NO20G01280.1, NO20G01280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01280.1
Unique NameNO20G01280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1443
Alignment locationchr20:386782..388224 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:386782..388224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO20G01280.1 vs.
Match: EWM22091.1 (gamma-glutamyl hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 420.2 bits (1079), Expect = 5.700e-114
Identity = 199/287 (69.34%), Postives = 230/287 (80.14%), Query Frame = 0
Query:   36 TTGPVIGVVAQPKKSFIHPCDGDCEYIAASYVKWVESAGGRVLPIPYDASPKDLDTIFASVNGLLFPGGSSLISKGARHLFLRARQANEAGDFFPVWGTCLGLEWMVEAVCAEAEEADPSLPHFTMDNDYDAWNLTLPLLFTESASTSRLFQGLNPSSRTAARTQNITLNNHHKGVSPSHLAVTPALASFFDVLSTNLDRKGLPFVSTVEGKNGMPFYGVQFHPEKALFEWGVEEVGDGGTAKEDVVWWPYEAINHSPSAQALTLYLANFFLGEARKNGHVFPEERG 323
            T GPVIGV+AQPK S + PCDG CEYIAASYVKWVESAGGRVLP+PY+AS   LD IFASVNGLLFPGGS+++S GA+HLF RAR+A+EAGD+FPVWGTCLGLEWMVEAVCAEA   DP  P F +D  YDAWNLTLPL FTE+A TSRLF  L P+   AA  +++T+NNHHKGV+P+HLA TPAL+  F V+ST+LDR G PFVST+EGK+G P+YGVQFHPEKA+FEWGV    DGG A      WP+EA NHS +AQ L  YLA+FF+GEARKN H FPE  G
Sbjct:   69 TVGPVIGVLAQPKFSNLAPCDGVCEYIAASYVKWVESAGGRVLPVPYNASFDALDAIFASVNGLLFPGGSNVLSVGAKHLFSRAREAHEAGDYFPVWGTCLGLEWMVEAVCAEAVSKDPEAPRFVIDTGYDAWNLTLPLSFTEAAKTSRLFHELPPALWDAAAAEHLTMNNHHKGVAPAHLAATPALSEAFTVISTDLDRSGTPFVSTLEGKDGRPWYGVQFHPEKAIFEWGVAGGEDGGEA------WPFEATNHSLAAQNLARYLADFFVGEARKNRHAFPETEG 349          
The following BLAST results are available for this feature:
BLAST of NO20G01280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22091.15.700e-11469.34gamma-glutamyl hydrolase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01280NO20G01280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01280.1NO20G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01280.1.cds1NO20G01280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01280.1 ID=NO20G01280.1|Name=NO20G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp
AGCACAGGCAAAATTATGAGGATCTGGATGACGTCGAGCATGTTGCATCT
GCTTAACCCTTTCTCGCTTTTCCTGGCCTTGCTTCTGGTTCTGCCGAAGA
CAGCGAATGCTACTCCGCAAACAACAGGCCCCGTTATTGGCGTGGTCGCT
CAGCCCAAAAAGTCTTTCATCCATCCCTGTGACGGTGACTGTGAGTATAT
CGCAGCCAGTTACGTCAAATGGGTCGAGAGTGCGGGCGGTCGCGTCTTGC
CGATTCCGTACGATGCCTCTCCAAAAGACCTGGACACGATTTTTGCGTCC
GTCAACGGCCTGCTCTTCCCAGGCGGGAGTAGCTTGATCTCCAAGGGTGC
