NO20G01270.1, NO20G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01270.1
Unique NameNO20G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1062
Alignment locationchr20:385681..386742 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:385681..386742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO20G01270.1 vs.
Match: XP_008605743.1 (hypothetical protein SDRG_01964 [Saprolegnia diclina VS20]; EQC40899.1 hypothetical protein SDRG_01964 [Saprolegnia diclina VS20])

HSP 1 Score: 129.0 bits (323), Expect = 2.900e-26
Identity = 85/261 (32.57%), Postives = 147/261 (56.32%), Query Frame = 0 
Query:   82 KVEAKKMLMVNARRDKMRRHKRKR----EAQECSITEAER----DARRARDAQATAWLEEV--YALDAGLSSQREVLSPRLRIAIDLVYDSTSSLYSSLGRQLGCAYGLMRKASRVDLIPSVHLTCAKGEVMEALAKNGGNAWRMHRHAASVFDVFPNKERLIYLTPDSPNILEEIDPSKVYVIGGLVDRVVLKNKSYSRAA-THGVATARLPLKEFFSKQGTKGQKHMSNMALAVDRVIQILMKKYEVDDWDEALSAVFP 332
            +++ ++  +   R+DK R+H+ +R    EA++ SIT+ E+    DA+ A+   A   LE+   YA+  GL         R+ + ++ +++ T     S+ +Q+ C YG M+K+    L+ S+HL   +G++     K G NAW++ RHAA + ++FP    ++ L+PDSPN+L E+DP+ VYV+GG+VDR V K+++ ++AA    + TARLP++E           ++ +  L +D V+  LM+     DW  A  A  P
Sbjct:   47 RIDHRRAAIDARRKDKKRQHQAERQIAYEARDDSITQEEKQMRYDAKIAQKQLAKTQLEDKLNYAMATGL---------RVVVDLNFLHEQTPRERHSVIKQVACVYGAMKKSELPSLL-SLHLASYEGDIAALCEKRGANAWKVTRHAAPIEELFPG-HMIVLLSPDSPNVLTELDPTAVYVVGGIVDRTVRKSETLTKAARVQHITTARLPVQE---------TCNVRSHVLNIDTVLLTLMEVANHGDWQRAFEATLP 287
The following BLAST results are available for this feature:
BLAST of NO20G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008605743.12.900e-2632.57hypothetical protein SDRG_01964 [Saprolegnia dicli... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01270NO20G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01270.1NO20G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01270.1.cds1NO20G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01270.1 ID=NO20G01270.1|Name=NO20G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
ATGGCGCTGGGTGCTTCAGCTGCCGCACGAAGGTTAACACCACCACTGCT
GACCTCCTCTCTCCGCACTACTGTCCTGGTCGCCGTGCACAACTCCACTA
CTCACGGAGACGACGACGACGTTGCAAGAAGAAGACGTCAATTGTATAGT
CCGCGTTGTCTTTTGTCTTCGGGGCCATTATCCCCAAAAATACCACAAAC
TACGCGCGAGGCGCTCATTGCCCAGACCAAGGCCAAGGTGGCTAAAGTCG
AAGCCAAGAAAATGCTCATGGTCAACGCCCGCCGCGACAAGATGCGTCGG
CACAAACGCAAGCGAGAAGCACAAGAATGCAGCATAACCGAGGCCGAGCG
AGACGCAAGAAGGGCACGAGACGCGCAAGCTACGGCATGGCTCGAAGAAG
TTTACGCTTTGGACGCAGGCCTCTCCTCGCAACGGGAGGTCTTGTCCCCA
CGTCTCCGCATCGCGATTGACTTGGTGTACGATTCAACATCTAGTCTCTA
TTCCTCTCTTGGTCGTCAATTAGGATGTGCTTATGGCCTGATGCGGAAAG
CCTCCCGGGTCGACCTCATCCCCAGTGTCCATTTAACTTGCGCAAAGGGA
GAGGTCATGGAGGCATTGGCCAAGAATGGAGGGAACGCCTGGCGCATGCA
CCGGCATGCTGCCTCTGTTTTTGACGTCTTTCCAAACAAAGAACGCTTGA
TTTACTTGACGCCTGACTCCCCTAATATATTGGAAGAAATCGACCCGAGC
AAGGTCTACGTCATTGGTGGCTTGGTCGACCGTGTGGTGCTAAAAAATAA
GTCGTACAGTCGCGCTGCTACCCATGGAGTGGCCACGGCTCGGCTGCCAT
TGAAAGAATTTTTTAGCAAGCAGGGGACGAAGGGTCAGAAGCACATGTCA
AATATGGCCTTGGCTGTGGATCGTGTGATTCAGATTCTGATGAAGAAATA
TGAGGTGGATGACTGGGATGAGGCCCTGTCAGCAGTCTTTCCGGGAGCAG
TGGCGATGGTAGGAAGGGGGGTAGGAGAAGAGGGAGTGAACAAAAACGAT
GCATCAAATTAA
back to top

protein sequence of NO20G01270.1

>NO20G01270.1-protein ID=NO20G01270.1-protein|Name=NO20G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MALGASAAARRLTPPLLTSSLRTTVLVAVHNSTTHGDDDDVARRRRQLYS
PRCLLSSGPLSPKIPQTTREALIAQTKAKVAKVEAKKMLMVNARRDKMRR
HKRKREAQECSITEAERDARRARDAQATAWLEEVYALDAGLSSQREVLSP
RLRIAIDLVYDSTSSLYSSLGRQLGCAYGLMRKASRVDLIPSVHLTCAKG
EVMEALAKNGGNAWRMHRHAASVFDVFPNKERLIYLTPDSPNILEEIDPS
KVYVIGGLVDRVVLKNKSYSRAATHGVATARLPLKEFFSKQGTKGQKHMS
NMALAVDRVIQILMKKYEVDDWDEALSAVFPGAVAMVGRGVGEEGVNKND
ASN*
back to top

