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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr20 | genome | chr20:386782..388224 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G01280.1 vs.
Match: EWM22091.1 (gamma-glutamyl hydrolase [Nannochloropsis gaditana]) HSP 1 Score: 420.2 bits (1079), Expect = 5.700e-114 Identity = 199/287 (69.34%), Postives = 230/287 (80.14%), Query Frame = 0
Query: 36 TTGPVIGVVAQPKKSFIHPCDGDCEYIAASYVKWVESAGGRVLPIPYDASPKDLDTIFASVNGLLFPGGSSLISKGARHLFLRARQANEAGDFFPVWGTCLGLEWMVEAVCAEAEEADPSLPHFTMDNDYDAWNLTLPLLFTESASTSRLFQGLNPSSRTAARTQNITLNNHHKGVSPSHLAVTPALASFFDVLSTNLDRKGLPFVSTVEGKNGMPFYGVQFHPEKALFEWGVEEVGDGGTAKEDVVWWPYEAINHSPSAQALTLYLANFFLGEARKNGHVFPEERG 323
T GPVIGV+AQPK S + PCDG CEYIAASYVKWVESAGGRVLP+PY+AS LD IFASVNGLLFPGGS+++S GA+HLF RAR+A+EAGD+FPVWGTCLGLEWMVEAVCAEA DP P F +D YDAWNLTLPL FTE+A TSRLF L P+ AA +++T+NNHHKGV+P+HLA TPAL+ F V+ST+LDR G PFVST+EGK+G P+YGVQFHPEKA+FEWGV DGG A WP+EA NHS +AQ L YLA+FF+GEARKN H FPE G
Sbjct: 69 TVGPVIGVLAQPKFSNLAPCDGVCEYIAASYVKWVESAGGRVLPVPYNASFDALDAIFASVNGLLFPGGSNVLSVGAKHLFSRAREAHEAGDYFPVWGTCLGLEWMVEAVCAEAVSKDPEAPRFVIDTGYDAWNLTLPLSFTEAAKTSRLFHELPPALWDAAAAEHLTMNNHHKGVAPAHLAATPALSEAFTVISTDLDRSGTPFVSTLEGKDGRPWYGVQFHPEKAIFEWGVAGGEDGGEA------WPFEATNHSLAAQNLARYLADFFVGEARKNRHAFPETEG 349
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G01280.1 ID=NO20G01280.1|Name=NO20G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp AGCACAGGCAAAATTATGAGGATCTGGATGACGTCGAGCATGTTGCATCT GCTTAACCCTTTCTCGCTTTTCCTGGCCTTGCTTCTGGTTCTGCCGAAGA CAGCGAATGCTACTCCGCAAACAACAGGCCCCGTTATTGGCGTGGTCGCT CAGCCCAAAAAGTCTTTCATCCATCCCTGTGACGGTGACTGTGAGTATAT CGCAGCCAGTTACGTCAAATGGGTCGAGAGTGCGGGCGGTCGCGTCTTGC CGATTCCGTACGATGCCTCTCCAAAAGACCTGGACACGATTTTTGCGTCC GTCAACGGCCTGCTCTTCCCAGGCGGGAGTAGCTTGATCTCCAAGGGTGC AAGGCACTTATTTCTCAGAGCACGACAAGCGAATGAGGCGGGGGATTTCT TCCCTGTCTGGGGGACGTGCTTAGGGCTGGAGTGGATGGTCGAAGCCGTA TGTGCCGAAGCCGAAGAGGCTGATCCGTCCCTTCCCCACTTTACGATGGA CAACGACTACGACGCATGGAACCTGACGTTGCCCTTACTTTTTACTGAAA GTGCGAGCACCAGTCGATTATTTCAAGGCCTGAACCCTAGCTCGCGTACT GCGGCTCGGACACAAAATATAACGCTCAACAACCACCACAAGGGTGTATC GCCCTCCCATTTAGCAGTTACCCCAGCGTTAGCATCTTTCTTTGATGTGC