NO20G01110.1, NO20G01110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01110.1
Unique NameNO20G01110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1478
Alignment locationchr20:350270..351747 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:350270..351747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01110.1 vs.
Match: EWM22131.1 (dolichyl-phosphate beta-glucosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 516.9 bits (1330), Expect = 5.700e-143
Identity = 281/423 (66.43%), Postives = 322/423 (76.12%), Query Frame = 0 
Query:    5 VSSPSLSALPDSLGLQHVQAQQHLLAGAVALISAVLTLSFLYVFQPALAAWRRPQDHEPHTFVKYAPNSSSSSSSSSSNSDSPARNTRATRRATVAEEEEEERFPTLADPPTVLLSLVIPAYNEEVRLPVMLDATLAYLEEWKKRSSKNGSGSCSSSSSLTYELIVVDDGSTDRTVEVASRYSRILGSDVLRVLKLRTNRGKGGAIKEGMLHSRGEYALMVDADGATDITCLERMLIRTQGVEEGMEGGSMGIGVGSRAHYEKDSVATRAWYRTILMKGLHMLVTVLISGRIKDTQCGFKLFSRAANKILFGTLHLERWGFDLEIVHVCDRLGLPMVEVAVNWQEVEGSKLITNKLDVVLASVGIFRDMLCVRLCYLLGVWKTTPWTKEGLKVSGG-------------GGREG-GTRRRKVE 414
            ++SP++ +   S  LQ +   Q + A A+AL  AVL L   YVFQPA+AAWRRP++ EP+TF +YAP S  +  ++SS    P R TRA+ +A   E +EE  FPTLAD P VLLSLVIPAYNEE+RLPVMLD TLAYLE W +          +  SSLTYELIVVDDGSTD TV VAS YSR LGSDV+RVL+LR NRGKGGAI+EGMLH+RG YALMVDADGATDITCLER+L  TQ  EEG   GSM +GVGSRAHYEKDSVATRAWYRT+LMKGLH+LVTVLISGRI+DTQCGFKLF+R A K+ F TLHLERWGFDLEIVHVCDRLG+PM EV V WQEVEGSKLITNKLDVVLAS+GIFRDMLCVR+CYLLG+W+T P+++ GL   GG               R G G RRRK E
Sbjct:    1 MASPAMISTVSS-NLQALCNHQGIGAYALALGGAVLVLGLAYVFQPAVAAWRRPREREPYTFTRYAPGSGLAPGTASS----PGRRTRASAKAPTGEMKEES-FPTLADAPEVLLSLVIPAYNEEIRLPVMLDTTLAYLEAWSQ----------NPRSSLTYELIVVDDGSTDATVVVASEYSRRLGSDVVRVLRLRKNRGKGGAIREGMLHARGRYALMVDADGATDITCLERLLNATQAAEEGSSEGSMAVGVGSRAHYEKDSVATRAWYRTVLMKGLHLLVTVLISGRIRDTQCGFKLFTREAIKVCFTTLHLERWGFDLEIVHVCDRLGVPMAEVPVRWQEVEGSKLITNKLDVVLASIGIFRDMLCVRICYLLGLWRTAPYSRAGLWPEGGKFGTKDQGIDTSQAARHGKGQRRRKAE 407
The following BLAST results are available for this feature:
BLAST of NO20G01110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22131.15.700e-14366.43dolichyl-phosphate beta-glucosyltransferase [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01110NO20G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01110.1NO20G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01110.1.cds1NO20G01110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01110.1 ID=NO20G01110.1|Name=NO20G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp
CAGGCCCACAACAATCAAAGCTTATCATTGTTATCTTGTCCGCCCATCTC
GCCTCCTCGTGAATGCGCACGCCTCCATCCTGCTTCTCCTCCTTGGCAAC
TACACCCTACCAACACTTCTGCCGCAGCAGCACCATCACTCCAATCATCC
AGGCTGCCGTCAGCCCCACCACTAACGCCGCCGCGTGACTAGCATTTGCG
TCCCCTCCCTTTCACTCCATCGCCCCTCGAAGTACCATGGTCCTCTCCGT
