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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr20 | genome | chr20:455001..457785 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G01470.1 vs.
Match: XP_004341026.1 (diphosphonucleotide phosphatase 1, putative [Acanthamoeba castellanii str. Neff]; ELR18962.1 diphosphonucleotide phosphatase 1, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 361.7 bits (927), Expect = 5.900e-96 Identity = 233/657 (35.46%), Postives = 330/657 (50.23%), Query Frame = 0
Query: 8 GKFTSLVLLLFSSSSIFSHTVAHNMTRMPSEVLDAAAIARITTELDHTISLDAAPKALPNSGSWVTVTWEGVRGPSATDFIAAYAVPFEKDVELEPSRLAPVKYQYAAFADPKHLESGSGQINFRLVELSGDYRFGFFRGNVTQGVLAAWSSDVVTVGERKGKKEGEIILRPLQLHLALTGQPSEMRVTWKTSGLEAPAANTSLQVQYYAQGSGSSEDNTSWDTSSATSMTFDKEDLCGEPAESVGFLPPGYVHTAVMKGLAPATTYEYKVGDATQDIWSTTYSFRTGPAVAPAPVVMASAAATARGNGRAFSSEFDDAGHSVRIAMIADMSSAEEDGSLQAGWFANDFSSLDTSSLLRQQVIEGEIDLIMCIGDLSYSSGYLSRWDAWLDQVEQVAASVPFMTTPGNHERDDPFASSFYTTATTYAANEHAGFSIYNTNDGGGECGVPYQTYFPMPGPGEDSRGDQPWYSFNYGPVHVTVASTEHDFREGSRQYAWLAQDLGQVDRIVTPWLVFVGHRPFYVDSTEDPEPANPLSPSEQGAARLLRTHLEPLLLQHHVDLCLAGHHHSYQRTCKVADGECVAEAAYKGAYMAPVHAIVGMAGRRLSVNFKTERPVYFESVERESWGTMVLEATPWRLVMTFRDSITARIMDQTILH 665
G +L+LL +S+ SH A P L +I IS+ A P L SG WV V+W GV PSA D+I Y+ P V + P+KY++A +L +G+G + FRL + DY F FFR +T+ L A S+ V V + P+Q L LTG+ +EMRV W T P QV++ G+S N +ATS T+ KE +CG PA + G+ PG +H+AV+ L P T Y Y GD T +S SF + P + V + + DM +D S + + ++ +S++T++L+ + + +DL++ IGD++Y+ GY ++WD + DQV ++ +P+MT GNHERD P + S YN +D GGECGV Y+ +PMP P DQPWYSF+YG +H T STEHDF GS Q+ WL +DL +VDR+ TPW+VF GHRP Y+DS D A ++Q AR LR ++E LL ++ VDL L GHHHSYQR+C V G C+ AP H ++GMAG L+ N + E+P + V + G L T RL M F + R+ D L+
Sbjct: 13 GLAVTLLLLAHQASAHGSHAAA------PKSKL------QIKAHKVEAISIGATPATLQRSGEWVVVSWRGVDSPSAGDWIGVYS-PANASV----TTSVPIKYKFAD-ESTNYLSTGAGSVRFRLTNMRADYAFHFFRHGITRPTLVATSNAVTFVNYNE----------PMQGRLMLTGRQNEMRVMWTTRDAVRP------QVKF-----GTSPGNYDQSVGAATS-TYRKEHMCGAPANAEGWRDPGLLHSAVLSNLRPDTRYYYVYGDPTFG-FSAEASFVSEPHPGQSDRV-------------------------