQRVWSAEDKRSLRYGAALGFALTTVVIAFFGTVGWLGLLAELPPLDDHNNLAFFVPFSDEATGSHLSSMVIRVMLVVLATTMNESAVDSLQNAIVSTLSSSFLKNKPVSWSRALVFVVNAPIVLIALQSFALLDLFLVMNILTTTSTFPLLSALWLPRVSGSTVLLSSAVSLFCTCLLGVLIQGQGILKGLIWTFTSQLNQYDWRIFVVAAFTSVACTFGLWFGRDTGGKGFTVLSMGALEGSIGNHLS----QPFFARC-CPRAFSISLSLSSSLSGTAAAASDDGVACAGGEEGSGSKWLG 563
            MA  +T + PP P  PA+ TF IASYVCA++TL GFA +A+ +SRRH S D+DTFLTAR SQP+LRVAWSFFASSIGAWAIFLPASYPAFGGW+SIITYAVSTGLPLLLISEFGRKILKR PDVLSLNDFAHR YGRPVQ+FVI+LSL+NMSVALISEYTAIGDLFEHYVGGPSR+YII+L+GLVTA+YTAKGGLL+SLLTDQLQA L+L LILIAS YL VNFREPL +P PERLG+NYSG SSIFSLPISLLSSACYQESFWQRVW+AEDKRSLR GA LGF LTT+VI FFGTVGW+GL A+LPPLDDHNNLAFFVPFSD  TG +  ++V+RV+LVVL+TTMNESAVDSLQNAIVSTLSSS L ++PVSWSRALVFVVNAPIV+IALQS+ALLDLFL MNI+T TSTFPLLSALWLPRVSG TVL SSAVSL CTCL+GV+ +GQG+ KGL WTFTSQLN+YDWRIF+VAA TSV CTFGLWF  DT G GFTV +   L G +GN+L      P  ARC C    S     +SS+ G + +         G  +  G K LG
Sbjct:   39 MAPTLTPTGPP-PTSPANLTFTIASYVCAVITLVGFAAIALTMSRRHQSRDVDTFLTARASQPMLRVAWSFFASSIGAWAIFLPASYPAFGGWLSIITYAVSTGLPLLLISEFGRKILKRTPDVLSLNDFAHRAYGRPVQVFVIVLSLLNMSVALISEYTAIGDLFEHYVGGPSRIYIIILVGLVTAVYTAKGGLLISLLTDQLQAALILVLILIASLYLVVNFREPLRQPLPERLGINYSGFSSIFSLPISLLSSACYQESFWQRVWAAEDKRSLRQGALLGFMLTTLVIGFFGTVGWVGLWADLPPLDDHNNLAFFVPFSDPVTGRNAGALVMRVLLVVLSTTMNESAVDSLQNAIVSTLSSSLLVDRPVSWSRALVFVVNAPIVVIALQSYALLDLFLAMNIITATSTFPLLSALWLPRVSGPTVLFSSAVSLICTCLVGVITEGQGVAKGLKWTFTSQLNEYDWRIFLVAALTSVCCTFGLWFVVDTRGLGFTV-AAPELNGDLGNNLGPDVHPPLLARCGCWPILS-----ASSIGGASGS--------GGKRDQKGGKLLG 590          
The following BLAST results are available for this feature:
BLAST of NO20G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22089.11.300e-22674.78na+ solute symporter [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01480NO20G01480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01480.1NO20G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01480.1.cds1NO20G01480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01480.1.cds2NO20G01480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G01480.1.cds3NO20G01480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01480.1 ID=NO20G01480.1|Name=NO20G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=7623bp
CACGCGCGGGGTCTTTTAAAATTGTACTTTCTAATCATGTCTATTTTTCA
TTTGTGCTTCTAATCATCTCCACACTTACTACATCGCTCCTTCAACCTCT
TTCCCCCCCTCCTTCCCTTTTTCCTTATAACCCAATCCAATACGACCTTC
CATTAGGGTTATGAATCGGAGTCACCACCGGCCCCGTCAATGCCCACTCA
TACCACACTTTTCTCGAATTAACGTTCCTCCATATGTGTACCTCCACCTG
CACCCCCTCCGGTGCATACGCAGGTGTCCTCAAGGGGAAATAAAGGGGAA
ACCACGAGAACATACCCGTAGAGAAAGTCTGCGGCACAATTGAAATGAAG
ATATTGTCATACAACCTCGCGTTAAAATAACCAGCAAATCCATGTATGGT
TGCCGCAGTTGTCGCCGGAAACCTCAGGCAAGCATAACGCGTGTTATCGA
TTTTTTCCGCGCCATTTGGGTGTGAGAAAGTAAAACAGGGCTGGGCTTCG