CTCTTCCCCCTCCCTCTCCGCCTTGCCTGACAGTCTAGGACTGCAACATG
TCCAAGCACAACAGCACCTCCTCGCAGGTGCTGTAGCATTGATCAGCGCT
GTCTTGACTCTCAGTTTTCTCTACGTCTTTCAACCCGCCCTCGCTGCCTG
GCGCCGGCCACAGGACCACGAGCCCCACACCTTTGTCAAATACGCACCGA
ACAGCAGTAGTAGCAGCAGCAGCAGTAGTAGTAATAGCGATAGTCCAGCG
AGAAACACCCGAGCAACAAGAAGAGCGACCGTAGCGGAGGAGGAGGAGGA
GGAACGCTTCCCTACCCTTGCTGACCCCCCGACGGTGTTGCTCTCTCTAG
TCATTCCCGCCTACAATGAAGAAGTCCGTTTGCCCGTCATGCTGGACGCG
ACTCTTGCTTACCTCGAGGAATGGAAGAAACGCAGCAGCAAGAATGGTAG
TGGTAGTTGCAGCAGCAGCAGCAGCTTGACGTATGAGTTGATTGTCGTCG
ATGACGGGAGTACGGATAGAACAGTCGAGGTCGCGTCAAGGTATTCGCGC
ATACTCGGTTCCGACGTGCTCAGAGTCTTGAAACTCCGCACAAATAGGGG
GAAAGGAGGGGCGATCAAGGAAGGTATGCTTCATAGCAGAGGAGAATATG
CGTTGATGGTCGACGCGGATGGTGCCACTGACATTACGTGTTTAGAACGC
ATGTTGATCCGCACGCAAGGGGTAGAGGAAGGGATGGAGGGAGGGAGCAT
GGGGATAGGTGTGGGGAGTCGTGCACATTACGAGAAGGACTCCGTGGCGA
CACGGGCATGGTATCGAACGATTTTGATGAAAGGGCTACACATGTTGGTG
ACTGTGTTAATAAGCGGTCGAATCAAGGACACGCAGTGCGGATTCAAACT
TTTCTCGCGTGCGGCGAATAAAATACTGTTTGGGACGTTGCATCTTGAGA
GATGGGGGTTTGACTTGGAGATCGTCCACGTCTGTGATCGATTGGGATTG
CCCATGGTGGAGGTAGCGGTGAATTGGCAAGAGGTGGAGGGCTCAAAATT
GATAACGAATAAATTGGATGTGGTGCTGGCGTCCGTGGGTATCTTCAGGG
ACATGCTGTGTGTGAGGTTGTGTTACCTTTTGGGGGTGTGGAAGACGACG
CCGTGGACAAAAGAGGGGTTGAAGGTGAGTGGGGGAGGGGGAAGGGAGGG
GGGAACGAGACGGAGGAAGGTGGAGTAG
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protein sequence of NO20G01110.1

>NO20G01110.1-protein ID=NO20G01110.1-protein|Name=NO20G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MVLSVSSPSLSALPDSLGLQHVQAQQHLLAGAVALISAVLTLSFLYVFQP
ALAAWRRPQDHEPHTFVKYAPNSSSSSSSSSSNSDSPARNTRATRRATVA
EEEEEERFPTLADPPTVLLSLVIPAYNEEVRLPVMLDATLAYLEEWKKRS
SKNGSGSCSSSSSLTYELIVVDDGSTDRTVEVASRYSRILGSDVLRVLKL
RTNRGKGGAIKEGMLHSRGEYALMVDADGATDITCLERMLIRTQGVEEGM
EGGSMGIGVGSRAHYEKDSVATRAWYRTILMKGLHMLVTVLISGRIKDTQ
CGFKLFSRAANKILFGTLHLERWGFDLEIVHVCDRLGLPMVEVAVNWQEV
EGSKLITNKLDVVLASVGIFRDMLCVRLCYLLGVWKTTPWTKEGLKVSGG
GGREGGTRRRKVE*
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mRNA from alignment at chr20:350270..351747-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01110.1 ID=NO20G01110.1|Name=NO20G01110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp|location=Sequence derived from alignment at chr20:350270..351747- (Nannochloropsis oceanica)
CAGGCCCACAACAATCAAAGCTTATCATTGTTATCTTGTCCGCCCATCTC
GCCTCCTCGTGAATGCGCACGCCTCCATCCTGCTTCTCCTCCTTGGCAAC
TACACCCTACCAACACTTCTGCCGCAGCAGCACCATCACTCCAATCATCC
AGGCTGCCGTCAGCCCCACCACTAACGCCGCCGCGTGACTAGCATTTGCG
TCCCCTCCCTTTCACTCCATCGCCCCTCGAAGTACCATGGTCCTCTCCGT
CTCTTCCCCCTCCCTCTCCGCCTTGCCTGACAGTCTAGGACTGCAACATG
TCCAAGCACAACAGCACCTCCTCGCAGGTGCTGTAGCATTGATCAGCGCT
GTCTTGACTCTCAGTTTTCTCTACGTCTTTCAACCCGCCCTCGCTGCCTG
GCGCCGGCCACAGGACCACGAGCCCCACACCTTTGTCAAATACGCACCGA