IHLFAFGDMGKTTQDNSTE--HWDSELASINTTTLIAKDLDARPMDLLLHIGDIAYAVGYGAQWDEFHDQVSAISTRLPYMTCIGNHERDFPNSG-----------------SRYNGSDSGGECGVAYEARYPMPTPAR----DQPWYSFDYGFIHFTFMSTEHDFSIGSVQWKWLEEDLKKVDRVKTPWVVFSGHRPMYIDSQGDIGDA-----ADQPVARELRANVEDLLFKYQVDLALWGHHHSYQRSCPVYKGTCIPSG------RAPTHVVIGMAGFSLTTNLELEKPTWARVVNDQEHGYTRLAVTRSRLEMEFISDVDTRVKDHFALY 569
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G01470.1 ID=NO20G01470.1|Name=NO20G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2571bp
ACAGCACTTGCGGTCGGTCTGTGAGCAAACGAGGGAGCGGAGCCGACTGA
GTGGCGTCGTCATCATGTGGTGCCGACGCTTCTGTGGCAAGTTTACCAGT
TTGGTCCTCCTGCTTTTCAGCTCTTCCAGCATATTCAGTCATACAGTGGC
ACACAACATGACCCGCATGCCCTCCGAGGTACTCGATGCAGCTGCCATTG
CGAGGATTACGACGGAGCTTGACCACACTATTTCGCTTGACGCCGCGCCG
AAGGCGTTGCCCAACTCCGGCTCCTGGGTCACCGTGACATGGGAGGGCGT
AAGGGGCCCCAGTGCCACAGATTTCATCGCTGCATACGCAGTTCCCTTCG
AGAAGGACGTTGAGCTGGAGCCGTCGCGTCTCGCTCCAGTCAAGTATCAG
TACGCGGCCTTTGCCGACCCCAAGCACCTAGAAAGTGGGAGCGGCCAAAT
CAACTTCAGGCTGGTGGAGCTTAGCGGAGATTATCGTTTTGGCTTTTTCA
GAGGCAATGTCACCCAGGGAGTGCTGGCGGCCTGGTCTAGCGACGTTGTT
ACTGTGGGCGAGCGCAAGGGCAAGAAAGAGGGTGAAATCATTCTACGGCC
ACTGCAATTGCATTTAGCTCTGACGGGCCAGCCATCAGAGATGCGCGTGA
CGTGGAAGACGAGTGGCTTAGAGGCACCTGCAGCCAACACGTCATTGCAA
GTGCAGTATTACGCCCAGGGCAGCGGCTCATCCGAAGACAACACCAGCTG
GGATACCAGCTCGGCGACGTCCATGACATTTGACAAGGAAGACCTGTGTG
GCGAGCCGGCGGAGAGCGTGGGATTCCTGCCGCCGGGTTACGTGCACACG
GCTGTCATGAAGGGGCTGGCACCGGCCACGACGTACGAGTACAAGGTGGG
CGACGCAACACAAGACATTTGGAGCACCACTTATAGCTTTCGGACGGGTC
CTGCCGTGGCGCCAGCGCCCGTGGTCATGGCTTCTGCAGCTGCGACTGCT
CGTGGGAACGGCCGAGCATTTTCTAGTGAATTCGATGACGCGGGACACTC
GGTGCGAATCGCAATGATTGCGGACATGTCCAGCGCCGAGGAAGACGGCA
GTTTGCAGGCTGGATGGTTCGCGAACGACTTCAGCTCTTTGGACACCAGC
TCCTTGTTGCGGCAACAGGTAATAGAGGGGGAGATTGACTTGATTATGTG
TATTGGCGATCTATCCTACAGCTCGGGTTATCTCTCGCGATGGGATGCCT
GGCTCGATCAAGTGGAGCAGGTTGCAGCTAGTGTGCCTTTCATGACCACG
CCGGGCAACCACGAACGTGACGACCCTTTCGCCTCGTCCTTTTACACGAC
CGCTACCACCTATGCTGCCAATGAACACGCCGGGTTCTCTATTTATAACA
CAAATGATGGTGGTGGCGAGTGTGGCGTTCCGTATCAGACGTATTTCCCC
ATGCCCGGTCCTGGCGAGGACTCCCGTGGTGATCAGCCGTGGTACTCGTT