GAGAGCTGACAAAAATTGTGGAGCTTCACGACGTAGGCAGTTTCCATGTG
CTTGACGTCTTTGTAGCTGTGGACCTCATTCCAGAGCTTAGAGGAGGAGA
TGGGGGCAAGATAAGATGTGTACTCACACGGAATTGATATCCCCCCTTCC
TTGAGAAAGGCCTGTGCCTTATCCAAGCACTCTGGAGAGAGCTCGTTATC
ACCGAAAGAGCCTAGTAGCTCACTGACCAAAATATCGGCCTTTTCAGGGG
CGGCCCATACTCGCATATCAGTGGCAACAACTGTCACATTGCTCCACTCC
TCACATCTCACCATATTTCTCAACGTCACCACGGCGTTCGGGTTCTTTTC
AACTGCATAGACACGTACCTCCCGTTCTGCCCTGGCAGCAGCGGCAAGGG
ATGCTCGGACCAAGGGGCCACGACCAGCGCCGACAACCATGACGACGGAG
GTGATGGAGGAAGGGGTGGACGAGAGGGCGGCAGCCACGGCATCCTCGTA
ACGCGCGTATTTGACGGGATCTTTTTCGAAGGTCTCGTAGGTTTGAGATT
CCAGGTTATCCATGAGGGGTTGTAAGGGGGCTTGGAGATAGTCGTAATAA
GGAGATTCAAAGCGATCTTGCTCGGGAACGGGGAAAAGTTTTAGGCGCAG
GTGCTCTAGGTACTGTAGATAGATTTCATACCCTCCTGCATGCCTGGCCC
TCCCATTCAGAATTATTTGAATTTTTAATACGTACATCTCCAGCACAAAA
TACTGGTGGGGCTTGCTCAGCACGGGGAAGCCCTTTTTGTTGGTGAGGAA
GATTGATGTGGGGAAAATGATGGCTTTGACGGGCTCTCCGCGCCAACGTT
GCAGAGTCTGGCGAGGGGGGAGGTCTTCGGTAACTTCCAGGGCGACGCCT
AGGGAGGCATTGAATTCGCAGAGGGTACGAAGGCGGTTCCACGTCTCCCA
GGGATCTTCTTTGGCGGAAGGGACCATGTTCATCAAGTAGGAGGACGAGA
GAGAAGAGATGGGTTGTTGCTGTTTTTGTTTTATGCTGCTCGTTTGATTA
GCGCCTGCTGCAGCGGCAGTATTTGATCCGTTGGTTGCTGTGGGCGTTAC
TGTGCTTCCCAATTGATCGCCTTCGTTACTAACCCTGTGGTTGCATTCCT
GCTGCCGATGGTGTTGCTGCTGTTGCTGTTGCTGCTGCTCTTCCTTGTCG
TCGTCCACATCGTCCTCGGCCTTGCATCGCACCAAGGGAATCCGCACCCA
CAGCTGCAGCACCGTCGGCTGTGATACTGCTTGGTTGATAAGCCGAGCAT
AGTTGGCACAGTTTGGTCGGGGCATCGGCATCAGGACAGCAGGCACGGCC
AAATGCGAGGCCCACGCCAACTCTTGCTTCAGCGCTGTCTCTGCTGCCAA
ACGCACGTCCACATCCGGGTTTCCTGGGTCAAGCCATTCTGACACCTTGC
CAACGATACACGTGGTCCAAGTTCGACTGTCTACTTCCATGTCACTCCTT
GTCAGGGTACCGTGGCGGGCTTCGCTTACCCCTACGTTGTCCCGCTCGAA
GCGTGGGTGTACGAGGGGGATGGCCACGAAATCGAACTTGGCTATGCGTG
CCTCTTCTAATAGATCCTTCAGGTCCGAGACCGTGTTAGTCTCCCAGCCT
GCCGTCAATTTTTCCAGCACCATCTTGCCTTGTAGGAGTATGGGAGGAAA
GAGACTCGCTGTGGTATGTGATGATGGGGTAGTATGGGGTGGTTGGGAGG
GGAAAGGAGGTCGCATGAGTGGCTGGAAGACGGGCGGCGCAATTAAGTGA
GAGCCCGACATGCAAAAACTAGTCGGTCAAGCCCTTGATACAGATAGCTA
ATACCCGCATTCGGGGTGCGGGGAGCAGTTTGGCGTGATGTTTGACCATT
CATGGGGCGCGATTCATATCCTGCTTTCCGTTTGCCGTCGCCGACATCGA
GGCAGACGTGCCGCCAAACCCACACTCATTATGCCCACTACATTACAGAC
GGTACCATTATCAAAAATAACGAAAAAGCATTGGCATTGAGCTGCAGGGC
AGTAAGACCACTGGGCCGCTTGGGCGTGACGGGAACAGCAGACGGTATGT
ACTTTGGACATACAACTCACTCCTTCCTCTCTGCTCCATAATCTTTTCTC
CTCGATGATGCACCTGCAACACAATCTTCCCACACAAGCGCACACTAATC
ACAGTAGCGGTACTATCCTTTATGCTACTCGCAGTCTCTTCTTTGTTACC
CAGTTACTGCGCTGGCCACGGACACAACACAGGAGGCTCCCTGCTTCTTG
CCTCCCGCTGCCACCGCGCATTCCCCGCCACCCACTCAGCAAGCTGAATA
ACGTGCCTTGTCGTCCGAGCCACTCATGAAAAAAGGCTGCGGACATTCAT
ACGCAAAGGCACTTTGTTTTCATTTCTCCTAGGCCCTCCCCCCCCCCCCT
TTTTTTTGCGATCCACTAAAGGAAGGAAGTAATAACTTGAAATGGCCCGT
CCGGTCACAAACTCAAATCCTCCCCGACCTCAACCGCCCGCCGACCAAAC
ATTCATCATCGCAAGCTATGTATGCGCGATTTTAACCTTATTCGGATTCG
CGGGAGTCGCCGTCATTCTCTCCAGACGACACTATTCTACAGATATCGAT