ACAGCAGTAGTAGCAGCAGCAGCAGTAGTAGTAATAGCGATAGTCCAGCG
AGAAACACCCGAGCAACAAGAAGAGCGACCGTAGCGGAGGAGGAGGAGGA
GGAACGCTTCCCTACCCTTGCTGACCCCCCGACGGTGTTGCTCTCTCTAG
TCATTCCCGCCTACAATGAAGAAGTCCGTTTGCCCGTCATGCTGGACGCG
ACTCTTGCTTACCTCGAGGAATGGAAGAAACGCAGCAGCAAGAATGGTAG
TGGTAGTTGCAGCAGCAGCAGCAGCTTGACGTATGAGTTGATTGTCGTCG
ATGACGGGAGTACGGATAGAACAGTCGAGGTCGCGTCAAGGTATTCGCGC
ATACTCGGTTCCGACGTGCTCAGAGTCTTGAAACTCCGCACAAATAGGGG
GAAAGGAGGGGCGATCAAGGAAGGTATGCTTCATAGCAGAGGAGAATATG
CGTTGATGGTCGACGCGGATGGTGCCACTGACATTACGTGTTTAGAACGC
ATGTTGATCCGCACGCAAGGGGTAGAGGAAGGGATGGAGGGAGGGAGCAT
GGGGATAGGTGTGGGGAGTCGTGCACATTACGAGAAGGACTCCGTGGCGA
CACGGGCATGGTATCGAACGATTTTGATGAAAGGGCTACACATGTTGGTG
ACTGTGTTAATAAGCGGTCGAATCAAGGACACGCAGTGCGGATTCAAACT
TTTCTCGCGTGCGGCGAATAAAATACTGTTTGGGACGTTGCATCTTGAGA
GATGGGGGTTTGACTTGGAGATCGTCCACGTCTGTGATCGATTGGGATTG
CCCATGGTGGAGGTAGCGGTGAATTGGCAAGAGGTGGAGGGCTCAAAATT
GATAACGAATAAATTGGATGTGGTGCTGGCGTCCGTGGGTATCTTCAGGG
ACATGCTGTGTGTGAGGTTGTGTTACCTTTTGGGGGTGTGGAAGACGACG
CCGTGGACAAAAGAGGGGTTGAAGGTGAGTGGGGGAGGGGGAAGGGAGGG
GGGAACGAGACGGAGGAAGGTGGAGTAG
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Coding sequence (CDS) from alignment at chr20:350270..351747-

>NO20G01110.1 ID=NO20G01110.1|Name=NO20G01110.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr20:350270..351747- (Nannochloropsis oceanica)
ATGGTCCTCTCCGTCTCTTCCCCCTCCCTCTCCGCCTTGCCTGACAGTCT
AGGACTGCAACATGTCCAAGCACAACAGCACCTCCTCGCAGGTGCTGTAG
CATTGATCAGCGCTGTCTTGACTCTCAGTTTTCTCTACGTCTTTCAACCC
GCCCTCGCTGCCTGGCGCCGGCCACAGGACCACGAGCCCCACACCTTTGT
CAAATACGCACCGAACAGCAGTAGTAGCAGCAGCAGCAGTAGTAGTAATA
GCGATAGTCCAGCGAGAAACACCCGAGCAACAAGAAGAGCGACCGTAGCG
GAGGAGGAGGAGGAGGAACGCTTCCCTACCCTTGCTGACCCCCCGACGGT
GTTGCTCTCTCTAGTCATTCCCGCCTACAATGAAGAAGTCCGTTTGCCCG
TCATGCTGGACGCGACTCTTGCTTACCTCGAGGAATGGAAGAAACGCAGC
AGCAAGAATGGTAGTGGTAGTTGCAGCAGCAGCAGCAGCTTGACGTATGA
GTTGATTGTCGTCGATGACGGGAGTACGGATAGAACAGTCGAGGTCGCGT
CAAGGTATTCGCGCATACTCGGTTCCGACGTGCTCAGAGTCTTGAAACTC
CGCACAAATAGGGGGAAAGGAGGGGCGATCAAGGAAGGTATGCTTCATAG
CAGAGGAGAATATGCGTTGATGGTCGACGCGGATGGTGCCACTGACATTA
CGTGTTTAGAACGCATGTTGATCCGCACGCAAGGGGTAGAGGAAGGGATG
GAGGGAGGGAGCATGGGGATAGGTGTGGGGAGTCGTGCACATTACGAGAA
GGACTCCGTGGCGACACGGGCATGGTATCGAACGATTTTGATGAAAGGGC
TACACATGTTGGTGACTGTGTTAATAAGCGGTCGAATCAAGGACACGCAG
TGCGGATTCAAACTTTTCTCGCGTGCGGCGAATAAAATACTGTTTGGGAC
GTTGCATCTTGAGAGATGGGGGTTTGACTTGGAGATCGTCCACGTCTGTG
ATCGATTGGGATTGCCCATGGTGGAGGTAGCGGTGAATTGGCAAGAGGTG
GAGGGCTCAAAATTGATAACGAATAAATTGGATGTGGTGCTGGCGTCCGT
GGGTATCTTCAGGGACATGCTGTGTGTGAGGTTGTGTTACCTTTTGGGGG
TGTGGAAGACGACGCCGTGGACAAAAGAGGGGTTGAAGGTGAGTGGGGGA
GGGGGAAGGGAGGGGGGAACGAGACGGAGGAAGGTGGAGTAG
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Synonyms
Publications