CAATTATGGGCCTGTGCATGTGACTGTGGCTTCCACAGAGCACGACTTTC
GTGAAGGCTCTCGACAGTATGCATGGCTAGCACAGGATCTGGGCCAAGTG
GATCGTATAGTGACACCCTGGTTGGTATTTGTGGGCCATCGTCCATTCTA
TGTGGACAGCACGGAAGACCCGGAGCCTGCCAACCCGCTAAGCCCCTCCG
AGCAGGGTGCAGCGCGGTTGCTGCGCACACATCTGGAGCCTTTGCTTTTG
CAGCACCATGTGGATTTGTGTTTGGCTGGTCATCATCACAGTTATCAACG
CACTTGCAAGGTCGCGGATGGGGAGTGCGTGGCCGAGGCAGCCTACAAGG
GTGCCTACATGGCGCCCGTGCACGCGATTGTGGGCATGGCCGGACGACGA
CTGTCGGTAAACTTTAAGACGGAAAGACCGGTGTACTTCGAGTCTGTCGA
GAGGGAGTCCTGGGGCACCATGGTGTTGGAAGCGACACCCTGGCGCTTGG
TTATGACCTTCCGGGATTCCATCACGGCTCGAATCATGGATCAGACCATT
CTACATGTGCCGCTCGAATATCTTGTCCAGCCAGAGAAGAATGATGACGA
GGCCTATCATAAGAATTACATGCCGCGTGGTGTTCGCTACCGGTCCGAAA
ACATCAAATATTTGCAGCTCGTTTACTGGTTTCTAGCGCTGGTGGTTATC
CTGGGATTTGCCTTGACGTTGGGCAATATCTTAAGCGGGGAGCGACTCCC
GGTGTGGTGGTTGCGGCTCATGACAAATGTTGCGGGAAGCGGTAATGATG
GTGTTGGGGGGAATCGCTCTTTTCGCGATAAGCACGACATGTCTCCGGCC
CCACCTTGTCTTGGCGAGCAGACTCCACTGACTGGCTCGTCTTTGGATGG
GAGTGGGAATGCGAGCAAACGGTATCGCACGGGGTCCATTCACTATGCGG
ATGCGGTGTAGACGTTATGTCAATTTGTGAAATGCACGTGTAAAGAATGC
GAATACGGATGTATTGAATGAAAATTGAAAATATGAGCAAAAACGCCTCA
AAATCTACTCCGAAGCTACCA back to topprotein sequence of NO20G01470.1 >NO20G01470.1-protein ID=NO20G01470.1-protein|Name=NO20G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=799bp
MWCRRFCGKFTSLVLLLFSSSSIFSHTVAHNMTRMPSEVLDAAAIARITT
ELDHTISLDAAPKALPNSGSWVTVTWEGVRGPSATDFIAAYAVPFEKDVE
LEPSRLAPVKYQYAAFADPKHLESGSGQINFRLVELSGDYRFGFFRGNVT
QGVLAAWSSDVVTVGERKGKKEGEIILRPLQLHLALTGQPSEMRVTWKTS
GLEAPAANTSLQVQYYAQGSGSSEDNTSWDTSSATSMTFDKEDLCGEPAE
SVGFLPPGYVHTAVMKGLAPATTYEYKVGDATQDIWSTTYSFRTGPAVAP
APVVMASAAATARGNGRAFSSEFDDAGHSVRIAMIADMSSAEEDGSLQAG
WFANDFSSLDTSSLLRQQVIEGEIDLIMCIGDLSYSSGYLSRWDAWLDQV
EQVAASVPFMTTPGNHERDDPFASSFYTTATTYAANEHAGFSIYNTNDGG
GECGVPYQTYFPMPGPGEDSRGDQPWYSFNYGPVHVTVASTEHDFREGSR
QYAWLAQDLGQVDRIVTPWLVFVGHRPFYVDSTEDPEPANPLSPSEQGAA
RLLRTHLEPLLLQHHVDLCLAGHHHSYQRTCKVADGECVAEAAYKGAYMA
PVHAIVGMAGRRLSVNFKTERPVYFESVERESWGTMVLEATPWRLVMTFR
DSITARIMDQTILHVPLEYLVQPEKNDDEAYHKNYMPRGVRYRSENIKYL