mRNA from alignment at chr20:385681..386742+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01270.1 ID=NO20G01270.1|Name=NO20G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at chr20:385681..386742+ (Nannochloropsis oceanica)
ATGGCGCTGGGTGCTTCAGCTGCCGCACGAAGGTTAACACCACCACTGCT
GACCTCCTCTCTCCGCACTACTGTCCTGGTCGCCGTGCACAACTCCACTA
CTCACGGAGACGACGACGACGTTGCAAGAAGAAGACGTCAATTGTATAGT
CCGCGTTGTCTTTTGTCTTCGGGGCCATTATCCCCAAAAATACCACAAAC
TACGCGCGAGGCGCTCATTGCCCAGACCAAGGCCAAGGTGGCTAAAGTCG
AAGCCAAGAAAATGCTCATGGTCAACGCCCGCCGCGACAAGATGCGTCGG
CACAAACGCAAGCGAGAAGCACAAGAATGCAGCATAACCGAGGCCGAGCG
AGACGCAAGAAGGGCACGAGACGCGCAAGCTACGGCATGGCTCGAAGAAG
TTTACGCTTTGGACGCAGGCCTCTCCTCGCAACGGGAGGTCTTGTCCCCA
CGTCTCCGCATCGCGATTGACTTGGTGTACGATTCAACATCTAGTCTCTA
TTCCTCTCTTGGTCGTCAATTAGGATGTGCTTATGGCCTGATGCGGAAAG
CCTCCCGGGTCGACCTCATCCCCAGTGTCCATTTAACTTGCGCAAAGGGA
GAGGTCATGGAGGCATTGGCCAAGAATGGAGGGAACGCCTGGCGCATGCA
CCGGCATGCTGCCTCTGTTTTTGACGTCTTTCCAAACAAAGAACGCTTGA
TTTACTTGACGCCTGACTCCCCTAATATATTGGAAGAAATCGACCCGAGC
AAGGTCTACGTCATTGGTGGCTTGGTCGACCGTGTGGTGCTAAAAAATAA
GTCGTACAGTCGCGCTGCTACCCATGGAGTGGCCACGGCTCGGCTGCCAT
TGAAAGAATTTTTTAGCAAGCAGGGGACGAAGGGTCAGAAGCACATGTCA
AATATGGCCTTGGCTGTGGATCGTGTGATTCAGATTCTGATGAAGAAATA
TGAGGTGGATGACTGGGATGAGGCCCTGTCAGCAGTCTTTCCGGGAGCAG
TGGCGATGGTAGGAAGGGGGGTAGGAGAAGAGGGAGTGAACAAAAACGAT
GCATCAAATTAA
back to top

Coding sequence (CDS) from alignment at chr20:385681..386742+

>NO20G01270.1 ID=NO20G01270.1|Name=NO20G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr20:385681..386742+ (Nannochloropsis oceanica)
ATGGCGCTGGGTGCTTCAGCTGCCGCACGAAGGTTAACACCACCACTGCT
GACCTCCTCTCTCCGCACTACTGTCCTGGTCGCCGTGCACAACTCCACTA
CTCACGGAGACGACGACGACGTTGCAAGAAGAAGACGTCAATTGTATAGT
CCGCGTTGTCTTTTGTCTTCGGGGCCATTATCCCCAAAAATACCACAAAC
TACGCGCGAGGCGCTCATTGCCCAGACCAAGGCCAAGGTGGCTAAAGTCG
AAGCCAAGAAAATGCTCATGGTCAACGCCCGCCGCGACAAGATGCGTCGG
CACAAACGCAAGCGAGAAGCACAAGAATGCAGCATAACCGAGGCCGAGCG
AGACGCAAGAAGGGCACGAGACGCGCAAGCTACGGCATGGCTCGAAGAAG
TTTACGCTTTGGACGCAGGCCTCTCCTCGCAACGGGAGGTCTTGTCCCCA
CGTCTCCGCATCGCGATTGACTTGGTGTACGATTCAACATCTAGTCTCTA
TTCCTCTCTTGGTCGTCAATTAGGATGTGCTTATGGCCTGATGCGGAAAG
CCTCCCGGGTCGACCTCATCCCCAGTGTCCATTTAACTTGCGCAAAGGGA
GAGGTCATGGAGGCATTGGCCAAGAATGGAGGGAACGCCTGGCGCATGCA
CCGGCATGCTGCCTCTGTTTTTGACGTCTTTCCAAACAAAGAACGCTTGA
TTTACTTGACGCCTGACTCCCCTAATATATTGGAAGAAATCGACCCGAGC
AAGGTCTACGTCATTGGTGGCTTGGTCGACCGTGTGGTGCTAAAAAATAA
GTCGTACAGTCGCGCTGCTACCCATGGAGTGGCCACGGCTCGGCTGCCAT
TGAAAGAATTTTTTAGCAAGCAGGGGACGAAGGGTCAGAAGCACATGTCA
AATATGGCCTTGGCTGTGGATCGTGTGATTCAGATTCTGATGAAGAAATA
TGAGGTGGATGACTGGGATGAGGCCCTGTCAGCAGTCTTTCCGGGAGCAG
TGGCGATGGTAGGAAGGGGGGTAGGAGAAGAGGGAGTGAACAAAAACGAT
GCATCAAATTAA
back to top
Synonyms
Publications