ACCTTCCTCACAGCCCGTCGTTCACAACCCCTCCTTCGGGTGGCCTGGTC
CTTTTTCGCTTCTTCGATTGGGGCGTGGGCGATCTTTCTCCCTGCTTCGT
ATCCTGCATTTGGGGGATGGATTTCTATCATAACCTACGCAGTTTCGACG
GGCTTACCTCTTCTTTTAATTTCGGAATTTGGACGAAAAATCTTGAAGAG
GGCTCCGGACGTGTTAAGTCTCAACGATTTTGCTCATCGCATGTATGGAC
GCCCGGTCCAATTGTTCGTGATTATTTTATCGCTTGTCAACATGTCCGTG
GCATTAATATCGGAGTATACGGCTATCGGTGACTTGTTCGAGCATTACGT
GGGGGGACCCTCGCGCGTGTACATCATCCTCCTCATCGGGCTGGTAACAG
CAATCTACACAGCAAAAGGCGGGCTGCTGGTGTCCCTGCTCACAGATCAA
CTCCAAGCAGGCCTCGTACTCTTCCTTATCCTTATTGCCTCGACGTACCT
TGCCGTCAATTTTAGGGAGCCATTGCATCGACCCTTCCCAGAACGCCTGG
GAGTCAACTACTCAGGCCTCTCATCCATATTCTCCCTTCCTATCTCCCTC
CTCTCCTCGGCATGCTACCAGGAATCATTCTGGCAGCGTGTGTGGTCGGC
AGAGGATAAACGAAGCTTGAGATATGGTGCTGCATTGGGTTTCGCACTCA
CTACTGTTGTGATTGCCTTCTTCGGGACCGTGGGGTGGTTGGGTTTGTTG
GCGGAGTTGCCTCCCTTGGACGATCATAATAACTTAGCATTTTTTGTGCC
GTTCTCGGATGAGGCAACGGGAAGCCATCTCAGCTCTATGGTGATAAGAG
TGATGCTGGTGGTTTTAGCCACGACGATGAATGAGAGTGCGGTGGATTCG
TTGCAGAATGCGATTGTTTCGACGTTGTCGTCGTCGTTTTTGAAGAATAA
GCCAGTTAGCTGGTCGAGAGCATTGGTATTTGTAGTGAACGCACCTATCG
TCCTCATCGCCCTTCAAAGCTTCGCGCTACTCGACCTCTTTCTTGTTATG
AACATTTTGACGACCACCAGCACTTTTCCTCTACTCTCTGCCCTCTGGCT
CCCACGGGTGTCAGGCAGCACTGTCCTTCTCTCCTCAGCCGTGAGCTTGT
TTTGTACGTGCTTGTTAGGGGTACTTATACAGGGGCAGGGCATATTAAAA
GGATTAATATGGACTTTTACTAGTCAATTGAATCAATATGATTGGCGGAT
TTTTGTGGTGGCGGCCTTCACCTCCGTGGCGTGTACGTTTGGGTTGTGGT
TCGGTAGGGATACAGGAGGGAAGGGGTTCACTGTTCTGTCGATGGGTGCG
TTGGAGGGCTCGATAGGTAATCATTTGTCGCAGCCTTTTTTCGCTCGATG
CTGTCCGCGAGCCTTTTCGATATCATTATCCTTGTCGTCTTCTTTGTCCG
GCACTGCGGCTGCCGCTAGTGATGACGGTGTTGCGTGTGCTGGTGGAGAG
GAAGGGAGTGGGAGCAAGTGGTTGGGTGGGGATAACAAGTCTCCGCCCTT
CCCTTCCTCAACCTCGACGCAAAGGCCAAGACTCAATACGACCTGGTGCG
TCGGGAAAGCGGACAAGATGCCCGTGGAGAGTGGAAAAGAGGAAGTGGCA
TCGTTGGCGGGTTTAATACTTACGTCGCCTCTGGTGCAGGAGACCGTTGT
CGAGAGGGCGGCTAGCATGTTAGCTAATGAGGATGCTCATGACGATGGAG
AGATGTTTGTGAGATGATGAATGTAAGTGGGGTTTTAAGATGGTGACGTT
GGCAAGGGGACGGGGAAAGATGGGGTTGGACGAGGTGGATAGAGGAAGAG
GAGAGTTGGAAAATATTTATCAATCGATAGTGTTGATGATTGATATTATT
TTGCGGGGGGAAAGAGGAAGAGCTGATACAATAGCTGCTTGGACAAGCGC
CCACCAAAATTGTAATGGGAAGGAGAATGACTAATAAAGAGGAAATTACG
CCACAAATTGAAACGCTAGAATAAGAAAGAGAAACATATAAACTATGTGG
AATACATGACCGCATGTGTACCACTTCCAGCAGCGCATGAGGCACATGTG
TTGATTTAAAATAAGAAATCTTGAAAGTATAAATCCCGTGATAGTGTGAA
CTCACTTCTGTACACCGAAAGTGAGGAATCGTGAGGGGAATGACGAGTAA
ATGACCACAACACCAGCAGCAGTAGGTGATGATAGAGAAACAAAGAAACA
AAGTGAAGGTGTGCAATCACGAATCATTGATTTTCATTTTCATACATGCT
CTTTAATCATTCTTAACTTGCCCTCCTTTAACTACTTCAAGTATCACATT
TTACCGAAACCTTGTATATTGAAAAATAATGATCTCACGCGTGTGTGCTC
AATTCGAGATCAGCACCCCATCAGCAAACTTACCCGCTGGGTCCAGTGTT
TTGGCCGCAGCCACAAAGCGTGCATACACATCGTGGCCCACAGTATTCTG
AACATAACGGGCATCGAGCAAACTCCAAGTACCGCCCATAGGGGAGAAAA
TTGAGGCCTTGCCGTAGTGCACCCGAGCTTGGCATGTCTGCGATGCCATC
AGGTCCTTGATCACCTGCATCGATTGCGAGAAGCCCTTGCGGTTATACAC