TTTCCACAAATTTAGACAGAAAGGGTTTGCCATTTGTCTCAACGGTGGAA GGAAAGAATGGAATGCCTTTTTATGGCGTCCAGTTTCACCCGGAAAAGGC CTTGTTTGAATGGGGGGTCGAGGAGGTGGGAGATGGAGGAACGGCGAAAG AAGACGTGGTATGGTGGCCGTACGAGGCTATCAATCACTCCCCTTCCGCG CAGGCGTTGACTCTCTATTTGGCCAATTTTTTTCTGGGGGAGGCAAGGAA GAATGGGCACGTGTTTCCCGAGGAGAGGGGGGGGAGGTGTTAAGTTGGGC TTACCCTGTCGTGTATTCGGGACCAGAATTTGTTCAATCGTATTTTTTCC ACGAATATTATTTTCCTGGGAAAGGTGATTATCCGAACGAGGATATGGGC AGTGGTGCTGTCGTACATGATGATGATGATGATAATGATGATGATGACGA TAAAGCTGCAGCTCCTGCTGCTACTGTTGCTGTCGCAGCTGAGGGAGAGG AAGGTCGTGGTGGCAATGGAGGTGCGACTGCTATCGCTGAGGGAGAGGAG GACGAACAATCATTCGAGCGTGCCTCGCATGCATTGCGAGGAGGGAGAGC CAAGAGCAACGGCGGCATCCTGCTGGAAATGGCATGAAAAAATGTCACGA GAAAGAGACGAATTATTACCTGATTGGTTGAACACATGTAAAAACATTCA CAAGTTAGAGGAGGCGAAAAATGCAAAAAAAGAAGAAGGAGAA back to topprotein sequence of NO20G01280.1 >NO20G01280.1-protein ID=NO20G01280.1-protein|Name=NO20G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp MRIWMTSSMLHLLNPFSLFLALLLVLPKTANATPQTTGPVIGVVAQPKKS FIHPCDGDCEYIAASYVKWVESAGGRVLPIPYDASPKDLDTIFASVNGLL FPGGSSLISKGARHLFLRARQANEAGDFFPVWGTCLGLEWMVEAVCAEAE EADPSLPHFTMDNDYDAWNLTLPLLFTESASTSRLFQGLNPSSRTAARTQ NITLNNHHKGVSPSHLAVTPALASFFDVLSTNLDRKGLPFVSTVEGKNGM PFYGVQFHPEKALFEWGVEEVGDGGTAKEDVVWWPYEAINHSPSAQALTL YLANFFLGEARKNGHVFPEERGGRC* back to topmRNA from alignment at chr20:386782..388224- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G01280.1 ID=NO20G01280.1|Name=NO20G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at chr20:386782..388224- (Nannochloropsis oceanica) AGCACAGGCAAAATTATGAGGATCTGGATGACGTCGAGCATGTTGCATCT
GCTTAACCCTTTCTCGCTTTTCCTGGCCTTGCTTCTGGTTCTGCCGAAGA
CAGCGAATGCTACTCCGCAAACAACAGGCCCCGTTATTGGCGTGGTCGCT
CAGCCCAAAAAGTCTTTCATCCATCCCTGTGACGGTGACTGTGAGTATAT
CGCAGCCAGTTACGTCAAATGGGTCGAGAGTGCGGGCGGTCGCGTCTTGC
CGATTCCGTACGATGCCTCTCCAAAAGACCTGGACACGATTTTTGCGTCC
GTCAACGGCCTGCTCTTCCCAGGCGGGAGTAGCTTGATCTCCAAGGGTGC
AAGGCACTTATTTCTCAGAGCACGACAAGCGAATGAGGCGGGGGATTTCT
TCCCTGTCTGGGGGACGTGCTTAGGGCTGGAGTGGATGGTCGAAGCCGTA
TGTGCCGAAGCCGAAGAGGCTGATCCGTCCCTTCCCCACTTTACGATGGA
CAACGACTACGACGCATGGAACCTGACGTTGCCCTTACTTTTTACTGAAA
GTGCGAGCACCAGTCGATTATTTCAAGGCCTGAACCCTAGCTCGCGTACT