QLVYWFLALVVILGFALTLGNILSGERLPVWWLRLMTNVAGSGNDGVGGN
RSFRDKHDMSPAPPCLGEQTPLTGSSLDGSGNASKRYRTGSIHYADAV* back to topmRNA from alignment at chr20:455001..457785+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G01470.1 ID=NO20G01470.1|Name=NO20G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2785bp|location=Sequence derived from alignment at chr20:455001..457785+ (Nannochloropsis oceanica)
ACAGCACTTGCGGTCGGTCTGTGAGCAAACGAGGGAGCGGAGCCGACTGA
GTGGCGTCGTCATCATGTGGTGCCGACGCTTCTGTGGCAAGTTTACCAGT
TTGGTCCTCCTGCTTTTCAGCTCTTCCAGCATATTCAGTCATACAGTGGC
ACACAACATGACCCGCATGCCCTCCGAGGTACTCGATGCAGCTGCCATTG
CGAGGATTACGGTACGTGCAGTGGAGGGATTCGAAAAGCCCATGATTTGG
GATGGGCCGTGTGTTCGTGCTCGAGGCGGGACGATCGCCCACATCCCGCA
CGGCGACTAGCATGCATCCCTACATTCATTACCTTGCTGGGCTGGATGAG
GGAGAGGCATGACCTCCAAAAGTCCTGTTTCACTTGTATCTTCTTCGCGA
CTCCCTCCACCCTACATAATCACAGACGGAGCTTGACCACACTATTTCGC
TTGACGCCGCGCCGAAGGCGTTGCCCAACTCCGGCTCCTGGGTCACCGTG
ACATGGGAGGGCGTAAGGGGCCCCAGTGCCACAGATTTCATCGCTGCATA
CGCAGTTCCCTTCGAGAAGGACGTTGAGCTGGAGCCGTCGCGTCTCGCTC
CAGTCAAGTATCAGTACGCGGCCTTTGCCGACCCCAAGCACCTAGAAAGT
GGGAGCGGCCAAATCAACTTCAGGCTGGTGGAGCTTAGCGGAGATTATCG
TTTTGGCTTTTTCAGAGGCAATGTCACCCAGGGAGTGCTGGCGGCCTGGT
CTAGCGACGTTGTTACTGTGGGCGAGCGCAAGGGCAAGAAAGAGGGTGAA
ATCATTCTACGGCCACTGCAATTGCATTTAGCTCTGACGGGCCAGCCATC
AGAGATGCGCGTGACGTGGAAGACGAGTGGCTTAGAGGCACCTGCAGCCA
ACACGTCATTGCAAGTGCAGTATTACGCCCAGGGCAGCGGCTCATCCGAA
GACAACACCAGCTGGGATACCAGCTCGGCGACGTCCATGACATTTGACAA
GGAAGACCTGTGTGGCGAGCCGGCGGAGAGCGTGGGATTCCTGCCGCCGG
GTTACGTGCACACGGCTGTCATGAAGGGGCTGGCACCGGCCACGACGTAC
GAGTACAAGGTGGGCGACGCAACACAAGACATTTGGAGCACCACTTATAG
CTTTCGGACGGGTCCTGCCGTGGCGCCAGCGCCCGTGGTCATGGCTTCTG
CAGCTGCGACTGCTCGTGGGAACGGCCGAGCATTTTCTAGTGAATTCGAT
GACGCGGGACACTCGGTGCGAATCGCAATGATTGCGGACATGTCCAGCGC
CGAGGAAGACGGCAGTTTGCAGGCTGGATGGTTCGCGAACGACTTCAGCT
CTTTGGACACCAGCTCCTTGTTGCGGCAACAGGTAATAGAGGGGGAGATT
GACTTGATTATGTGTATTGGCGATCTATCCTACAGCTCGGGTTATCTCTC
GCGATGGGATGCCTGGCTCGATCAAGTGGAGCAGGTTGCAGCTAGTGTGC
CTTTCATGACCACGCCGGGCAACCACGAACGTGACGACCCTTTCGCCTCG
TCCTTTTACACGACCGCTACCACCTATGCTGCCAATGAACACGCCGGGTT