ATCGTAATTGTCCATGTTTAAGTAAAAGCGTGTACCTCCGTGAGAAATGC
CTAGCAATCCTTCCTTACCAGGCCCTACGTAGCGCAAGCAAAAAGGCACT
CGGAAGTCGTCGCGATTCGTGACGTTTCGATCAAATACTTCAAACAAAGA
CTTGACGCAATCGTGAGCCTTGTCAATCGCCACGGCAAATTCGTACTGAT
CATATTTCCCATAGGCTGAGCGCAGAATATCAGTCTCGAGGATTTGTTGG
GCGGGGAGGGCATCCGAGAGCTTGTAGGTGCCCGGCAAAATGTTTGCAAT
GTGCCCTACCATCACATAGGTTGCCGCTGTGTGCGTGTTTGGGTCATTCA
ACATTTGCGCGGTCCGCGCATACAAAACACGTTGGAGCGAACTATTGGCA
ATGATCCGGTAGTACGTGTCTGACGCCGACTCGCCCACGTTCGGAAATGG
TTTGGCATCGAGCTTACGTATGTGAGACAGGTCGTCCACCGTCGTTTTGA
CAGCCCCTCTCAACGGAGGAGAGTACCAGTAATGCACGCGCTCAAATGCC
AAAGCATTGGTTTCAGCCTTTTTGAGTTCCGCCAGAATACCTTCATCGTC
AATATAATGGAGACCGCGCGACACAATTTCGTTGAGCTGCACCGCTAACG
TTAGTTCTATCACCACACCCAGAGTCCCAACACTTGTTTTAGCCGCCAAA
AACAGATCGCCATCCGCCTCCGTCAAGACTCGAATACTCCCATCCGCCAA
TACGATCTTTATAGCCTTAATTAGGCTCGACAAGCTGCCAAAAATGACTG
AGCTGCCATGGCTGCTGGTCGCCACGGCGCCCGCAATTGATTGATCAATA
TAGTACGGGGCCGTAGGCAGCGCGTACCCCCGATCCCTCAACCAATGAAT
CAGGTTTCGAGTCTTAACGCCAGCCTGCACAGTCACGGTTTTCTCGATCT
TATCAAAATTTAACACTCTATCCATCTGCATTGTGGTCATCATCAGGTCT
TCTCCGCAAGTCAGCGTGTTGAAGCTATGGCCCAGCCCCACGACCCGAAC
GCGGGAATGAGCCTTCACCAACTCTACCACCTGTTCCACTGTCCAGGGGT
AGGCAACAAAACCAGGACGGCAAACGATGGTGTCCTCCCAATTATGCCAC
TCTGAGGCCGCTTTGGCGCTGACAGAGCTGGTCTCTTTCTTAAAGGCGAC
GCCTTGGGGAGTGATGAAGGCCACGTGCGGGTCGTCAGTCACCGTGGCAG
TCAAAGGGGCGGAGGAAGCACCCAGGAATGCATCCGTAGAACGTAGCTGC
GCAGTGGCGTCAAGGAAAAATAGAGTGAGGGACAGGAGGAAAATGAAGAG
CGGCATAATTGGGCTGATCCGTATGTGGTGGTGGCGGCAACGGCTCGAAA
ACGGATGGGAATGGTCTACGGTGTTAATGTATGTGTTATGGTGCGGAGAG
GTTTAGAGGTGCAGCTAGAGAAGTGGGAACAATTGGACATGTGGTGCAGA
AAGAAATTGACCCAAAAACTGGTCCAGGTACCCAAGGATAAAGTGCAACG
GCAAGCACAGGCAGAGCACAGGTGGTGTGACGAAGGTTCGCCCAAACCCA
GAAAAAAAAGAAAAAAGAAAAACTGTTACATTCCCGCGGGGGGGGAGGGG
GGGGAAGGGCCATTTTCCAGGCCACCCCTAGCCATCTCGAGCTCCTAAGT
GACAAGGAAACAGCTGTTATGCTCGCTACATACTCTATCTTCTTCCCCAA
TATAGGATCCTATTCCTGACCCTATCTCATACCATCCACTTGCTCAAGCA
GCATATTGTCGGTCAAAAAAGGC
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protein sequence of NO20G01480.1

>NO20G01480.1-protein ID=NO20G01480.1-protein|Name=NO20G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=642bp
MARPVTNSNPPRPQPPADQTFIIASYVCAILTLFGFAGVAVILSRRHYST
DIDTFLTARRSQPLLRVAWSFFASSIGAWAIFLPASYPAFGGWISIITYA
VSTGLPLLLISEFGRKILKRAPDVLSLNDFAHRMYGRPVQLFVIILSLVN
MSVALISEYTAIGDLFEHYVGGPSRVYIILLIGLVTAIYTAKGGLLVSLL
TDQLQAGLVLFLILIASTYLAVNFREPLHRPFPERLGVNYSGLSSIFSLP
ISLLSSACYQESFWQRVWSAEDKRSLRYGAALGFALTTVVIAFFGTVGWL
GLLAELPPLDDHNNLAFFVPFSDEATGSHLSSMVIRVMLVVLATTMNESA
VDSLQNAIVSTLSSSFLKNKPVSWSRALVFVVNAPIVLIALQSFALLDLF
LVMNILTTTSTFPLLSALWLPRVSGSTVLLSSAVSLFCTCLLGVLIQGQG
ILKGLIWTFTSQLNQYDWRIFVVAAFTSVACTFGLWFGRDTGGKGFTVLS
MGALEGSIGNHLSQPFFARCCPRAFSISLSLSSSLSGTAAAASDDGVACA
GGEEGSGSKWLGGDNKSPPFPSSTSTQRPRLNTTWCVGKADKMPVESGKE