GCGGCTCGGACACAAAATATAACGCTCAACAACCACCACAAGGGTGTATC
GCCCTCCCATTTAGCAGTTACCCCAGCGTTAGCATCTTTCTTTGATGTGC
TTTCCACAAATTTAGACAGAAAGGGTTTGCCATTTGTCTCAACGGTGGAA
GGAAAGAATGGAATGCCTTTTTATGGCGTCCAGTTTCACCCGGAAAAGGC
CTTGTTTGAATGGGGGGTCGAGGAGGTGGGAGATGGAGGAACGGCGAAAG
AAGACGTGGTATGGTGGCCGTACGAGGCTATCAATCACTCCCCTTCCGCG
CAGGCGTTGACTCTCTATTTGGCCAATTTTTTTCTGGGGGAGGCAAGGAA
GAATGGGCACGTGTTTCCCGAGGAGAGGGGGGGGAGGTGTTAAGTTGGGC
TTACCCTGTCGTGTATTCGGGACCAGAATTTGTTCAATCGTATTTTTTCC
ACGAATATTATTTTCCTGGGAAAGGTGATTATCCGAACGAGGATATGGGC
AGTGGTGCTGTCGTACATGATGATGATGATGATAATGATGATGATGACGA
TAAAGCTGCAGCTCCTGCTGCTACTGTTGCTGTCGCAGCTGAGGGAGAGG
AAGGTCGTGGTGGCAATGGAGGTGCGACTGCTATCGCTGAGGGAGAGGAG
GACGAACAATCATTCGAGCGTGCCTCGCATGCATTGCGAGGAGGGAGAGC
CAAGAGCAACGGCGGCATCCTGCTGGAAATGGCATGAAAAAATGTCACGA
GAAAGAGACGAATTATTACCTGATTGGTTGAACACATGTAAAAACATTCA
CAAGTTAGAGGAGGCGAAAAATGCAAAAAAAGAAGAAGGAGAA back to topCoding sequence (CDS) from alignment at chr20:386782..388224- >NO20G01280.1 ID=NO20G01280.1|Name=NO20G01280.1|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at chr20:386782..388224- (Nannochloropsis oceanica) ATGAGGATCTGGATGACGTCGAGCATGTTGCATCTGCTTAACCCTTTCTC GCTTTTCCTGGCCTTGCTTCTGGTTCTGCCGAAGACAGCGAATGCTACTC CGCAAACAACAGGCCCCGTTATTGGCGTGGTCGCTCAGCCCAAAAAGTCT TTCATCCATCCCTGTGACGGTGACTGTGAGTATATCGCAGCCAGTTACGT CAAATGGGTCGAGAGTGCGGGCGGTCGCGTCTTGCCGATTCCGTACGATG CCTCTCCAAAAGACCTGGACACGATTTTTGCGTCCGTCAACGGCCTGCTC TTCCCAGGCGGGAGTAGCTTGATCTCCAAGGGTGCAAGGCACTTATTTCT CAGAGCACGACAAGCGAATGAGGCGGGGGATTTCTTCCCTGTCTGGGGGA CGTGCTTAGGGCTGGAGTGGATGGTCGAAGCCGTATGTGCCGAAGCCGAA GAGGCTGATCCGTCCCTTCCCCACTTTACGATGGACAACGACTACGACGC ATGGAACCTGACGTTGCCCTTACTTTTTACTGAAAGTGCGAGCACCAGTC GATTATTTCAAGGCCTGAACCCTAGCTCGCGTACTGCGGCTCGGACACAA AATATAACGCTCAACAACCACCACAAGGGTGTATCGCCCTCCCATTTAGC AGTTACCCCAGCGTTAGCATCTTTCTTTGATGTGCTTTCCACAAATTTAG ACAGAAAGGGTTTGCCATTTGTCTCAACGGTGGAAGGAAAGAATGGAATG CCTTTTTATGGCGTCCAGTTTCACCCGGAAAAGGCCTTGTTTGAATGGGG GGTCGAGGAGGTGGGAGATGGAGGAACGGCGAAAGAAGACGTGGTATGGT GGCCGTACGAGGCTATCAATCACTCCCCTTCCGCGCAGGCGTTGACTCTC TATTTGGCCAATTTTTTTCTGGGGGAGGCAAGGAAGAATGGGCACGTGTT TCCCGAGGAGAGGGGGGGGAGGTGTTAA back to top
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