CTCTATTTATAACACAAATGATGGTGGTGGCGAGTGTGGCGTTCCGTATC
AGACGTATTTCCCCATGCCCGGTCCTGGCGAGGACTCCCGTGGTGATCAG
CCGTGGTACTCGTTCAATTATGGGCCTGTGCATGTGACTGTGGCTTCCAC
AGAGCACGACTTTCGTGAAGGCTCTCGACAGTATGCATGGCTAGCACAGG
ATCTGGGCCAAGTGGATCGTATAGTGACACCCTGGTTGGTATTTGTGGGC
CATCGTCCATTCTATGTGGACAGCACGGAAGACCCGGAGCCTGCCAACCC
GCTAAGCCCCTCCGAGCAGGGTGCAGCGCGGTTGCTGCGCACACATCTGG
AGCCTTTGCTTTTGCAGCACCATGTGGATTTGTGTTTGGCTGGTCATCAT
CACAGTTATCAACGCACTTGCAAGGTCGCGGATGGGGAGTGCGTGGCCGA
GGCAGCCTACAAGGGTGCCTACATGGCGCCCGTGCACGCGATTGTGGGCA
TGGCCGGACGACGACTGTCGGTAAACTTTAAGACGGAAAGACCGGTGTAC
TTCGAGTCTGTCGAGAGGGAGTCCTGGGGCACCATGGTGTTGGAAGCGAC
ACCCTGGCGCTTGGTTATGACCTTCCGGGATTCCATCACGGCTCGAATCA
TGGATCAGACCATTCTACATGTGCCGCTCGAATATCTTGTCCAGCCAGAG
AAGAATGATGACGAGGCCTATCATAAGAATTACATGCCGCGTGGTGTTCG
CTACCGGTCCGAAAACATCAAATATTTGCAGCTCGTTTACTGGTTTCTAG
CGCTGGTGGTTATCCTGGGATTTGCCTTGACGTTGGGCAATATCTTAAGC
GGGGAGCGACTCCCGGTGTGGTGGTTGCGGCTCATGACAAATGTTGCGGG
AAGCGGTAATGATGGTGTTGGGGGGAATCGCTCTTTTCGCGATAAGCACG
ACATGTCTCCGGCCCCACCTTGTCTTGGCGAGCAGACTCCACTGACTGGC
TCGTCTTTGGATGGGAGTGGGAATGCGAGCAAACGGTATCGCACGGGGTC
CATTCACTATGCGGATGCGGTGTAGACGTTATGTCAATTTGTGAAATGCA
CGTGTAAAGAATGCGAATACGGATGTATTGAATGAAAATTGAAAATATGA
GCAAAAACGCCTCAAAATCTACTCCGAAGCTACCA back to topCoding sequence (CDS) from alignment at chr20:455001..457785+ >NO20G01470.1 ID=NO20G01470.1|Name=NO20G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=2397bp|location=Sequence derived from alignment at chr20:455001..457785+ (Nannochloropsis oceanica)
ATGTGGTGCCGACGCTTCTGTGGCAAGTTTACCAGTTTGGTCCTCCTGCT
TTTCAGCTCTTCCAGCATATTCAGTCATACAGTGGCACACAACATGACCC
GCATGCCCTCCGAGGTACTCGATGCAGCTGCCATTGCGAGGATTACGACG
GAGCTTGACCACACTATTTCGCTTGACGCCGCGCCGAAGGCGTTGCCCAA
CTCCGGCTCCTGGGTCACCGTGACATGGGAGGGCGTAAGGGGCCCCAGTG
CCACAGATTTCATCGCTGCATACGCAGTTCCCTTCGAGAAGGACGTTGAG
CTGGAGCCGTCGCGTCTCGCTCCAGTCAAGTATCAGTACGCGGCCTTTGC
CGACCCCAAGCACCTAGAAAGTGGGAGCGGCCAAATCAACTTCAGGCTGG
TGGAGCTTAGCGGAGATTATCGTTTTGGCTTTTTCAGAGGCAATGTCACC
CAGGGAGTGCTGGCGGCCTGGTCTAGCGACGTTGTTACTGTGGGCGAGCG