AAGGCACTTATTTCTCAGAGCACGACAAGCGAATGAGGCGGGGGATTTCT
TCCCTGTCTGGGGGACGTGCTTAGGGCTGGAGTGGATGGTCGAAGCCGTA
TGTGCCGAAGCCGAAGAGGCTGATCCGTCCCTTCCCCACTTTACGATGGA
CAACGACTACGACGCATGGAACCTGACGTTGCCCTTACTTTTTACTGAAA
GTGCGAGCACCAGTCGATTATTTCAAGGCCTGAACCCTAGCTCGCGTACT
GCGGCTCGGACACAAAATATAACGCTCAACAACCACCACAAGGGTGTATC
GCCCTCCCATTTAGCAGTTACCCCAGCGTTAGCATCTTTCTTTGATGTGC
TTTCCACAAATTTAGACAGAAAGGGTTTGCCATTTGTCTCAACGGTGGAA
GGAAAGAATGGAATGCCTTTTTATGGCGTCCAGTTTCACCCGGAAAAGGC
CTTGTTTGAATGGGGGGTCGAGGAGGTGGGAGATGGAGGAACGGCGAAAG
AAGACGTGGTATGGTGGCCGTACGAGGCTATCAATCACTCCCCTTCCGCG
CAGGCGTTGACTCTCTATTTGGCCAATTTTTTTCTGGGGGAGGCAAGGAA
GAATGGGCACGTGTTTCCCGAGGAGAGGGGGGGGAGGTGTTAAGTTGGGC
TTACCCTGTCGTGTATTCGGGACCAGAATTTGTTCAATCGTATTTTTTCC
ACGAATATTATTTTCCTGGGAAAGGTGATTATCCGAACGAGGATATGGGC
AGTGGTGCTGTCGTACATGATGATGATGATGATAATGATGATGATGACGA
TAAAGCTGCAGCTCCTGCTGCTACTGTTGCTGTCGCAGCTGAGGGAGAGG
AAGGTCGTGGTGGCAATGGAGGTGCGACTGCTATCGCTGAGGGAGAGGAG
GACGAACAATCATTCGAGCGTGCCTCGCATGCATTGCGAGGAGGGAGAGC
CAAGAGCAACGGCGGCATCCTGCTGGAAATGGCATGAAAAAATGTCACGA
GAAAGAGACGAATTATTACCTGATTGGTTGAACACATGTAAAAACATTCA
CAAGTTAGAGGAGGCGAAAAATGCAAAAAAAGAAGAAGGAGAA
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protein sequence of NO20G01280.1

>NO20G01280.1-protein ID=NO20G01280.1-protein|Name=NO20G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MRIWMTSSMLHLLNPFSLFLALLLVLPKTANATPQTTGPVIGVVAQPKKS
FIHPCDGDCEYIAASYVKWVESAGGRVLPIPYDASPKDLDTIFASVNGLL
FPGGSSLISKGARHLFLRARQANEAGDFFPVWGTCLGLEWMVEAVCAEAE
EADPSLPHFTMDNDYDAWNLTLPLLFTESASTSRLFQGLNPSSRTAARTQ
NITLNNHHKGVSPSHLAVTPALASFFDVLSTNLDRKGLPFVSTVEGKNGM
PFYGVQFHPEKALFEWGVEEVGDGGTAKEDVVWWPYEAINHSPSAQALTL
YLANFFLGEARKNGHVFPEERGGRC*
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mRNA from alignment at chr20:386782..388224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01280.1 ID=NO20G01280.1|Name=NO20G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at chr20:386782..388224- (Nannochloropsis oceanica)
AGCACAGGCAAAATTATGAGGATCTGGATGACGTCGAGCATGTTGCATCT GCTTAACCCTTTCTCGCTTTTCCTGGCCTTGCTTCTGGTTCTGCCGAAGA CAGCGAATGCTACTCCGCAAACAACAGGCCCCGTTATTGGCGTGGTCGCT CAGCCCAAAAAGTCTTTCATCCATCCCTGTGACGGTGACTGTGAGTATAT CGCAGCCAGTTACGTCAAATGGGTCGAGAGTGCGGGCGGTCGCGTCTTGC CGATTCCGTACGATGCCTCTCCAAAAGACCTGGACACGATTTTTGCGTCC GTCAACGGCCTGCTCTTCCCAGGCGGGAGTAGCTTGATCTCCAAGGGTGC AAGGCACTTATTTCTCAGAGCACGACAAGCGAATGAGGCGGGGGATTTCT TCCCTGTCTGGGGGACGTGCTTAGGGCTGGAGTGGATGGTCGAAGCCGTA