EVASLAGLILTSPLVQETVVERAASMLANEDAHDDGEMFVR*
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mRNA from alignment at chr20:457791..465697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01480.1 ID=NO20G01480.1|Name=NO20G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=7907bp|location=Sequence derived from alignment at chr20:457791..465697+ (Nannochloropsis oceanica)
CACGCGCGGGGTCTTTTAAAATTGTACTTTCTAATCATGTCTATTTTTCA TTTGTGCTTCTAATCATCTCCACACTTACTACATCGCTCCTTCAACCTCT TTCCCCCCCTCCTTCCCTTTTTCCTTATAACCCAATCCAATACGACCTTC CATTAGGGTTATGAATCGGAGTCACCACCGGCCCCGTCAATGCCCACTCA TACCACACTTTTCTCGAATTAACGTTCCTCCATATGTGTACCTCCACCTG CACCCCCTCCGGTGCATACGCAGGTGTCCTCAAGGGGAAATAAAGGGGAA ACCACGAGAACATACCCGTAGAGAAAGTCTGCGGCACAATTGAAATGAAG ATATTGTCATACAACCTCGCGTTAAAATAACCAGCAAATCCATGTATGGT TGCCGCAGTTGTCGCCGGAAACCTCAGGCAAGCATAACGCGTGTTATCGA TTTTTTCCGCGCCATTTGGGTGTGAGAAAGTAAAACAGGGCTGGGCTTCG GAGAGCTGACAAAAATTGTGGAGCTTCACGACGTAGGCAGTTTCCATGTG CTTGACGTCTTTGTAGCTGTGGACCTCATTCCAGAGCTTAGAGGAGGAGA TGGGGGCAAGATAAGATGTGTACTCACACGGAATTGATATCCCCCCTTCC TTGAGAAAGGCCTGTGCCTTATCCAAGCACTCTGGAGAGAGCTCGTTATC ACCGAAAGAGCCTAGTAGCTCACTGACCAAAATATCGGCCTTTTCAGGGG CGGCCCATACTCGCATATCAGTGGCAACAACTGTCACATTGCTCCACTCC TCACATCTCACCATATTTCTCAACGTCACCACGGCGTTCGGGTTCTTTTC AACTGCATAGACACGTACCTCCCGTTCTGCCCTGGCAGCAGCGGCAAGGG ATGCTCGGACCAAGGGGCCACGACCAGCGCCGACAACCATGACGACGGAG GTGATGGAGGAAGGGGTGGACGAGAGGGCGGCAGCCACGGCATCCTCGTA ACGCGCGTATTTGACGGGATCTTTTTCGAAGGTCTCGTAGGTTTGAGATT CCAGGTTATCCATGAGGGGTTGTAAGGGGGCTTGGAGATAGTCGTAATAA GGAGATTCAAAGCGATCTTGCTCGGGAACGGGGAAAAGTTTTAGGCGCAG GTGCTCTAGGTACTGTAGATAGATTTCATACCCTCCTGCATGCCTGGCCC TCCCATTCAGAATTATTTGAATTTTTAATACGTACATCTCCAGCACAAAA TACTGGTGGGGCTTGCTCAGCACGGGGAAGCCCTTTTTGTTGGTGAGGAA GATTGATGTGGGGAAAATGATGGCTTTGACGGGCTCTCCGCGCCAACGTT GCAGAGTCTGGCGAGGGGGGAGGTCTTCGGTAACTTCCAGGGCGACGCCT AGGGAGGCATTGAATTCGCAGAGGGTACGAAGGCGGTTCCACGTCTCCCA GGGATCTTCTTTGGCGGAAGGGACCATGTTCATCAAGTAGGAGGACGAGA GAGAAGAGATGGGTTGTTGCTGTTTTTGTTTTATGCTGCTCGTTTGATTA GCGCCTGCTGCAGCGGCAGTATTTGATCCGTTGGTTGCTGTGGGCGTTAC TGTGCTTCCCAATTGATCGCCTTCGTTACTAACCCTGTGGTTGCATTCCT GCTGCCGATGGTGTTGCTGCTGTTGCTGTTGCTGCTGCTCTTCCTTGTCG TCGTCCACATCGTCCTCGGCCTTGCATCGCACCAAGGGAATCCGCACCCA CAGCTGCAGCACCGTCGGCTGTGATACTGCTTGGTTGATAAGCCGAGCAT AGTTGGCACAGTTTGGTCGGGGCATCGGCATCAGGACAGCAGGCACGGCC AAATGCGAGGCCCACGCCAACTCTTGCTTCAGCGCTGTCTCTGCTGCCAA ACGCACGTCCACATCCGGGTTTCCTGGGTCAAGCCATTCTGACACCTTGC CAACGATACACGTGGTCCAAGTTCGACTGTCTACTTCCATGTCACTCCTT GTCAGGGTACCGTGGCGGGCTTCGCTTACCCCTACGTTGTCCCGCTCGAA GCGTGGGTGTACGAGGGGGATGGCCACGAAATCGAACTTGGCTATGCGTG CCTCTTCTAATAGATCCTTCAGGTCCGAGACCGTGTTAGTCTCCCAGCCT GCCGTCAATTTTTCCAGCACCATCTTGCCTTGTAGGAGTATGGGAGGAAA GAGACTCGCTGTGGTATGTGATGATGGGGTAGTATGGGGTGGTTGGGAGG