CAAGGGCAAGAAAGAGGGTGAAATCATTCTACGGCCACTGCAATTGCATT
TAGCTCTGACGGGCCAGCCATCAGAGATGCGCGTGACGTGGAAGACGAGT
GGCTTAGAGGCACCTGCAGCCAACACGTCATTGCAAGTGCAGTATTACGC
CCAGGGCAGCGGCTCATCCGAAGACAACACCAGCTGGGATACCAGCTCGG
CGACGTCCATGACATTTGACAAGGAAGACCTGTGTGGCGAGCCGGCGGAG
AGCGTGGGATTCCTGCCGCCGGGTTACGTGCACACGGCTGTCATGAAGGG
GCTGGCACCGGCCACGACGTACGAGTACAAGGTGGGCGACGCAACACAAG
ACATTTGGAGCACCACTTATAGCTTTCGGACGGGTCCTGCCGTGGCGCCA
GCGCCCGTGGTCATGGCTTCTGCAGCTGCGACTGCTCGTGGGAACGGCCG
AGCATTTTCTAGTGAATTCGATGACGCGGGACACTCGGTGCGAATCGCAA
TGATTGCGGACATGTCCAGCGCCGAGGAAGACGGCAGTTTGCAGGCTGGA
TGGTTCGCGAACGACTTCAGCTCTTTGGACACCAGCTCCTTGTTGCGGCA
ACAGGTAATAGAGGGGGAGATTGACTTGATTATGTGTATTGGCGATCTAT
CCTACAGCTCGGGTTATCTCTCGCGATGGGATGCCTGGCTCGATCAAGTG
GAGCAGGTTGCAGCTAGTGTGCCTTTCATGACCACGCCGGGCAACCACGA
ACGTGACGACCCTTTCGCCTCGTCCTTTTACACGACCGCTACCACCTATG
CTGCCAATGAACACGCCGGGTTCTCTATTTATAACACAAATGATGGTGGT
GGCGAGTGTGGCGTTCCGTATCAGACGTATTTCCCCATGCCCGGTCCTGG
CGAGGACTCCCGTGGTGATCAGCCGTGGTACTCGTTCAATTATGGGCCTG
TGCATGTGACTGTGGCTTCCACAGAGCACGACTTTCGTGAAGGCTCTCGA
CAGTATGCATGGCTAGCACAGGATCTGGGCCAAGTGGATCGTATAGTGAC
ACCCTGGTTGGTATTTGTGGGCCATCGTCCATTCTATGTGGACAGCACGG
AAGACCCGGAGCCTGCCAACCCGCTAAGCCCCTCCGAGCAGGGTGCAGCG
CGGTTGCTGCGCACACATCTGGAGCCTTTGCTTTTGCAGCACCATGTGGA
TTTGTGTTTGGCTGGTCATCATCACAGTTATCAACGCACTTGCAAGGTCG
CGGATGGGGAGTGCGTGGCCGAGGCAGCCTACAAGGGTGCCTACATGGCG
CCCGTGCACGCGATTGTGGGCATGGCCGGACGACGACTGTCGGTAAACTT
TAAGACGGAAAGACCGGTGTACTTCGAGTCTGTCGAGAGGGAGTCCTGGG
GCACCATGGTGTTGGAAGCGACACCCTGGCGCTTGGTTATGACCTTCCGG
GATTCCATCACGGCTCGAATCATGGATCAGACCATTCTACATGTGCCGCT
CGAATATCTTGTCCAGCCAGAGAAGAATGATGACGAGGCCTATCATAAGA
ATTACATGCCGCGTGGTGTTCGCTACCGGTCCGAAAACATCAAATATTTG
CAGCTCGTTTACTGGTTTCTAGCGCTGGTGGTTATCCTGGGATTTGCCTT
GACGTTGGGCAATATCTTAAGCGGGGAGCGACTCCCGGTGTGGTGGTTGC
GGCTCATGACAAATGTTGCGGGAAGCGGTAATGATGGTGTTGGGGGGAAT
CGCTCTTTTCGCGATAAGCACGACATGTCTCCGGCCCCACCTTGTCTTGG
CGAGCAGACTCCACTGACTGGCTCGTCTTTGGATGGGAGTGGGAATGCGA
GCAAACGGTATCGCACGGGGTCCATTCACTATGCGGATGCGGTGTAG back to top
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