TGTGCCGAAGCCGAAGAGGCTGATCCGTCCCTTCCCCACTTTACGATGGA CAACGACTACGACGCATGGAACCTGACGTTGCCCTTACTTTTTACTGAAA GTGCGAGCACCAGTCGATTATTTCAAGGCCTGAACCCTAGCTCGCGTACT GCGGCTCGGACACAAAATATAACGCTCAACAACCACCACAAGGGTGTATC GCCCTCCCATTTAGCAGTTACCCCAGCGTTAGCATCTTTCTTTGATGTGC TTTCCACAAATTTAGACAGAAAGGGTTTGCCATTTGTCTCAACGGTGGAA GGAAAGAATGGAATGCCTTTTTATGGCGTCCAGTTTCACCCGGAAAAGGC CTTGTTTGAATGGGGGGTCGAGGAGGTGGGAGATGGAGGAACGGCGAAAG AAGACGTGGTATGGTGGCCGTACGAGGCTATCAATCACTCCCCTTCCGCG CAGGCGTTGACTCTCTATTTGGCCAATTTTTTTCTGGGGGAGGCAAGGAA GAATGGGCACGTGTTTCCCGAGGAGAGGGGGGGGAGGTGTTAAGTTGGGC TTACCCTGTCGTGTATTCGGGACCAGAATTTGTTCAATCGTATTTTTTCC ACGAATATTATTTTCCTGGGAAAGGTGATTATCCGAACGAGGATATGGGC AGTGGTGCTGTCGTACATGATGATGATGATGATAATGATGATGATGACGA TAAAGCTGCAGCTCCTGCTGCTACTGTTGCTGTCGCAGCTGAGGGAGAGG AAGGTCGTGGTGGCAATGGAGGTGCGACTGCTATCGCTGAGGGAGAGGAG GACGAACAATCATTCGAGCGTGCCTCGCATGCATTGCGAGGAGGGAGAGC CAAGAGCAACGGCGGCATCCTGCTGGAAATGGCATGAAAAAATGTCACGA GAAAGAGACGAATTATTACCTGATTGGTTGAACACATGTAAAAACATTCA CAAGTTAGAGGAGGCGAAAAATGCAAAAAAAGAAGAAGGAGAA
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Coding sequence (CDS) from alignment at chr20:386782..388224-

>NO20G01280.1 ID=NO20G01280.1|Name=NO20G01280.1|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at chr20:386782..388224- (Nannochloropsis oceanica)
ATGAGGATCTGGATGACGTCGAGCATGTTGCATCTGCTTAACCCTTTCTC
GCTTTTCCTGGCCTTGCTTCTGGTTCTGCCGAAGACAGCGAATGCTACTC
CGCAAACAACAGGCCCCGTTATTGGCGTGGTCGCTCAGCCCAAAAAGTCT
TTCATCCATCCCTGTGACGGTGACTGTGAGTATATCGCAGCCAGTTACGT
CAAATGGGTCGAGAGTGCGGGCGGTCGCGTCTTGCCGATTCCGTACGATG
CCTCTCCAAAAGACCTGGACACGATTTTTGCGTCCGTCAACGGCCTGCTC
TTCCCAGGCGGGAGTAGCTTGATCTCCAAGGGTGCAAGGCACTTATTTCT
CAGAGCACGACAAGCGAATGAGGCGGGGGATTTCTTCCCTGTCTGGGGGA
CGTGCTTAGGGCTGGAGTGGATGGTCGAAGCCGTATGTGCCGAAGCCGAA
GAGGCTGATCCGTCCCTTCCCCACTTTACGATGGACAACGACTACGACGC
ATGGAACCTGACGTTGCCCTTACTTTTTACTGAAAGTGCGAGCACCAGTC
GATTATTTCAAGGCCTGAACCCTAGCTCGCGTACTGCGGCTCGGACACAA
AATATAACGCTCAACAACCACCACAAGGGTGTATCGCCCTCCCATTTAGC
AGTTACCCCAGCGTTAGCATCTTTCTTTGATGTGCTTTCCACAAATTTAG
ACAGAAAGGGTTTGCCATTTGTCTCAACGGTGGAAGGAAAGAATGGAATG
CCTTTTTATGGCGTCCAGTTTCACCCGGAAAAGGCCTTGTTTGAATGGGG
GGTCGAGGAGGTGGGAGATGGAGGAACGGCGAAAGAAGACGTGGTATGGT
GGCCGTACGAGGCTATCAATCACTCCCCTTCCGCGCAGGCGTTGACTCTC
TATTTGGCCAATTTTTTTCTGGGGGAGGCAAGGAAGAATGGGCACGTGTT
TCCCGAGGAGAGGGGGGGGAGGTGTTAA
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Synonyms
Publications