GGAAAGGAGGTCGCATGAGTGGCTGGAAGACGGGCGGCGCAATTAAGTGA GAGCCCGACATGCAAAAACTAGTCGGTCAAGCCCTTGATACAGATAGCTA ATACCCGCATTCGGGGTGCGGGGAGCAGTTTGGCGTGATGTTTGACCATT CATGGGGCGCGATTCATATCCTGCTTTCCGTTTGCCGTCGCCGACATCGA GGCAGACGTGCCGCCAAACCCACACTCATTATGCCCACTACATTACAGAC GGTACCATTATCAAAAATAACGAAAAAGCATTGGCATTGAGCTGCAGGGC AGTAAGACCACTGGGCCGCTTGGGCGTGACGGGAACAGCAGACGGTATGT ACTTTGGACATACAACTCACTCCTTCCTCTCTGCTCCATAATCTTTTCTC CTCGATGATGCACCTGCAACACAATCTTCCCACACAAGCGCACACTAATC ACAGTAGCGGTACTATCCTTTATGCTACTCGCAGTCTCTTCTTTGTTACC CAGTTACTGCGCTGGCCACGGACACAACACAGGAGGCTCCCTGCTTCTTG CCTCCCGCTGCCACCGCGCATTCCCCGCCACCCACTCAGCAAGCTGAATA ACGTGCCTTGTCGTCCGAGCCACTCATGAAAAAAGGCTGCGGACATTCAT ACGCAAAGGCACTTTGTTTTCATTTCTCCTAGGCCCTCCCCCCCCCCCCT TTTTTTTGCGATCCACTAAAGGAAGGAAGTAATAACTTGAAATGGCCCGT CCGGTCACAAACTCAAATCCTCCCCGACCTCAACCGCCCGCCGACCAAAC ATTCATCATCGCAAGCTATGTATGCGCGATTTTAACCTTATTCGGATTCG CGGGAGTCGCCGTCATTCTCTCCAGACGACACTATTCTACAGATATCGAT ACCTTCCTCACAGCCCGTCGTTCACAACCCCTCCTTCGGGTGGCCTGGTC CTTTTTCGCTTCTTCGATTGGGGCGTGGGCGATCTTTCTCCCTGCTTCGT ATCCTGCATTTGGGGGATGGATTTCTATCATAACCTACGCAGTTTCGACG GGCTTACCTCTTCTTTTAATTTCGGAATTTGGACGAAAAATCTTGAAGAG GGCTCCGGACGTGTTAAGTCTCAACGATTTTGCTCATCGCATGTATGGAC GCCCGGTCCAATTGTTCGTGATTATTTTATCGCTTGTCAACATGTCCGTG GCATTAATATCGGAGTATACGGCTATCGGTGACTTGTTCGAGCATTACGT GGGGGGACCCTCGCGCGTGTACATCATCCTCCTCATCGGGCTGGTAACAG CAATCTACACAGCAAAAGGCGGGCTGCTGGTGTCCCTGCTCACAGATCAA CTCCAAGCAGGCCTCGTACTCTTCCTTATCCTTATTGCCTCGACGTACCT TGCCGTCAATTTTAGGGAGCCATTGCATCGACCCTTCCCAGAACGCCTGG GAGTCAACTACTCAGGCCTCTCATCCATATTCTCCCTTCCTATCTCCCTC CTCTCCTCGGCATGCTACCAGGAATCATTCTGGCAGCGTGTGTGGTCGGC AGAGGATAAACGAAGCTTGAGATATGGTGCTGCATTGGGTTTCGCACTCA CTACTGTTGTGATTGCCTTCTTCGGGACCGTGGGGTGGTTGGGTTTGTTG GCGGAGTTGCCTCCCTTGGACGATCATAATAACTTAGCATTTTTTGTGCC GTTCTCGGATGAGGCAACGGGAAGCCATCTCAGCTCTATGGTGATAAGAG TGATGCTGGTGGTTTTAGCCACGACGATGAATGAGAGTGCGGTGGATTCG TTGCAGAATGCGATTGTTTCGACGTTGTCGTCGTCGTTTTTGAAGAATAA GCCAGTTAGCTGGTCGAGAGCATTGGTATTTGTAGTGAACGCACCTGTAA GTTATACAAAAATTCATAAGTGGGGTTGGGAATGGATTAGGAAGGTTAAG GGTCGTCTCTCACCCATGTTCCCTCCCTTGCTCCTCCTTTCCCTCAATCT CTCCCTCACACCCTTTAGATCGTCCTCATCGCCCTTCAAAGCTTCGCGCT ACTCGACCTCTTTCTTGTTATGAACATTTTGACGACCACCAGGTAGGTGT TTGACGTAGATTAATGTGCCAAAAAAACTCACACATTTTTTCGTTTCAGC CTGTAATTTAAATCTCCGTGCTGACATACTGTGCGACGTCCGTACACCTA TTCATCCCTTCTCAGCAGTATTTCCCCCTCGTTTGCTCCCTCCCTCTCTT GCAGCACTTTTCCTCTACTCTCTGCCCTCTGGCTCCCACGGGTGTCAGGC AGCACTGTCCTTCTCTCCTCAGCCGTGAGCTTGTTTTGTACGTGCTTGTT AGGGGTACTTATACAGGGGCAGGGCATATTAAAAGGATTAATATGGACTT TTACTAGTCAATTGAATCAATATGATTGGCGGATTTTTGTGGTGGCGGCC TTCACCTCCGTGGCGTGTACGTTTGGGTTGTGGTTCGGTAGGGATACAGG AGGGAAGGGGTTCACTGTTCTGTCGATGGGTGCGTTGGAGGGCTCGATAG GTAATCATTTGTCGCAGCCTTTTTTCGCTCGATGCTGTCCGCGAGCCTTT TCGATATCATTATCCTTGTCGTCTTCTTTGTCCGGCACTGCGGCTGCCGC TAGTGATGACGGTGTTGCGTGTGCTGGTGGAGAGGAAGGGAGTGGGAGCA AGTGGTTGGGTGGGGATAACAAGTCTCCGCCCTTCCCTTCCTCAACCTCG ACGCAAAGGCCAAGACTCAATACGACCTGGTGCGTCGGGAAAGCGGACAA GATGCCCGTGGAGAGTGGAAAAGAGGAAGTGGCATCGTTGGCGGGTTTAA TACTTACGTCGCCTCTGGTGCAGGAGACCGTTGTCGAGAGGGCGGCTAGC ATGTTAGCTAATGAGGATGCTCATGACGATGGAGAGATGTTTGTGAGATG ATGAATGTAAGTGGGGTTTTAAGATGGTGACGTTGGCAAGGGGACGGGGA AAGATGGGGTTGGACGAGGTGGATAGAGGAAGAGGAGAGTTGGAAAATAT TTATCAATCGATAGTGTTGATGATTGATATTATTTTGCGGGGGGAAAGAG GAAGAGCTGATACAATAGCTGCTTGGACAAGCGCCCACCAAAATTGTAAT GGGAAGGAGAATGACTAATAAAGAGGAAATTACGCCACAAATTGAAACGC TAGAATAAGAAAGAGAAACATATAAACTATGTGGAATACATGACCGCATG TGTACCACTTCCAGCAGCGCATGAGGCACATGTGTTGATTTAAAATAAGA AATCTTGAAAGTATAAATCCCGTGATAGTGTGAACTCACTTCTGTACACC GAAAGTGAGGAATCGTGAGGGGAATGACGAGTAAATGACCACAACACCAG CAGCAGTAGGTGATGATAGAGAAACAAAGAAACAAAGTGAAGGTGTGCAA TCACGAATCATTGATTTTCATTTTCATACATGCTCTTTAATCATTCTTAA CTTGCCCTCCTTTAACTACTTCAAGTATCACATTTTACCGAAACCTTGTA TATTGAAAAATAATGATCTCACGCGTGTGTGCTCAATTCGAGATCAGCAC CCCATCAGCAAACTTACCCGCTGGGTCCAGTGTTTTGGCCGCAGCCACAA AGCGTGCATACACATCGTGGCCCACAGTATTCTGAACATAACGGGCATCG AGCAAACTCCAAGTACCGCCCATAGGGGAGAAAATTGAGGCCTTGCCGTA GTGCACCCGAGCTTGGCATGTCTGCGATGCCATCAGGTCCTTGATCACCT GCATCGATTGCGAGAAGCCCTTGCGGTTATACACATCGTAATTGTCCATG TTTAAGTAAAAGCGTGTACCTCCGTGAGAAATGCCTAGCAATCCTTCCTT ACCAGGCCCTACGTAGCGCAAGCAAAAAGGCACTCGGAAGTCGTCGCGAT TCGTGACGTTTCGATCAAATACTTCAAACAAAGACTTGACGCAATCGTGA GCCTTGTCAATCGCCACGGCAAATTCGTACTGATCATATTTCCCATAGGC TGAGCGCAGAATATCAGTCTCGAGGATTTGTTGGGCGGGGAGGGCATCCG AGAGCTTGTAGGTGCCCGGCAAAATGTTTGCAATGTGCCCTACCATCACA TAGGTTGCCGCTGTGTGCGTGTTTGGGTCATTCAACATTTGCGCGGTCCG CGCATACAAAACACGTTGGAGCGAACTATTGGCAATGATCCGGTAGTACG TGTCTGACGCCGACTCGCCCACGTTCGGAAATGGTTTGGCATCGAGCTTA CGTATGTGAGACAGGTCGTCCACCGTCGTTTTGACAGCCCCTCTCAACGG AGGAGAGTACCAGTAATGCACGCGCTCAAATGCCAAAGCATTGGTTTCAG CCTTTTTGAGTTCCGCCAGAATACCTTCATCGTCAATATAATGGAGACCG CGCGACACAATTTCGTTGAGCTGCACCGCTAACGTTAGTTCTATCACCAC ACCCAGAGTCCCAACACTTGTTTTAGCCGCCAAAAACAGATCGCCATCCG CCTCCGTCAAGACTCGAATACTCCCATCCGCCAATACGATCTTTATAGCC TTAATTAGGCTCGACAAGCTGCCAAAAATGACTGAGCTGCCATGGCTGCT GGTCGCCACGGCGCCCGCAATTGATTGATCAATATAGTACGGGGCCGTAG GCAGCGCGTACCCCCGATCCCTCAACCAATGAATCAGGTTTCGAGTCTTA ACGCCAGCCTGCACAGTCACGGTTTTCTCGATCTTATCAAAATTTAACAC TCTATCCATCTGCATTGTGGTCATCATCAGGTCTTCTCCGCAAGTCAGCG TGTTGAAGCTATGGCCCAGCCCCACGACCCGAACGCGGGAATGAGCCTTC ACCAACTCTACCACCTGTTCCACTGTCCAGGGGTAGGCAACAAAACCAGG ACGGCAAACGATGGTGTCCTCCCAATTATGCCACTCTGAGGCCGCTTTGG CGCTGACAGAGCTGGTCTCTTTCTTAAAGGCGACGCCTTGGGGAGTGATG AAGGCCACGTGCGGGTCGTCAGTCACCGTGGCAGTCAAAGGGGCGGAGGA AGCACCCAGGAATGCATCCGTAGAACGTAGCTGCGCAGTGGCGTCAAGGA AAAATAGAGTGAGGGACAGGAGGAAAATGAAGAGCGGCATAATTGGGCTG ATCCGTATGTGGTGGTGGCGGCAACGGCTCGAAAACGGATGGGAATGGTC TACGGTGTTAATGTATGTGTTATGGTGCGGAGAGGTTTAGAGGTGCAGCT AGAGAAGTGGGAACAATTGGACATGTGGTGCAGAAAGAAATTGACCCAAA AACTGGTCCAGGTACCCAAGGATAAAGTGCAACGGCAAGCACAGGCAGAG CACAGGTGGTGTGACGAAGGTTCGCCCAAACCCAGAAAAAAAAGAAAAAA GAAAAACTGTTACATTCCCGCGGGGGGGGAGGGGGGGGAAGGGCCATTTT CCAGGCCACCCCTAGCCATCTCGAGCTCCTAAGTGACAAGGAAACAGCTG TTATGCTCGCTACATACTCTATCTTCTTCCCCAATATAGGATCCTATTCC TGACCCTATCTCATACCATCCACTTGCTCAAGCAGCATATTGTCGGTCAA AAAAGGC
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Coding sequence (CDS) from alignment at chr20:457791..465697+

>NO20G01480.1 ID=NO20G01480.1|Name=NO20G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at chr20:457791..465697+ (Nannochloropsis oceanica)
ATGGCCCGTCCGGTCACAAACTCAAATCCTCCCCGACCTCAACCGCCCGC
CGACCAAACATTCATCATCGCAAGCTATGTATGCGCGATTTTAACCTTAT
TCGGATTCGCGGGAGTCGCCGTCATTCTCTCCAGACGACACTATTCTACA
GATATCGATACCTTCCTCACAGCCCGTCGTTCACAACCCCTCCTTCGGGT
GGCCTGGTCCTTTTTCGCTTCTTCGATTGGGGCGTGGGCGATCTTTCTCC
CTGCTTCGTATCCTGCATTTGGGGGATGGATTTCTATCATAACCTACGCA
GTTTCGACGGGCTTACCTCTTCTTTTAATTTCGGAATTTGGACGAAAAAT
CTTGAAGAGGGCTCCGGACGTGTTAAGTCTCAACGATTTTGCTCATCGCA
TGTATGGACGCCCGGTCCAATTGTTCGTGATTATTTTATCGCTTGTCAAC
ATGTCCGTGGCATTAATATCGGAGTATACGGCTATCGGTGACTTGTTCGA
GCATTACGTGGGGGGACCCTCGCGCGTGTACATCATCCTCCTCATCGGGC
TGGTAACAGCAATCTACACAGCAAAAGGCGGGCTGCTGGTGTCCCTGCTC
ACAGATCAACTCCAAGCAGGCCTCGTACTCTTCCTTATCCTTATTGCCTC
GACGTACCTTGCCGTCAATTTTAGGGAGCCATTGCATCGACCCTTCCCAG
AACGCCTGGGAGTCAACTACTCAGGCCTCTCATCCATATTCTCCCTTCCT
ATCTCCCTCCTCTCCTCGGCATGCTACCAGGAATCATTCTGGCAGCGTGT
GTGGTCGGCAGAGGATAAACGAAGCTTGAGATATGGTGCTGCATTGGGTT
TCGCACTCACTACTGTTGTGATTGCCTTCTTCGGGACCGTGGGGTGGTTG
GGTTTGTTGGCGGAGTTGCCTCCCTTGGACGATCATAATAACTTAGCATT
TTTTGTGCCGTTCTCGGATGAGGCAACGGGAAGCCATCTCAGCTCTATGG
TGATAAGAGTGATGCTGGTGGTTTTAGCCACGACGATGAATGAGAGTGCG
GTGGATTCGTTGCAGAATGCGATTGTTTCGACGTTGTCGTCGTCGTTTTT
GAAGAATAAGCCAGTTAGCTGGTCGAGAGCATTGGTATTTGTAGTGAACG
CACCTATCGTCCTCATCGCCCTTCAAAGCTTCGCGCTACTCGACCTCTTT
CTTGTTATGAACATTTTGACGACCACCAGCACTTTTCCTCTACTCTCTGC
CCTCTGGCTCCCACGGGTGTCAGGCAGCACTGTCCTTCTCTCCTCAGCCG
TGAGCTTGTTTTGTACGTGCTTGTTAGGGGTACTTATACAGGGGCAGGGC
ATATTAAAAGGATTAATATGGACTTTTACTAGTCAATTGAATCAATATGA
TTGGCGGATTTTTGTGGTGGCGGCCTTCACCTCCGTGGCGTGTACGTTTG
GGTTGTGGTTCGGTAGGGATACAGGAGGGAAGGGGTTCACTGTTCTGTCG
ATGGGTGCGTTGGAGGGCTCGATAGGTAATCATTTGTCGCAGCCTTTTTT
CGCTCGATGCTGTCCGCGAGCCTTTTCGATATCATTATCCTTGTCGTCTT
CTTTGTCCGGCACTGCGGCTGCCGCTAGTGATGACGGTGTTGCGTGTGCT
GGTGGAGAGGAAGGGAGTGGGAGCAAGTGGTTGGGTGGGGATAACAAGTC
TCCGCCCTTCCCTTCCTCAACCTCGACGCAAAGGCCAAGACTCAATACGA
CCTGGTGCGTCGGGAAAGCGGACAAGATGCCCGTGGAGAGTGGAAAAGAG
GAAGTGGCATCGTTGGCGGGTTTAATACTTACGTCGCCTCTGGTGCAGGA
GACCGTTGTCGAGAGGGCGGCTAGCATGTTAGCTAATGAGGATGCTCATG
ACGATGGAGAGATGTTTGTGAGATGA
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Synonyms
Publications